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  1. Transcript 'KH2012:KH.L147.33.v1...'
  2. Transcript 'Haaura.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S117.g02273.01.t

Possible name(s)

CDH2; CDH4; CDH6

Location

S117 [51,076 / 60,090]

Sequences

Amino acid sequence

Length: 825

>Haaura.CG.MTP2014.S117.g02273.01.p
MRSTTAVVALLFLQLHLCLGAKTIYFKKSSVNGRVKRSWEYPAISILENTVPEYVIVTIK
SNAPELSYYAISSPLLNGEDVFAVDPSTGAISQLQAVDREVQDKFNVTAYAYAADGKKVE
DKVDLIINVFDANDNVPVFDADSLQGNVPENHAISSTTNFFMTVTSTDLDTGENGKVKYW
IVDNSESPPKTPPRFSINDIGQVFVNSTLDYETDNLVTFQVVAKDTPKLPSGNQVTATVT
VHIQDSNDHAPVMDATPPRTLSELSPLNTPLYTVFATDVDEGDNKKVYFYFDDGNIGGKF
QINSFPSDTEKSKGEIILIEPLDFESGIISYDLVIMAYNKDADNANSAAYKSSTTVSIKV
SDANEPPIFTNVPYVATLSEATPATTPLDISIAANDPDFGGNQTITFSIAKDPEYWFTIN
PTTGQLQTNSLLDRESPNVVDSTYTFTIRATDNYPGNKASADYDVAIFITDVNDNAPVVT
IPGLDSDGAVIICEKPPNRTVTIIYGEDPDTTENGPPFSFDFQSEVDSSEWAFEKITAKS
QMVVTFVKDFDLSSRPSTYQLPYTVSDSGSPIQVATATLTVSICQCDDSGNINCSAGIVG
AGGFPLAVVIALVVLFLIVIILILSMIAYRRNRSVDRLKEPILYDEDDVRENIQVYHDEG
GGEEDQEAYDLSTLRRPLMDPNEPIRVDEKPLKAQPQSRMPPGVSDDIGDYIGDAKDQAD
SDPSAPPFDSLLVFDYEGAGSDAGSLSSINTATTDGSVDYDYLNNWGPRFKRLADIQTEV
SKTVLLQLTLSLLRYIYYSHYDLYLYLHLLTNACKILVILNISI*

