- Transcript 'Haaura.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S1229.g07912.02.t
Possible name(s)
PABPC1; PABPC3; PABPC4
Gene model
Location
S1229 [5,299 / 6,359]
Amino acid sequence
Length: 334
>Haaura.CG.MTP2014.S1229.g07912.02.p
MVSTGPSYPMASLYVGDLHPDATEAMLYEKFSQAGPVLSIRVCRDMVTRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGHPIRIMWSQRDPGLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVSCDENGSKGYGFVHFETEEAAQSAIQKVDGMLLNDKKVFVGKFIARAERH
KQIGEKLKNFTNIYIKNFGENLDDGKLQDMFEQYGSVKSVAVMKDHEGKSKGFGFVAFEN
HEEAAKAVTELNNKDIGGQEIYVGRAQKKSERLAEIRHRYERQKQEQIQRYQGVNLYVKN
LDDTITDDMLREAFAQFGTITSAKKKQPRPLLK*
Nucleotide sequence
Length: 1,002
>Haaura.CG.MTP2014.S1229.g07912.02.t
ATGGTTTCTACTGGTCCTTCCTATCCAATGGCTTCTCTGTACGTGGGCGACCTTCACCCT
GATGCGACTGAGGCAATGCTTTACGAAAAGTTCTCTCAAGCTGGTCCCGTGCTGTCAATC
CGCGTGTGTCGTGACATGGTCACGAGACGTTCTCTCGGATATGCCTACGTCAACTTTCAG
CAACCCGCTGACGCCGAACGTGCTCTTGACACTATGAATTTCGACGTTATCAAAGGCCAC
CCAATTCGTATTATGTGGAGTCAACGTGACCCTGGTCTGAGGAAATCTGGTGTCGGTAAC
ATCTTCATCAAGAATCTTGACAAATCCATTGACAACAAGGCTCTGTATGATACTTTTTCG
GCTTTCGGAAACATCCTGTCCTGTAAGGTTTCGTGTGACGAGAACGGATCGAAAGGTTAC
GGGTTTGTGCATTTTGAGACCGAAGAGGCTGCACAGAGTGCCATTCAAAAAGTCGATGGC
ATGTTGTTGAACGACAAGAAAGTTTTTGTAGGAAAATTCATCGCTCGTGCTGAACGTCAC
AAGCAGATTGGAGAGAAGCTCAAGAATTTCACTAACATTTATATCAAGAATTTTGGTGAG
AACTTGGACGATGGCAAGTTGCAGGACATGTTCGAGCAGTATGGAAGCGTGAAAAGCGTA
GCTGTCATGAAAGATCATGAGGGTAAATCAAAGGGCTTTGGATTTGTTGCGTTCGAAAAT
CATGAGGAAGCTGCCAAAGCTGTGACCGAATTGAACAACAAGGATATAGGAGGCCAAGAA
ATATACGTTGGCCGAGCACAGAAGAAATCTGAACGTCTGGCGGAAATCCGACACCGTTAT
GAAAGGCAGAAACAAGAACAAATTCAGCGATACCAGGGAGTTAATCTGTATGTGAAAAAC
CTTGACGATACGATCACCGATGATATGCTTCGCGAAGCCTTTGCTCAGTTCGGCACGATC
ACCAGTGCCAAAAAGAAGCAACCAAGGCCGTTACTGAAATGA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[3-92] 1.2E-25 - T[93-178] 6.9E-24 - T[179-278] 1.3E-26 - T[283-329] 6.1E-9 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[10-176] 9.51E-49 - T[191-326] 4.58E-34 |
| TIGRFAM |
PABP_1234 (IPR006515) - T[11-324] 8.5E-157 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[11-89] 17.08 - T[99-170] 16.449 - T[191-268] 19.945 |
| SMART |
RRM_dom (IPR000504) - T[12-85] 3.3E-22 - T[100-171] 5.6E-22 - T[192-264] 3.0E-25 |
| Pfam |
RRM_dom (IPR000504) - T[13-83] 9.7E-21 - T[101-167] 8.4E-20 - T[193-261] 1.4E-21 - T[296-324] 3.4E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PABP1_HUMAN | 75 % | 532 | 0 |
| PABP4_HUMAN | 74.691 % | 519 | 0 |
| PABP3_HUMAN | 69.753 % | 489 | 4.38E-171 |