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TRANSCRIPT CARD

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  1. Clone 'cilv041p17' > 
  2. Transcript 'KH2012:KH.C11.112.v3...' > 
  3. Transcript 'Harore.CG.MTP2014.S7...' > 
  4. Transcript 'Haaura.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S135.g02514.01.t

Possible name(s)

LNX2; MPDZ; PATJ

Gene model

Haaura.CG.MTP2014.S135.g02514

Location

S135 [31,880 / 36,755]

Sequences

Amino acid sequence

Length: 1,625

>Haaura.CG.MTP2014.S135.g02514.01.p
MGSEQAAAVLRQCGTVVRLVVARGALDNDDMAEENLVHDQNGDASSETSSVTSEEGGSDN
AVPSTMEYFEVELIKDAKGLGITIAGFVQDEESDRDDEESTGIYVKSVSPGSAADIDGRI
LPGDQIVAVDGRRLDGPNMSSDEAVQILKSTGTVVNLTIGRLQQEDGRESITSESSSSSL
PDIAAPSINDWDEIEKDFAATLTPSDEERIRRRWQAVMGSQYEIVVVQIKKFSKTSGLGI
SLEGTIDDSDQPHHYIRSLLPEGPVGRSGQLNPGDELLEVNGSRILGLHHVEVVTVIKEL
PLDVCIVCARQSNSFLMPAMRNSIILEEFEGRLVERPPSSVSSSESEISFHEERKSSLLE
SEIQDHDASAVEDDQNVSLPYSQYEEHRTESISSSSTESESEESVQSDHEIKSPTIYVKD
DAPQKLDEEDVKSAWEDEVTYIDLLKGNESLGFSILDFQDPIHPDRTAILVRTLVEGGTA
DRDGRLEPGDKLMYVNNISLKNESLENVVVVLKSVRPGIVRIGVLKPKPVFRVLAEDNSM
TIKDEPIPPQRKISSSSSESSVREEISHSSYKAAKEQAEHNIAYASSSSSSLSEPSVASR
QHQEFTGFHRNIETAQVPVSSYHQREAVNIQKPAEFIPVPQSSAYFRYEPVRQPGIASSS
QSDISSAGLRSPSLVTQSSSGNTSAEERKMEVRQVQVSGMTAIAITSSLTSHNPYKPREP
TVSVQQSYERSSSTEHSGSEYSQPPRTSPVPLVPPKPVGYSAPSWQKGGDTFSPVPISTE
MYEKTVEISKGREGLGITVSPDRDGDGLIIGSIVAGGSVFKAGNPKLGDIIRRINNDSAV
GLGAMQARALIKNHSSFSDDVKIIYIPKEYITSFKKGIPPPKIIERVPSDNATNTQTASR
SVSSIKSKFEIPNPERPSSPPVNVSERLQKYKQTKGDLHYIELEKGANGLGLSLAGNKEK
AQQSIYVVGINPEGAAGKDGRIKVGDELLDINGVALSGQNTHQIAMNVIRSNSHLGIILC
RNNTSVTPLESVQKEKAAPQHFQYPSKPVNPKTVHSSSSSATSSSSNLDNARVIKLVKDF
QGLGFAIAETVNGIVVQSIANGGTSDRDGRLKTGDYIVAVDSTSLEGMSYESAVRILKES
RGTVKLTVSSEPQLSGNAPNQSPSLNLLTCPIISGKEMTIEIMKGKSGLGVSIVGGSDSL
LGSILVHTVYDEGAAARDGRLWPGDLILNVNEHDLRTATHDQAIEVLRNTPSRVKLVILR
EENKDPPKVDHDIQTLDVQLEKRADRGLGLSILGRSKEGGGVYVSNIVPHGAADMEGSIR
PGDQILAFNGINMQHATQDDVAQALKHAKGLIHFKIGRCHVGGVSKSTAPFIPMALSSKE
QKSDLGASRSSSSSKEECKENERFVEIKKGPSQPLGISISGGVGSPLGNVPVFVAMVQQN
GAAEGKLDIGDNILSINGQSTENKTHDDIVRMLKGSDDSIVLLKVRKGEQDIRSLSEYLA
ETANTMSNMLASSMPDITAESNFYQPQDSDLSLQSQRLILITLDRGTDGLGFSVVGGMGS
MYGDLPIFVKSVFNVGAAARDGRLKKGDRIVAVNGESLDGSTHPEAVTILKNAKGKVVLE
VVAS*

