- Transcript 'Haaura.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S117.g02273.01.t
Possible name(s)
CDH2; CDH4; CDH6
Gene model
Location
S117 [51,076 / 60,090]
Amino acid sequence
Length: 825
>Haaura.CG.MTP2014.S117.g02273.01.p
MRSTTAVVALLFLQLHLCLGAKTIYFKKSSVNGRVKRSWEYPAISILENTVPEYVIVTIK
SNAPELSYYAISSPLLNGEDVFAVDPSTGAISQLQAVDREVQDKFNVTAYAYAADGKKVE
DKVDLIINVFDANDNVPVFDADSLQGNVPENHAISSTTNFFMTVTSTDLDTGENGKVKYW
IVDNSESPPKTPPRFSINDIGQVFVNSTLDYETDNLVTFQVVAKDTPKLPSGNQVTATVT
VHIQDSNDHAPVMDATPPRTLSELSPLNTPLYTVFATDVDEGDNKKVYFYFDDGNIGGKF
QINSFPSDTEKSKGEIILIEPLDFESGIISYDLVIMAYNKDADNANSAAYKSSTTVSIKV
SDANEPPIFTNVPYVATLSEATPATTPLDISIAANDPDFGGNQTITFSIAKDPEYWFTIN
PTTGQLQTNSLLDRESPNVVDSTYTFTIRATDNYPGNKASADYDVAIFITDVNDNAPVVT
IPGLDSDGAVIICEKPPNRTVTIIYGEDPDTTENGPPFSFDFQSEVDSSEWAFEKITAKS
QMVVTFVKDFDLSSRPSTYQLPYTVSDSGSPIQVATATLTVSICQCDDSGNINCSAGIVG
AGGFPLAVVIALVVLFLIVIILILSMIAYRRNRSVDRLKEPILYDEDDVRENIQVYHDEG
GGEEDQEAYDLSTLRRPLMDPNEPIRVDEKPLKAQPQSRMPPGVSDDIGDYIGDAKDQAD
SDPSAPPFDSLLVFDYEGAGSDAGSLSSINTATTDGSVDYDYLNNWGPRFKRLADIQTEV
SKTVLLQLTLSLLRYIYYSHYDLYLYLHLLTNACKILVILNISI*
Nucleotide sequence
Length: 2,525
>Haaura.CG.MTP2014.S117.g02273.01.t
ATGCGGTCAACCACTGCAGTTGTCGCATTGCTGTTTTTGCAGCTCCATCTTTGCCTGGGA
GCAAAAACTATCTATTTCAAAAAGAGCTCAGTTAATGGACGCGTGAAGAGATCATGGGAA
TACCCGGCTATCAGTATCCTGGAGAATACAGTCCCGGAATATGTAATAGTAACTATAAAA
TCGAATGCCCCCGAATTGTCTTATTATGCGATTTCCTCACCACTACTGAACGGAGAAGAC
GTGTTCGCGGTGGATCCGTCAACAGGTGCTATCTCACAGTTGCAGGCTGTTGACAGAGAG
GTGCAAGACAAATTTAATGTGACGGCCTATGCTTATGCAGCTGATGGGAAGAAGGTTGAA
GACAAGGTTGATCTGATAATCAATGTATTTGATGCAAATGACAACGTGCCAGTGTTTGAT
GCCGATTCCCTTCAGGGAAACGTTCCAGAGAACCATGCGATATCTTCGACCACTAACTTC
TTCATGACCGTCACCTCGACGGACCTGGACACGGGAGAAAATGGCAAAGTTAAGTACTGG
ATCGTGGACAACAGTGAAAGTCCCCCAAAGACCCCGCCAAGATTTTCCATAAATGACATA
GGACAGGTTTTCGTCAACAGCACACTAGATTACGAAACCGACAACCTTGTTACTTTTCAA
GTTGTTGCCAAGGATACTCCGAAATTGCCATCTGGGAACCAGGTTACGGCAACTGTGACC
GTTCACATACAAGATTCAAACGATCATGCTCCCGTAATGGATGCCACTCCCCCGCGTACG
CTTTCAGAACTGTCTCCGCTCAATACCCCTCTGTATACTGTGTTTGCTACTGATGTGGAT
GAAGGAGATAATAAGAAGGTTTACTTCTACTTTGATGATGGCAACATCGGAGGAAAGTTT
CAAATCAATTCGTTCCCGTCTGACACCGAAAAGAGCAAGGGAGAGATCATATTGATTGAA
CCCCTGGATTTTGAATCTGGAATAATCTCTTACGATTTAGTAATCATGGCTTACAACAAA
GATGCTGATAATGCTAATTCCGCTGCATATAAGTCATCAACGACCGTAAGCATTAAAGTG
TCGGACGCGAACGAGCCACCCATTTTTACCAATGTGCCCTACGTCGCGACATTGTCCGAG
