- Transcript 'KH2012:KH.L154.4.v1....' >
- Transcript 'Mooccu.CG.ELv1_2.S71...' >
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- Transcript 'Haaura.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S1296.g08057.01.t
Possible name(s)
PCDH17; PCDH18; PCDHAC2
Gene model
Location
S1296 [11,786 / 23,189]
Amino acid sequence
Length: 1,359
>Haaura.CG.MTP2014.S1296.g08057.01.p
QTKQFKIHIWAASNALVPAASSYRHLFCRRLINSTNDHREQDACTASFLYQINHSLCAAA
YAKSNPVVGYPQNMPANSLFAKHLAKNNCTVNTNHKILNRVMASSYVITRLAYIFMMLTA
SVNTLNTAIRLDFPEEQERGTIVADLAKSFNVRSSDIGGRSFDILSQIMMSGHKVIANNG
KWVEINKENGVITVKEPVDRETECGEDSEFECVIVLKTAMMPQAHFRLQNVELMVTDIND
HNPKFPAADSEHPFSVDIKEDAPLSVINLDRYLATDEDTGDNAKITYLMPKNEYFQLQQQ
TDSTGAPHLGLEVKSALDYESMDIINFTITAEDAGSPIHRSSSVKFSVRVLDANDNHPIF
EEEEYNLNLRENLPAGKVITSVVAHDADRGMNGQVRYFIPNAGNSVTARKLVEIDANTGV
VRLRQPLDRETHDNLRVVIGARDRTAEEEGERKAGKTYLIIHVDDMNDNEPRIQIDIILN
GESREAVYIPENADRGTYVAFVGASDADTGMNGIVSLKMDTKLMTATDGISGGRQVADVS
NYFILTSENLIKTNVIFDREKYNKYSITITACDNGNPPRCSIESVPVILLDVNDNAPIFT
PAQENSIVIPEDRQVGTYIAEITANDADHLNAPALIKKKDGTFEHSENGEVRYSLSYGEA
VFAIESKTGKLTLVGKLDYEVKKDWKLIVTAQDMGVPPKKTNFTYSVHVTDVNDHNPEFL
LPLVNNSTIYATILNTRPFYTIKSLDRDQGENSRIWYSISSEDGEKEPHRFNLDPVTGSL
RLNSSNNLKELIGKHFLTIKASDSGNPPLATDTTIYIEVTDLPLSTLIPTDDSDLSTGSA
GMTVIVLASLASATIILLLILACIVVKCKRENKEIRTYNCRAAEGRPALTDRSKSSMSQV
GSIDEVCVVSTPGQVTSTRDVYFSKAMNEMNRTRSMTLGNNRPLLDPNTAKYSSLDRGNK
FSTFSIANKGNTNGATNIISSTHNDGDSGKGESDKDCDSCNGDRENQGNSEKLYSMNINS
TQTCKGYLNELGPRCTINCRDIGHSDTCWMPVVAHCDIHGDHDSFVYSDCGSENGSETAY
TNRNYSHHFIPSLNPQPARFFDSCSLETISETQPLRLILENGGNSTKPAVYSSESFNVNE
YPSYPGSNSFLDYQHDIDEAYQHTYATLGHYPEQSQWQEMPRSPEYETSSSKLINPPPRP
SSVHSYHRDDSFDQTPRPPSQRSSRSDVVSPHLFSHSNPYLPTVSTSELFHPRPLSGDFS
NDERKLQNSGSNVMEKVKRFSQAAQRRPSLRDQVLQRRFITQNVTDPTNENEAHVEESLM
RDVRNDWYRIDNSPTANSSVSLEETQRIISDIDKLITS*
Nucleotide sequence
Length: 4,077
>Haaura.CG.MTP2014.S1296.g08057.01.t
CAGACTAAACAGTTCAAAATTCATATTTGGGCAGCTTCGAATGCACTAGTACCCGCAGCA
TCTTCGTATCGACATCTTTTCTGCAGAAGATTGATCAATTCCACGAATGATCACAGAGAA
CAAGATGCTTGTACCGCGAGCTTTTTGTATCAAATCAATCATAGCCTTTGTGCCGCCGCT
TATGCCAAATCTAACCCTGTTGTGGGATATCCACAAAACATGCCGGCAAACTCTTTATTC
GCAAAGCATTTAGCAAAAAATAATTGCACTGTTAATACAAATCATAAAATACTGAATAGA
GTCATGGCGTCTTCCTACGTCATCACTCGACTGGCGTACATCTTCATGATGCTGACAGCA
TCCGTTAACACGTTGAATACTGCAATAAGATTGGACTTTCCAGAAGAACAAGAAAGAGGG
ACGATCGTTGCTGATCTTGCGAAATCTTTCAACGTTCGATCATCGGATATTGGAGGAAGG
