- Transcript 'Haaura.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S117.g02273.02.t
Possible name(s)
CDH2; CDH4; CDH6
Gene model
Location
S117 [53,752 / 60,090]
Amino acid sequence
Length: 596
>Haaura.CG.MTP2014.S117.g02273.02.p
MRSTTAVVALLFLQLHLCLGAKTIYFKKSSVNGRVKRSWEYPAISILENTVPEYVIVTIK
SNAPELSYYAISSPLLNGEDVFAVDPSTGAISQLQAVDREVQDKFNVTAYAYAADGKKVE
DKVDLIINVFDANDNVPVFDADSLQGNVPENHAISSTTNFFMTVTSTDLDTGENGKVKYW
IVDNSESPPKTPPRFSINDIGQVFVNSTLDYETDNLVTFQVVAKDTPKLPSGNQVTATVT
VHIQDSNDHAPVMDATPPRTLSELSPLNTPLYTVFATDVDEGDNKKVYFYFDDGNIGGKF
QINSFPSDTEKSKGEIILIEPLDFESGIISYDLVIMAYNKDADNANSAAYKSSTTVSIKV
SDANEPPIFTNVPYVATLSEATPATTPLDISIAANDPDFGGNQTITFSIAKDPEYWFTIN
PTTGQLQTNSLLDRESPNVVDSTYTFTIRATDNYPGNKASADYDVAIFITDVNDNAPVVT
IPGLDSDGAVIICEKPPNRTVTIIYGEDPDTTENGPPFSFDFQSEVDSSEWAFEKITAKS
QMVVTFVKDFDLSSRPSTYQLPYTVSDSGSPIQVATATLTVSICHSRFFRIFSMEA
Nucleotide sequence
Length: 1,788
>Haaura.CG.MTP2014.S117.g02273.02.t
ATGCGGTCAACCACTGCAGTTGTCGCATTGCTGTTTTTGCAGCTCCATCTTTGCCTGGGA
GCAAAAACTATCTATTTCAAAAAGAGCTCAGTTAATGGACGCGTGAAGAGATCATGGGAA
TACCCGGCTATCAGTATCCTGGAGAATACAGTCCCGGAATATGTAATAGTAACTATAAAA
TCGAATGCCCCCGAATTGTCTTATTATGCGATTTCCTCACCACTACTGAACGGAGAAGAC
GTGTTCGCGGTGGATCCGTCAACAGGTGCTATCTCACAGTTGCAGGCTGTTGACAGAGAG
GTGCAAGACAAATTTAATGTGACGGCCTATGCTTATGCAGCTGATGGGAAGAAGGTTGAA
GACAAGGTTGATCTGATAATCAATGTATTTGATGCAAATGACAACGTGCCAGTGTTTGAT
GCCGATTCCCTTCAGGGAAACGTTCCAGAGAACCATGCGATATCTTCGACCACTAACTTC
TTCATGACCGTCACCTCGACGGACCTGGACACGGGAGAAAATGGCAAAGTTAAGTACTGG
ATCGTGGACAACAGTGAAAGTCCCCCAAAGACCCCGCCAAGATTTTCCATAAATGACATA
GGACAGGTTTTCGTCAACAGCACACTAGATTACGAAACCGACAACCTTGTTACTTTTCAA
GTTGTTGCCAAGGATACTCCGAAATTGCCATCTGGGAACCAGGTTACGGCAACTGTGACC
GTTCACATACAAGATTCAAACGATCATGCTCCCGTAATGGATGCCACTCCCCCGCGTACG
CTTTCAGAACTGTCTCCGCTCAATACCCCTCTGTATACTGTGTTTGCTACTGATGTGGAT
GAAGGAGATAATAAGAAGGTTTACTTCTACTTTGATGATGGCAACATCGGAGGAAAGTTT
CAAATCAATTCGTTCCCGTCTGACACCGAAAAGAGCAAGGGAGAGATCATATTGATTGAA
CCCCTGGATTTTGAATCTGGAATAATCTCTTACGATTTAGTAATCATGGCTTACAACAAA
GATGCTGATAATGCTAATTCCGCTGCATATAAGTCATCAACGACCGTAAGCATTAAAGTG
TCGGACGCGAACGAGCCACCCATTTTTACCAATGTGCCCTACGTCGCGACATTGTCCGAG
GCGACCCCGGCCACCACGCCGCTAGATATAAGTATTGCTGCGAATGATCCGGATTTTGGT
GGAAATCAGACCATTACTTTTTCCATCGCAAAAGACCCAGAGTACTGGTTTACCATCAAC
CCGACGACAGGACAGCTTCAAACCAACAGCTTACTCGACAGAGAATCACCAAATGTAGTC
GATAGCACTTACACCTTTACGATTCGCGCAACGGATAACTATCCTGGAAATAAAGCCAGT
GCCGACTACGATGTGGCAATATTCATCACTGATGTTAATGATAATGCGCCGGTCGTTACT
ATCCCCGGTTTAGACAGTGACGGAGCTGTGATAATATGCGAGAAACCGCCCAACCGAACC
GTTACGATTATCTACGGAGAGGACCCAGACACAACTGAGAATGGACCTCCTTTCTCTTTC
GATTTCCAAAGCGAGGTCGACTCAAGTGAATGGGCGTTTGAGAAAATAACTGCAAAGAGT
CAGATGGTCGTAACATTCGTCAAAGATTTTGATCTAAGTTCGCGTCCTTCAACGTATCAG
TTGCCGTACACAGTATCTGACTCGGGATCTCCAATACAAGTCGCAACAGCAACCCTGACA
GTTTCAATATGCCATTCTAGATTCTTCAGAATTTTTAGTATGGAGGCC
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[44-154] 6.85E-13 - T[127-255] 3.71E-21 - T[247-362] 2.14E-12 - T[358-481] 4.28E-19 - T[472-584] 1.04E-9 |
| SMART |
Cadherin (IPR002126) - T[56-137] 1.4E-4 - T[164-251] 4.6E-19 - T[274-368] 8.9E-9 - T[392-477] 7.6E-21 - T[504-587] 1.6 |
| PRINTS |
Cadherin (IPR002126) - T[80-99] 1.0E-20 - T[118-137] 1.0E-20 - T[137-150] 1.0E-20 - T[199-225] 1.0E-20 - T[461-478] 1.0E-20 |
| Pfam |
Cadherin (IPR002126) - T[147-243] 7.8E-11 - T[260-360] 2.6E-10 - T[374-458] 5.5E-14 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[241-251] . - T[467-477] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CADH2_HUMAN | 30.051 % | 187 | 1.5E-50 |
| CAD15_HUMAN | 28.76 % | 186 | 1.99E-50 |
| CAD13_HUMAN | 30.064 % | 190 | 2.38E-52 |