Nucleotide sequence

Length: 4,875

>Haaura.CG.MTP2014.S135.g02514.01.t
ATGGGTTCGGAGCAAGCTGCTGCGGTTCTTCGACAGTGCGGAACTGTTGTTCGGCTCGTT
GTTGCGAGAGGGGCGTTGGACAACGATGATATGGCTGAAGAAAACCTGGTTCATGATCAA
AACGGGGATGCATCCTCGGAAACTTCATCCGTAACTTCTGAAGAAGGTGGCTCGGATAAC
GCTGTCCCTTCAACCATGGAATATTTTGAGGTTGAACTGATTAAAGATGCAAAAGGTCTA
GGAATTACAATAGCAGGTTTTGTACAAGATGAAGAAAGTGACAGAGACGATGAAGAGTCT
ACCGGAATTTACGTGAAGAGTGTTTCCCCAGGATCGGCGGCAGATATTGACGGCCGAATT
CTTCCAGGAGATCAAATAGTTGCTGTAGACGGAAGACGTCTTGACGGTCCCAACATGTCA
AGCGATGAGGCAGTACAAATTTTAAAATCAACAGGCACTGTTGTTAACCTCACCATTGGT
AGATTGCAACAAGAAGATGGAAGAGAGTCTATAACCTCCGAGTCAAGCTCCTCAAGTTTA
CCTGATATTGCAGCTCCTTCAATAAACGATTGGGACGAAATAGAAAAAGATTTTGCTGCT
ACTCTCACACCATCTGATGAAGAACGTATTCGAAGGAGATGGCAAGCTGTAATGGGATCG
CAGTATGAAATTGTTGTTGTTCAGATCAAAAAATTTAGCAAAACGAGTGGCCTCGGAATA
AGTCTAGAAGGAACAATAGATGACAGCGATCAACCGCATCACTACATTAGATCTCTTTTA
CCAGAGGGTCCGGTTGGGAGAAGTGGTCAACTGAATCCCGGTGATGAGCTACTAGAGGTG
AATGGATCTCGAATACTAGGCCTTCACCATGTTGAAGTAGTTACTGTGATAAAAGAGTTA
CCACTCGATGTCTGCATTGTTTGCGCTCGTCAGTCCAATAGTTTCTTGATGCCTGCTATG
AGAAATTCCATAATCCTGGAGGAGTTTGAAGGAAGGCTTGTGGAGAGGCCTCCTTCTTCT
GTATCCAGCAGTGAATCTGAGATTTCCTTCCATGAAGAAAGAAAAAGTTCTTTGCTTGAG
TCTGAAATACAAGATCATGATGCTTCTGCGGTAGAGGACGATCAGAATGTATCCCTACCG
TACAGCCAGTATGAAGAACACCGGACAGAAAGCATATCATCAAGTTCGACAGAATCCGAG
TCTGAAGAAAGTGTTCAGTCAGATCACGAAATTAAATCTCCTACAATATATGTGAAAGAT
GATGCTCCTCAGAAGTTAGATGAAGAGGATGTGAAAAGTGCCTGGGAAGATGAAGTAACT
TACATAGATCTCCTAAAGGGAAACGAAAGCCTCGGGTTCAGTATCTTGGATTTCCAAGAT
CCTATTCATCCTGATCGCACTGCTATTCTCGTGAGAACTTTAGTGGAAGGAGGCACTGCC
GACAGGGATGGTCGTCTTGAACCCGGTGACAAGCTGATGTATGTTAACAACATATCACTG
AAGAACGAAAGCCTTGAAAATGTAGTGGTAGTATTAAAAAGTGTCCGACCTGGCATTGTG
AGGATCGGGGTGCTAAAACCGAAGCCGGTTTTCCGGGTTCTCGCTGAAGACAATTCTATG
ACTATTAAAGATGAACCCATTCCGCCACAGCGAAAAATATCATCATCTTCTTCCGAAAGC
AGTGTAAGAGAAGAGATCAGTCACTCATCTTACAAAGCTGCAAAAGAACAAGCTGAGCAT
AACATAGCATATGCATCAAGCAGTTCCTCCTCCTTGAGTGAGCCTAGTGTTGCATCCAGG
CAACATCAGGAGTTCACTGGATTTCATCGAAATATTGAGACAGCACAGGTGCCAGTATCC
AGTTACCATCAGAGAGAAGCTGTAAACATCCAGAAACCAGCCGAGTTCATTCCTGTTCCA
CAAAGCTCAGCGTATTTCCGATATGAACCTGTTCGTCAACCTGGCATCGCTTCGTCCAGT
CAATCTGATATATCGTCTGCAGGACTCAGGTCTCCTAGCCTCGTTACTCAATCTTCCTCT
GGGAATACATCAGCAGAGGAGCGCAAGATGGAAGTGAGACAAGTTCAGGTATCAGGCATG
ACTGCGATAGCAATTACGAGTAGCTTAACATCGCATAATCCGTATAAGCCTCGTGAACCT
ACCGTAAGTGTGCAGCAATCATATGAACGGTCATCATCTACTGAACATTCTGGATCAGAA
TATTCTCAGCCTCCTCGTACGAGTCCTGTTCCTCTCGTGCCTCCTAAACCGGTCGGATAC
TCAGCTCCATCATGGCAAAAGGGTGGGGATACATTTTCTCCTGTTCCAATTTCCACAGAA
ATGTATGAAAAGACAGTTGAGATAAGCAAAGGAAGGGAAGGTCTTGGCATTACAGTTAGC