TCATTTGATATTCTAAGTCAAATAATGATGTCCGGTCACAAAGTCATCGCCAACAATGGG
AAGTGGGTTGAGATCAATAAGGAAAATGGTGTGATCACAGTAAAAGAACCCGTTGATCGT
GAGACAGAATGTGGAGAAGATTCGGAATTCGAATGCGTTATTGTTCTGAAGACGGCTATG
ATGCCACAAGCTCATTTTCGATTGCAAAATGTTGAGTTAATGGTCACTGATATCAACGAC
CACAACCCAAAGTTTCCTGCTGCTGACAGCGAGCACCCATTTTCAGTCGACATCAAGGAA
GACGCTCCTCTCAGCGTCATTAATCTCGATAGATACTTGGCAACAGATGAAGATACAGGC
GACAATGCAAAAATTACATATTTGATGCCAAAAAATGAATACTTTCAACTGCAACAACAA
ACAGACTCCACTGGAGCTCCACATTTAGGACTGGAAGTGAAGTCAGCTCTAGATTACGAA
AGCATGGATATAATTAATTTTACAATAACCGCTGAGGATGCAGGGAGCCCGATACATCGC
TCCAGTTCTGTTAAATTCAGCGTTCGCGTGCTGGATGCTAACGATAATCATCCCATATTC
GAAGAGGAGGAATACAACTTGAACCTTCGTGAAAATCTCCCAGCTGGAAAGGTTATCACT
TCGGTCGTTGCCCACGATGCTGACAGAGGAATGAACGGACAGGTTCGCTACTTCATACCA
AACGCAGGGAACTCTGTGACGGCAAGAAAATTAGTCGAAATCGACGCTAACACGGGTGTT
GTTAGATTGCGCCAACCGCTTGATCGCGAAACCCATGATAACCTTCGAGTTGTCATTGGT
GCTAGAGACAGGACAGCTGAAGAGGAGGGTGAGAGAAAAGCGGGTAAAACCTATTTGATC
ATACACGTCGATGATATGAATGACAACGAGCCCCGGATACAGATTGATATCATTCTAAAC
GGCGAAAGCAGAGAAGCAGTATACATACCAGAAAACGCAGATAGAGGAACGTACGTGGCG
TTTGTAGGCGCATCTGATGCCGACACTGGAATGAATGGCATAGTCTCTCTGAAAATGGAT
ACAAAACTAATGACAGCTACTGACGGTATCTCGGGTGGTAGGCAAGTCGCCGACGTCAGC
AATTACTTTATCCTGACTTCCGAAAATCTCATCAAAACCAACGTAATTTTCGATAGAGAA
AAATATAACAAGTACAGCATAACAATAACAGCATGTGACAACGGAAACCCTCCAAGATGC
TCGATCGAATCAGTACCTGTTATTTTACTGGATGTGAACGACAACGCTCCCATTTTTACA
CCAGCTCAAGAGAACTCGATAGTCATCCCTGAAGATCGCCAAGTCGGTACTTATATTGCA
GAGATCACGGCAAATGATGCTGATCACTTGAATGCTCCTGCTCTAATCAAGAAAAAGGAT
GGTACATTTGAGCACTCGGAAAACGGGGAAGTTCGGTATTCTCTGAGCTATGGCGAAGCA
GTGTTTGCTATTGAGTCAAAAACTGGAAAACTTACCTTGGTGGGGAAGTTGGATTACGAA
GTTAAGAAGGACTGGAAGCTAATCGTAACTGCACAAGATATGGGAGTACCGCCGAAGAAG
ACAAATTTCACCTACAGTGTTCACGTTACTGATGTCAACGACCACAACCCTGAATTTTTG
CTACCACTGGTTAACAATTCCACCATATATGCAACAATTTTGAATACTCGTCCTTTCTAT
ACGATTAAGTCTCTTGACAGAGATCAAGGGGAAAATTCTAGAATTTGGTATTCTATCTCT
AGTGAGGACGGTGAAAAGGAACCTCATAGGTTTAATCTTGACCCCGTCACTGGAAGCCTT
CGACTCAACTCTAGCAACAATCTGAAAGAATTAATAGGGAAGCATTTCCTCACGATCAAA
GCCAGCGATAGCGGGAATCCTCCTCTTGCAACCGACACAACTATATACATTGAAGTAACA
GATCTTCCCTTATCTACTTTAATTCCAACAGACGACAGTGACCTTTCTACAGGCTCTGCA
GGAATGACAGTGATTGTTCTTGCCTCGTTGGCATCAGCTACCATAATATTACTCCTTATA
TTGGCCTGCATTGTTGTGAAATGCAAGAGAGAAAATAAGGAAATTCGTACCTATAATTGC
CGAGCTGCAGAAGGCAGACCAGCACTGACTGACCGAAGCAAAAGTAGTATGTCACAAGTG
GGCAGTATTGACGAGGTTTGCGTCGTCTCTACTCCAGGCCAAGTGACTTCGACTCGTGAC