GCGACCCCGGCCACCACGCCGCTAGATATAAGTATTGCTGCGAATGATCCGGATTTTGGT
GGAAATCAGACCATTACTTTTTCCATCGCAAAAGACCCAGAGTACTGGTTTACCATCAAC
CCGACGACAGGACAGCTTCAAACCAACAGCTTACTCGACAGAGAATCACCAAATGTAGTC
GATAGCACTTACACCTTTACGATTCGCGCAACGGATAACTATCCTGGAAATAAAGCCAGT
GCCGACTACGATGTGGCAATATTCATCACTGATGTTAATGATAATGCGCCGGTCGTTACT
ATCCCCGGTTTAGACAGTGACGGAGCTGTGATAATATGCGAGAAACCGCCCAACCGAACC
GTTACGATTATCTACGGAGAGGACCCAGACACAACTGAGAATGGACCTCCTTTCTCTTTC
GATTTCCAAAGCGAGGTCGACTCAAGTGAATGGGCGTTTGAGAAAATAACTGCAAAGAGT
CAGATGGTCGTAACATTCGTCAAAGATTTTGATCTAAGTTCGCGTCCTTCAACGTATCAG
TTGCCGTACACAGTATCTGACTCGGGATCTCCAATACAAGTCGCAACAGCAACCCTGACA
GTTTCAATATGCCAGTGTGATGATTCTGGTAATATTAACTGCTCTGCTGGTATTGTGGGG
GCCGGTGGTTTTCCTTTGGCAGTCGTCATTGCCCTTGTAGTATTATTCCTGATCGTAATA
ATTCTGATCCTGTCGATGATCGCGTACAGGCGTAATCGAAGTGTGGACAGGTTGAAGGAA
CCGATCTTGTATGATGAGGATGATGTTCGTGAAAACATCCAGGTTTATCATGATGAGGGA
GGCGGAGAAGAAGACCAAGAAGCTTATGACTTGAGCACTCTGCGTCGCCCACTCATGGAT
CCAAACGAACCTATCCGTGTTGACGAAAAACCGCTCAAGGCGCAGCCACAGTCCAGGATG
CCACCAGGAGTCTCTGATGACATTGGCGATTACATTGGAGATGCAAAAGATCAAGCGGAT
AGTGACCCCAGTGCCCCTCCGTTCGACTCGCTCCTTGTCTTCGACTACGAGGGAGCAGGC
TCTGATGCCGGTTCGCTCTCCTCCATCAACACAGCCACGACCGATGGCTCCGTGGATTAC
GACTATCTCAACAACTGGGGGCCTCGGTTCAAGCGCCTGGCAGACATCCAGACTGAAGTT
TCTAAAACAGTACTTCTTCAGCTCACATTATCATTATTACGATACATATATTATTCCCAC
TATGATCTATACTTGTATTTGCACCTTCTCACAAATGCATGTAAAATTTTGGTAATTTTA
AACATTTCGATTTAGCTAGTTTAGGGATGGAGAGGGTACTAGGGTTTTGGAAGAATTCCT
TGAGA
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[44-154] 1.11E-12 - T[127-254] 6.57E-21 - T[247-362] 3.57E-12 - T[358-481] 7.28E-19 - T[472-584] 1.11E-9 |
| SMART |
Cadherin (IPR002126) - T[56-137] 1.4E-4 - T[164-251] 4.6E-19 - T[274-368] 8.9E-9 - T[392-477] 7.6E-21 - T[504-591] 0.041 |
| PRINTS |
Cadherin (IPR002126) - T[80-99] 4.4E-20 - T[118-137] 4.4E-20 - T[137-150] 4.4E-20 - T[199-225] 4.4E-20 - T[461-478] 4.4E-20 |
| Pfam |
Cadherin (IPR002126) - T[147-243] 1.2E-10 - T[260-360] 4.2E-10 - T[374-458] 8.8E-14 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[241-251] . - T[467-477] . |
| Pfam |
Cadherin_cytoplasmic-dom (IPR000233) - T[640-776] 8.8E-45 |
| Gene3D |
Catenin_binding_dom_sf (IPR027397) - T[689-781] 6.4E-31 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CADH4_HUMAN | 33.715 % | 318 | 2.38E-95 |
| CADH6_HUMAN | 32.425 % | 313 | 1.16E-94 |
| CADH2_HUMAN | 34.224 % | 326 | 2.55E-98 |