- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'Haaura.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S1229.g07912.01.t
Possible name(s)
PABPC1; PABPC3; PABPC4
Gene model
Location
S1229 [5,299 / 5,692]
Amino acid sequence
Length: 131
>Haaura.CG.MTP2014.S1229.g07912.01.p
MVSTGPSYPMASLYVGDLHPDATEAMLYEKFSQAGPVLSIRVCRDMVTRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGHPIRIMWSQRDPGLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVS
Nucleotide sequence
Length: 393
>Haaura.CG.MTP2014.S1229.g07912.01.t
ATGGTTTCTACTGGTCCTTCCTATCCAATGGCTTCTCTGTACGTGGGCGACCTTCACCCT
GATGCGACTGAGGCAATGCTTTACGAAAAGTTCTCTCAAGCTGGTCCCGTGCTGTCAATC
CGCGTGTGTCGTGACATGGTCACGAGACGTTCTCTCGGATATGCCTACGTCAACTTTCAG
CAACCCGCTGACGCCGAACGTGCTCTTGACACTATGAATTTCGACGTTATCAAAGGCCAC
CCAATTCGTATTATGTGGAGTCAACGTGACCCTGGTCTGAGGAAATCTGGTGTCGGTAAC
ATCTTCATCAAGAATCTTGACAAATCCATTGACAACAAGGCTCTGTATGATACTTTTTCG
GCTTTCGGAAACATCCTGTCCTGTAAGGTTTCG
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[3-92] 1.3E-26 - T[93-131] 3.4E-10 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[9-130] 5.37E-36 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[11-89] 17.08 |
| SMART |
RRM_dom (IPR000504) - T[12-85] 3.3E-22 |
| Pfam |
RRM_dom (IPR000504) - T[13-83] 1.4E-21 - T[101-130] 8.2E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PABP1_HUMAN | 91.538 % | 259 | 1.25E-84 |
| PABP4_HUMAN | 90.769 % | 252 | 4.36E-82 |
| PAP1L_HUMAN | 84.733 % | 245 | 1.65E-79 |