GTGTATTTCAGCAAAGCCATGAATGAAATGAACCGAACGAGATCGATGACACTGGGTAAT
AACAGACCACTGTTGGATCCAAACACAGCGAAATACTCTTCTCTCGACCGTGGAAACAAA
TTCAGTACATTTTCAATCGCTAATAAGGGCAACACAAACGGAGCTACAAATATCATTTCA
TCAACTCACAACGATGGTGATAGTGGAAAGGGAGAAAGCGATAAAGACTGTGACAGCTGC
AATGGTGACAGAGAAAACCAAGGAAACAGCGAAAAACTATACTCCATGAATATCAATTCA
ACACAAACATGCAAAGGCTATCTGAATGAGCTTGGACCAAGGTGTACCATAAATTGCAGA
GACATTGGTCACAGCGACACTTGTTGGATGCCAGTCGTAGCGCATTGTGATATTCACGGG
GACCACGACAGTTTTGTCTACAGCGACTGTGGCAGTGAAAACGGGAGCGAAACGGCCTAT
ACCAACAGAAATTATTCTCATCATTTCATTCCATCGTTAAATCCCCAACCCGCGCGATTT
TTCGATAGCTGTAGTCTTGAAACCATCAGTGAAACACAACCCTTACGACTAATTCTTGAA
AACGGTGGAAACTCCACAAAGCCAGCTGTGTATTCTTCCGAATCTTTCAATGTGAATGAA
TATCCATCTTATCCCGGATCAAATTCTTTCTTAGACTATCAGCATGATATCGACGAAGCA
TATCAACACACGTACGCAACTTTGGGCCATTATCCTGAACAGTCTCAATGGCAGGAAATG
CCCAGATCTCCCGAATACGAAACCTCTTCGTCGAAGCTAATAAATCCACCGCCTCGTCCA
AGCTCCGTGCACAGCTACCACAGAGATGACTCCTTCGATCAAACACCTAGGCCACCGAGT
CAAAGGTCGAGTCGATCCGATGTGGTATCACCCCATTTATTCTCCCACAGTAATCCATAT
TTACCCACGGTATCGACTTCGGAATTGTTTCACCCTCGTCCACTGTCAGGTGATTTTTCG
AATGACGAGCGGAAGCTGCAAAATAGCGGTAGCAACGTTATGGAAAAAGTCAAACGGTTT
TCTCAAGCTGCACAGCGCCGACCTTCTTTGCGTGACCAAGTTTTGCAAAGACGTTTCATT
ACACAGAATGTTACCGACCCCACAAACGAAAACGAAGCACATGTGGAAGAATCATTAATG
CGCGACGTTAGGAACGATTGGTACAGAATAGATAATTCTCCAACCGCAAATAGTTCAGTT
TCCTTGGAGGAGACTCAGAGAATTATATCTGATATTGATAAACTGATTACGTCATAA
| Pfam |
Cadherin_N (IPR013164) - T[129-217] 3.6E-8 |
| SMART |
Cadherin (IPR002126) - T[150-243] 6.0E-4 - T[272-358] 1.5E-17 - T[382-471] 1.6E-19 - T[502-597] 5.0E-15 - T[636-717] 4.4E-19 - T[742-823] 4.9E-11 |
| PRINTS |
Cadherin (IPR002126) - T[181-200] 5.8E-28 - T[360-389] 5.8E-28 - T[564-576] 5.8E-28 - T[578-597] 5.8E-28 - T[667-693] 5.8E-28 - T[701-718] 5.8E-28 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[252-360] 2.09E-12 - T[348-477] 9.71E-25 - T[461-619] 6.64E-21 - T[587-723] 1.08E-20 - T[707-822] 1.14E-16 |
| Pfam |
Cadherin (IPR002126) - T[255-350] 1.8E-8 - T[365-463] 6.0E-14 - T[487-587] 8.9E-8 - T[606-710] 2.9E-12 - T[738-820] 3.0E-9 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[348-358] . - T[461-471] . - T[587-597] . - T[707-717] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCD18_HUMAN | 26.759 % | 281 | 4.43E-78 |
| PCD17_HUMAN | 27.264 % | 273 | 3.38E-75 |
| PCDC2_HUMAN | 29.091 % | 268 | 3.61E-74 |