CCTGACAGAGATGGAGACGGTTTAATAATCGGATCTATCGTAGCCGGTGGTTCAGTTTTC
AAAGCCGGTAACCCAAAGCTTGGTGATATAATACGCCGTATAAATAATGACTCTGCTGTT
GGACTGGGTGCCATGCAAGCCCGGGCTCTCATTAAGAACCATTCTTCGTTCAGTGATGAT
GTTAAAATTATATACATTCCAAAAGAATACATAACTTCGTTCAAGAAAGGCATTCCTCCA
CCTAAGATCATTGAACGTGTCCCTTCGGACAATGCTACAAATACTCAAACTGCTAGCAGA
AGTGTGTCATCTATTAAATCCAAATTTGAAATTCCTAATCCTGAAAGGCCTAGCTCACCA
CCCGTAAATGTTAGCGAGAGATTACAGAAGTACAAACAAACAAAAGGAGACCTCCACTAT
ATTGAGCTGGAAAAAGGAGCAAATGGTCTGGGACTTAGTCTGGCTGGTAATAAGGAAAAG
GCTCAGCAGAGCATCTATGTTGTTGGTATTAATCCAGAAGGAGCAGCAGGGAAAGATGGA
CGTATTAAAGTGGGAGATGAATTACTCGACATAAACGGCGTCGCATTGTCGGGGCAAAAC
ACACACCAGATCGCGATGAATGTCATTAGATCTAATTCACACCTCGGAATCATATTATGT
CGTAACAATACTTCAGTAACTCCACTGGAAAGTGTTCAAAAAGAAAAAGCTGCACCTCAG
CATTTTCAATATCCATCAAAACCAGTGAATCCAAAAACAGTCCACAGCTCTAGCTCATCG
GCCACATCATCATCATCCAATCTCGATAACGCACGAGTTATCAAACTTGTTAAAGATTTT
CAGGGTTTAGGTTTTGCTATCGCAGAAACAGTTAATGGTATAGTGGTGCAGTCCATTGCC
AATGGGGGCACTTCAGACAGAGATGGACGTTTAAAAACTGGAGATTACATAGTTGCCGTT
GATTCCACTTCGCTTGAAGGAATGTCGTATGAAAGTGCTGTGAGGATTTTAAAAGAATCG
CGCGGTACTGTTAAGCTCACAGTTTCTTCGGAACCGCAATTATCAGGTAATGCTCCAAAC
CAAAGTCCTTCGCTCAACCTGCTCACCTGTCCTATAATCAGTGGTAAAGAGATGACCATT
GAAATCATGAAAGGAAAATCAGGACTCGGGGTTAGTATTGTTGGTGGCTCAGATAGCTTG
TTGGGCTCTATTCTGGTACACACGGTATATGATGAAGGCGCAGCAGCAAGAGATGGTCGT
CTATGGCCCGGGGATCTAATTTTGAACGTGAATGAACATGATTTGAGGACTGCTACCCAT
GATCAGGCTATAGAGGTTTTACGGAACACTCCAAGTCGAGTGAAACTCGTAATTCTGAGA
GAGGAGAACAAGGACCCACCAAAGGTTGACCATGATATCCAGACATTGGATGTGCAGTTG
GAGAAAAGAGCTGACAGAGGATTGGGACTTAGTATACTGGGCAGATCAAAGGAAGGAGGC
GGGGTATATGTCAGTAATATTGTACCGCATGGCGCAGCCGATATGGAAGGTTCTATTAGA
CCTGGGGATCAAATTTTAGCCTTTAATGGAATAAATATGCAACATGCAACACAGGATGAT
GTTGCTCAAGCACTGAAACATGCCAAGGGTTTAATTCATTTTAAGATAGGAAGATGTCAT
GTAGGCGGCGTTTCCAAATCAACTGCTCCATTTATTCCAATGGCATTGTCCAGCAAAGAG
CAAAAATCTGACTTAGGTGCTTCGAGAAGCAGTAGCTCTTCAAAAGAAGAATGTAAAGAA
AATGAAAGATTCGTTGAAATCAAAAAGGGACCTTCACAACCGTTAGGTATCAGCATATCT
GGTGGTGTTGGATCTCCCCTTGGTAACGTTCCTGTATTCGTTGCTATGGTTCAACAAAAC
GGGGCCGCAGAAGGCAAACTGGATATTGGCGATAATATACTCAGTATCAATGGTCAATCA
ACAGAAAACAAAACGCATGATGACATCGTACGAATGCTGAAAGGTTCAGATGATTCAATC
GTTTTGCTGAAAGTACGAAAAGGTGAACAAGATATCAGGTCACTCAGCGAATACTTAGCT
GAAACGGCAAACACTATGTCAAACATGCTTGCATCGTCTATGCCAGATATAACGGCAGAG
AGTAATTTTTATCAGCCGCAGGATTCTGACTTAAGCTTACAGTCCCAAAGGCTCATACTC
ATCACTCTTGACAGAGGAACAGATGGTTTAGGCTTCAGTGTGGTGGGTGGTATGGGCTCG
ATGTACGGCGATCTGCCTATTTTTGTAAAATCTGTCTTCAACGTTGGAGCTGCAGCCAGA
GACGGTCGTTTAAAGAAAGGGGACCGCATTGTCGCTGTCAATGGGGAAAGCTTAGATGGA
AGCACACATCCGGAAGCAGTCACAATACTAAAAAATGCAAAGGGCAAAGTGGTGCTGGAA
GTAGTGGCATCTTAA