Nucleotide sequence

Length: 2,525

>Haaura.CG.MTP2014.S117.g02273.01.t
ATGCGGTCAACCACTGCAGTTGTCGCATTGCTGTTTTTGCAGCTCCATCTTTGCCTGGGA
GCAAAAACTATCTATTTCAAAAAGAGCTCAGTTAATGGACGCGTGAAGAGATCATGGGAA
TACCCGGCTATCAGTATCCTGGAGAATACAGTCCCGGAATATGTAATAGTAACTATAAAA
TCGAATGCCCCCGAATTGTCTTATTATGCGATTTCCTCACCACTACTGAACGGAGAAGAC
GTGTTCGCGGTGGATCCGTCAACAGGTGCTATCTCACAGTTGCAGGCTGTTGACAGAGAG
GTGCAAGACAAATTTAATGTGACGGCCTATGCTTATGCAGCTGATGGGAAGAAGGTTGAA
GACAAGGTTGATCTGATAATCAATGTATTTGATGCAAATGACAACGTGCCAGTGTTTGAT
GCCGATTCCCTTCAGGGAAACGTTCCAGAGAACCATGCGATATCTTCGACCACTAACTTC
TTCATGACCGTCACCTCGACGGACCTGGACACGGGAGAAAATGGCAAAGTTAAGTACTGG
ATCGTGGACAACAGTGAAAGTCCCCCAAAGACCCCGCCAAGATTTTCCATAAATGACATA
GGACAGGTTTTCGTCAACAGCACACTAGATTACGAAACCGACAACCTTGTTACTTTTCAA
GTTGTTGCCAAGGATACTCCGAAATTGCCATCTGGGAACCAGGTTACGGCAACTGTGACC
GTTCACATACAAGATTCAAACGATCATGCTCCCGTAATGGATGCCACTCCCCCGCGTACG
CTTTCAGAACTGTCTCCGCTCAATACCCCTCTGTATACTGTGTTTGCTACTGATGTGGAT
GAAGGAGATAATAAGAAGGTTTACTTCTACTTTGATGATGGCAACATCGGAGGAAAGTTT
CAAATCAATTCGTTCCCGTCTGACACCGAAAAGAGCAAGGGAGAGATCATATTGATTGAA
CCCCTGGATTTTGAATCTGGAATAATCTCTTACGATTTAGTAATCATGGCTTACAACAAA
GATGCTGATAATGCTAATTCCGCTGCATATAAGTCATCAACGACCGTAAGCATTAAAGTG
TCGGACGCGAACGAGCCACCCATTTTTACCAATGTGCCCTACGTCGCGACATTGTCCGAG
GCGACCCCGGCCACCACGCCGCTAGATATAAGTATTGCTGCGAATGATCCGGATTTTGGT
GGAAATCAGACCATTACTTTTTCCATCGCAAAAGACCCAGAGTACTGGTTTACCATCAAC
CCGACGACAGGACAGCTTCAAACCAACAGCTTACTCGACAGAGAATCACCAAATGTAGTC
GATAGCACTTACACCTTTACGATTCGCGCAACGGATAACTATCCTGGAAATAAAGCCAGT
GCCGACTACGATGTGGCAATATTCATCACTGATGTTAATGATAATGCGCCGGTCGTTACT
ATCCCCGGTTTAGACAGTGACGGAGCTGTGATAATATGCGAGAAACCGCCCAACCGAACC
GTTACGATTATCTACGGAGAGGACCCAGACACAACTGAGAATGGACCTCCTTTCTCTTTC
GATTTCCAAAGCGAGGTCGACTCAAGTGAATGGGCGTTTGAGAAAATAACTGCAAAGAGT
CAGATGGTCGTAACATTCGTCAAAGATTTTGATCTAAGTTCGCGTCCTTCAACGTATCAG
TTGCCGTACACAGTATCTGACTCGGGATCTCCAATACAAGTCGCAACAGCAACCCTGACA
GTTTCAATATGCCAGTGTGATGATTCTGGTAATATTAACTGCTCTGCTGGTATTGTGGGG
GCCGGTGGTTTTCCTTTGGCAGTCGTCATTGCCCTTGTAGTATTATTCCTGATCGTAATA
ATTCTGATCCTGTCGATGATCGCGTACAGGCGTAATCGAAGTGTGGACAGGTTGAAGGAA
CCGATCTTGTATGATGAGGATGATGTTCGTGAAAACATCCAGGTTTATCATGATGAGGGA
GGCGGAGAAGAAGACCAAGAAGCTTATGACTTGAGCACTCTGCGTCGCCCACTCATGGAT
CCAAACGAACCTATCCGTGTTGACGAAAAACCGCTCAAGGCGCAGCCACAGTCCAGGATG
CCACCAGGAGTCTCTGATGACATTGGCGATTACATTGGAGATGCAAAAGATCAAGCGGAT
AGTGACCCCAGTGCCCCTCCGTTCGACTCGCTCCTTGTCTTCGACTACGAGGGAGCAGGC
TCTGATGCCGGTTCGCTCTCCTCCATCAACACAGCCACGACCGATGGCTCCGTGGATTAC
GACTATCTCAACAACTGGGGGCCTCGGTTCAAGCGCCTGGCAGACATCCAGACTGAAGTT
TCTAAAACAGTACTTCTTCAGCTCACATTATCATTATTACGATACATATATTATTCCCAC
TATGATCTATACTTGTATTTGCACCTTCTCACAAATGCATGTAAAATTTTGGTAATTTTA
AACATTTCGATTTAGCTAGTTTAGGGATGGAGAGGGTACTAGGGTTTTGGAAGAATTCCT
TGAGA

InterProScan

SUPERFAMILY
Cadherin-like (IPR015919) - T[44-154] 1.11E-12 - T[127-254] 6.57E-21 - T[247-362] 3.57E-12 - T[358-481] 7.28E-19 - T[472-584] 1.11E-9
SMART
Cadherin (IPR002126) - T[56-137] 1.4E-4 - T[164-251] 4.6E-19 - T[274-368] 8.9E-9 - T[392-477] 7.6E-21 - T[504-591] 0.041
PRINTS
Cadherin (IPR002126) - T[80-99] 4.4E-20 - T[118-137] 4.4E-20 - T[137-150] 4.4E-20 - T[199-225] 4.4E-20 - T[461-478] 4.4E-20
Pfam
Cadherin (IPR002126) - T[147-243] 1.2E-10 - T[260-360] 4.2E-10 - T[374-458] 8.8E-14
ProSitePatterns
Cadherin_CS (IPR020894) - T[241-251] . - T[467-477] .
Pfam
Cadherin_cytoplasmic-dom (IPR000233) - T[640-776] 8.8E-45
Gene3D
Catenin_binding_dom_sf (IPR027397) - T[689-781] 6.4E-31

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CADH4_HUMAN 33.715 % 318 2.38E-95
CADH6_HUMAN 32.425 % 313 1.16E-94
CADH2_HUMAN 34.224 % 326 2.55E-98





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