- Transcript 'Cisavi.CG.ENS81.R16....' >
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- Transcript 'Haaura.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S1458.g08367.01.t
Possible name(s)
COL4A1; COL4A2; COL4A6
Gene model
Location
S1458 [1,815 / 5,118]
Amino acid sequence
Length: 637
>Haaura.CG.MTP2014.S1458.g08367.01.p
QKKRRHKKGDAIKAPCSGRDCRNLGPCGFCVSEKGNRGFPGKQGNVGDNGLLGLSGPEGL
MGPKEGKGYPVKHGPRGEPGAKGQTGPPGNAGSHGLSGYPGEHGPVGFPGVDGRNASAGD
VGSRGSDGRPGRPGFTGVPGDFGQKGEPAIFSDESMIKGEIGENGPFGPGGRPGPAGPVG
LMGPRGYEGPIGPPGPAGSKGMKGDLGQEVIGYQGERGERGSVGSTGGPPDFSEGKPPGF
SGPTHGLPGRNGSRGENGGKGEPGEEGRQRPPGSRGMEGMTGEKGGRGFAGACGPHGIQG
ANGRDGFKGKIGEQGRPGGEGDQGFKGQRGEFGPDGLSGLPGLEGLNGPRGPPGFPGSVG
ERGMRGEPGLQGLNGFPGSVGDRGLTGLPGLTGLPGPPGTGLKGRDGLRGLSGNQGVNGR
PGTPGPKGARGKDGKPGLSIEGEKGNGGMDGLDGLMGLNGSRGMAGQPGKPLNQGGDVVG
QAGEPGTRGLKGIRGVQGRNGLSGSEGSRGERGGECDCSDAVGERGEKGKVGPPGFPGTN
GRPGIPGREGERGEQGNSGRMGAPGLNGLIGRAAPEGHPGLKGEPAELGDIIAEKGESGL
PGGQGPPGFDGLPGAIGLPGRPGARGEKVSQDFYLF*
Nucleotide sequence
Length: 1,965
>Haaura.CG.MTP2014.S1458.g08367.01.t
CAGAAGAAGAGGCGACACAAAAAGGGGGATGCAATAAAAGCACCATGCAGCGGAAGAGAC
TGCAGAAATCTGGGTCCATGTGGATTCTGTGTTTCTGAAAAAGGAAATAGGGGTTTTCCG
GGAAAACAAGGCAACGTAGGAGACAACGGCCTACTTGGATTATCGGGACCAGAGGGACTA
ATGGGCCCGAAAGAAGGTAAAGGCTACCCTGTAAAGCACGGACCTCGTGGAGAACCCGGT
GCAAAGGGTCAAACAGGGCCACCGGGAAATGCAGGATCACACGGGTTATCGGGGTATCCC
GGAGAGCACGGTCCCGTCGGCTTTCCTGGAGTGGATGGTCGCAACGCCTCAGCTGGAGAT
GTTGGGTCAAGAGGATCCGACGGCCGACCAGGTCGACCTGGTTTCACGGGAGTTCCTGGT
GACTTTGGGCAAAAGGGAGAACCAGCAATTTTCAGTGACGAATCTATGATAAAAGGTGAA
ATAGGTGAAAATGGCCCCTTCGGTCCAGGAGGGAGACCAGGACCCGCAGGGCCTGTTGGA
CTTATGGGTCCAAGAGGTTATGAAGGACCTATTGGTCCTCCGGGTCCAGCCGGATCTAAG
GGAATGAAAGGCGATCTTGGACAAGAGGTTATAGGTTATCAGGGAGAGAGAGGCGAGAGA
GGAAGTGTTGGATCTACTGGTGGACCACCTGATTTCTCAGAAGGAAAACCACCAGGATTT
TCTGGACCAACACATGGCTTACCTGGTCGAAATGGAAGCAGGGGTGAAAATGGTGGAAAA
GGCGAGCCTGGCGAAGAAGGTCGGCAAAGGCCTCCTGGATCCCGGGGAATGGAAGGAATG
ACAGGTGAGAAAGGGGGCCGGGGATTTGCAGGCGCCTGTGGGCCACATGGCATTCAGGGT
GCGAATGGCCGAGATGGTTTCAAAGGAAAAATCGGAGAGCAAGGTCGACCTGGAGGAGAG
GGAGATCAGGGATTCAAGGGACAAAGGGGAGAATTTGGACCGGATGGGTTGTCGGGACTT
CCAGGACTTGAGGGTCTTAATGGTCCCAGAGGTCCTCCAGGCTTTCCAGGTTCTGTAGGT
GAAAGAGGTATGAGAGGAGAACCTGGACTACAAGGACTTAATGGATTCCCTGGATCAGTC
GGAGACAGAGGTCTTACTGGATTACCTGGTCTCACTGGTTTACCCGGTCCTCCCGGTACC
GGATTAAAAGGGAGAGATGGTCTTCGAGGTCTTAGTGGCAATCAAGGTGTCAATGGAAGA
CCAGGTACCCCAGGCCCAAAAGGGGCTCGTGGAAAAGATGGTAAGCCGGGGCTTTCAATT
GAGGGAGAAAAGGGAAACGGTGGCATGGATGGATTAGATGGATTGATGGGATTAAACGGA
TCTAGAGGAATGGCTGGACAACCTGGCAAACCTCTCAATCAGGGAGGAGATGTAGTTGGT
CAGGCTGGGGAACCAGGCACACGAGGTCTTAAGGGAATCAGAGGCGTGCAAGGGCGCAAT
GGATTAAGTGGATCAGAAGGATCAAGAGGTGAAAGAGGTGGAGAATGTGACTGCAGTGAT
GCTGTTGGGGAAAGAGGCGAAAAAGGAAAAGTTGGTCCACCTGGTTTCCCTGGAACAAAT
GGTCGACCAGGAATACCTGGACGAGAAGGAGAAAGAGGAGAACAGGGTAACTCTGGTCGA
ATGGGTGCTCCAGGGCTCAATGGTTTAATCGGACGCGCGGCACCTGAAGGGCATCCTGGA
CTAAAAGGTGAGCCAGCAGAACTAGGCGATATAATTGCCGAGAAAGGGGAATCTGGTCTT
CCTGGAGGTCAGGGTCCCCCTGGCTTTGATGGACTACCAGGTGCTATAGGACTACCAGGA
CGGCCTGGAGCGAGAGGAGAGAAGGTGAGTCAAGATTTTTATCTATTCTAATTACCGATG
GTTAACAATCCTCAATATTTGAAAGGGGGAAATAGGTCCTCACGG
| Pfam |
Collagen (IPR008160) - T[89-148] 9.5E-9 - T[158-208] 1.9E-6 - T[294-352] 9.9E-7 - T[342-400] 5.7E-10 - T[526-584] 3.0E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COOA1_HUMAN | 37.867 % | 170 | 2.8E-44 |
| CO4A2_HUMAN | 38.117 % | 169 | 9.42E-44 |
| CO4A6_HUMAN | 36.966 % | 177 | 1.68E-46 |