InterProScan

SUPERFAMILY
PDZ_sf (IPR036034) - T[60-161] 7.89E-23 - T[212-316] 3.81E-18 - T[432-532] 5.39E-19 - T[774-869] 1.25E-12 - T[917-1028] 8.41E-18 - T[1048-1152] 1.04E-22 - T[1167-1263] 3.81E-26 - T[1273-1359] 7.76E-21 - T[1391-1491] 5.39E-23 - T[1528-1622] 4.47E-27
ProSiteProfiles
PDZ (IPR001478) - T[70-163] 20.647 - T[226-312] 17.049 - T[441-514] 16.044 - T[785-853] 12.667 - T[940-1023] 17.772 - T[1073-1152] 20.003 - T[1179-1262] 21.551 - T[1277-1360] 19.662 - T[1404-1488] 19.4 - T[1540-1624] 22.194
Pfam
PDZ (IPR001478) - T[76-159] 1.3E-14 - T[229-300] 6.5E-11 - T[444-516] 1.4E-7 - T[786-856] 2.3E-7 - T[942-1010] 3.0E-10 - T[1081-1148] 6.9E-12 - T[1180-1259] 4.2E-14 - T[1278-1356] 9.1E-14 - T[1406-1483] 1.1E-14 - T[1541-1621] 1.8E-15
SMART
PDZ (IPR001478) - T[78-163] 2.3E-21 - T[236-312] 7.4E-13 - T[449-528] 5.0E-15 - T[793-869] 1.1E-5 - T[948-1023] 1.5E-12 - T[1081-1152] 8.0E-19 - T[1187-1262] 9.6E-21 - T[1286-1360] 2.9E-18 - T[1413-1489] 5.2E-15 - T[1548-1624] 8.1E-19

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
MPDZ_HUMAN 43.25 % 517 1.77E-153
INADL_HUMAN 39.91 % 276 5.28E-75
LNX2_HUMAN 30.545 % 182 1.53E-47