- Transcript 'KH2012:KH.S555.1.v1....' >
- Transcript 'Haaura.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S1458.g08367.02.t
Possible name(s)
COL4A1; COL4A2; COL4A6
Gene model
Location
S1458 [1,815 / 10,192]
Amino acid sequence
Length: 1,766
>Haaura.CG.MTP2014.S1458.g08367.02.p
QKKRRHKKGDAIKAPCSGRDCRNLGPCGFCVSEKGNRGFPGKQGNVGDNGLLGLSGPEGL
MGPKEGKGYPVKHGPRGEPGAKGQTGPPGNAGSHGLSGYPGEHGPVGFPGVDGRNASAGD
VGSRGSDGRPGRPGFTGVPGDFGQKGEPAIFSDESMIKGEIGENGPFGPGGRPGPAGPVG
LMGPRGYEGPIGPPGPAGSKGMKGDLGQEVIGYQGERGERGSVGSTGGPPDFSEGKPPGF
SGPTHGLPGRNGSRGENGGKGEPGEEGRQRPPGSRGMEGMTGEKGGRGFAGACGPHGIQG
ANGRDGFKGKIGEQGRPGGEGDQGFKGQRGEFGPDGLSGLPGLEGLNGPRGPPGFPGSVG
ERGMRGEPGLQGLNGFPGSVGDRGLTGLPGLTGLPGPPGTGLKGRDGLRGLSGNQGVNGR
PGTPGPKGARGKDGKPGLSIEGEKGNGGMDGLDGLMGLNGSRGMAGQPGKPLNQGGDVVG
QAGEPGTRGLKGIRGVQGRNGLSGSEGSRGERGGECDCSDAVGERGEKGKVGPPGFPGTN
GRPGIPGREGERGEQGNSGRMGAPGLNGLIGRAAPEGHPGLKGEPAELGDIIAEKGESGL
PGGQGPPGFDGLPGAIGLPGRPGARGEKGEIGPHGKNGKMGAKGSHGEIGNTGKPGDDGI
GFPGPAGLKGRQGDEGFTGVMGQRGLKGEQGEIIMGDMVKGSKGLSGLPGSPGIHGQKGD
KGGSGISGVNGFPGRDGPPGIVGSPGSSARPGEKGFSGPRGDKGRAGIPGDDGLKGRTGR
NANAGAPGAKGEKRISGIRGPPGVTGPKGYIGRQGLKGESGSDGPLGLTGFSGNPGLPGQ
NGSAGATGPQGRQGPPGQKGVSAFEGRAGEKGSSGPQGLPGLTGGPGPKGEIGPTGSPAT
GKFKGPKGYPGVPGQPGHKGSPGDDGPTGDTGARGPPGFPGQNGMMGLRGLTGQPGPPGS
RGDGGAKGNTGSSGIPGLQGRTGLKGMIGDYGRFGEKGQKGQPGPSIGLDNLSVRVKVEI
GTKGEPGSDGLAGLLGFVGKPGIPGMRGEAGLKGDRGEPGITGANGLSGLAGVNGLLSED
GERGPPGYIGPSGPHGEPGDVGLPGPMGEMGPPGPKGTQGLPGPEGFPGNLGRDGYNGRD
GRLGLNGTRGFPGPLGIPGMPGNKGGRGDRGTSGTSGAPGLKGKDGIEGSQGRDGLQGRP
GFTGASGEKGSRGDTGLNGIEGLNGLNGNKGENGSPGLSIVPGAPGIIGMQGFTGIKGDA
GPPGDQGRDGRPGEPGMQGLTGLQGRQGETGLIGLPGVSGEKGELGLDGKEGIPGPPGPP
GLEGLLGAIGRQGMKGSRGMVGEDGGYGEDGLPGQFGVRGPQGLAGLLGNKGSKGAPGLQ
GFPGILGGKGEQGLPGQAGRPGYPGIRGDSGPKGDPGKSIEPTYLPPGPKGEEGHRGLPG
LPGTIGPHGPKGIHGFHGEPGITGVDGLHGIPGPRGERGSYGPAGLTGPRGFRGIDGSKG
SKGTSGVAGKIRPPGHLLVRHSQTVDVPECPTGMNKLWEGYSFFYLEGSEKAHNQDLGST
GSCLRRFSAMPFLYCNINNVCKYASKNDKSYWLSTTAAIPMIPVEEGVEVHISRCSVCEA
RSVAMAIHSQTTDIPDCPGGWSGLWFGYSFVMHTIAGAQGVGQSLSSPGSCLEDFQTSPF
IECNGARGYCFYYNNQYSFWLTAIPADKLLESQKKETLKAGNLRTRLGSHSKIASCFHHV
KQPSNIIFKPPSFVIRYLSEHNYCR*
Nucleotide sequence
Length: 5,298
>Haaura.CG.MTP2014.S1458.g08367.02.t
CAGAAGAAGAGGCGACACAAAAAGGGGGATGCAATAAAAGCACCATGCAGCGGAAGAGAC
TGCAGAAATCTGGGTCCATGTGGATTCTGTGTTTCTGAAAAAGGAAATAGGGGTTTTCCG
GGAAAACAAGGCAACGTAGGAGACAACGGCCTACTTGGATTATCGGGACCAGAGGGACTA
ATGGGCCCGAAAGAAGGTAAAGGCTACCCTGTAAAGCACGGACCTCGTGGAGAACCCGGT
GCAAAGGGTCAAACAGGGCCACCGGGAAATGCAGGATCACACGGGTTATCGGGGTATCCC
GGAGAGCACGGTCCCGTCGGCTTTCCTGGAGTGGATGGTCGCAACGCCTCAGCTGGAGAT
GTTGGGTCAAGAGGATCCGACGGCCGACCAGGTCGACCTGGTTTCACGGGAGTTCCTGGT
GACTTTGGGCAAAAGGGAGAACCAGCAATTTTCAGTGACGAATCTATGATAAAAGGTGAA
ATAGGTGAAAATGGCCCCTTCGGTCCAGGAGGGAGACCAGGACCCGCAGGGCCTGTTGGA
CTTATGGGTCCAAGAGGTTATGAAGGACCTATTGGTCCTCCGGGTCCAGCCGGATCTAAG
GGAATGAAAGGCGATCTTGGACAAGAGGTTATAGGTTATCAGGGAGAGAGAGGCGAGAGA
GGAAGTGTTGGATCTACTGGTGGACCACCTGATTTCTCAGAAGGAAAACCACCAGGATTT
TCTGGACCAACACATGGCTTACCTGGTCGAAATGGAAGCAGGGGTGAAAATGGTGGAAAA
GGCGAGCCTGGCGAAGAAGGTCGGCAAAGGCCTCCTGGATCCCGGGGAATGGAAGGAATG
ACAGGTGAGAAAGGGGGCCGGGGATTTGCAGGCGCCTGTGGGCCACATGGCATTCAGGGT
GCGAATGGCCGAGATGGTTTCAAAGGAAAAATCGGAGAGCAAGGTCGACCTGGAGGAGAG
GGAGATCAGGGATTCAAGGGACAAAGGGGAGAATTTGGACCGGATGGGTTGTCGGGACTT
CCAGGACTTGAGGGTCTTAATGGTCCCAGAGGTCCTCCAGGCTTTCCAGGTTCTGTAGGT
GAAAGAGGTATGAGAGGAGAACCTGGACTACAAGGACTTAATGGATTCCCTGGATCAGTC
GGAGACAGAGGTCTTACTGGATTACCTGGTCTCACTGGTTTACCCGGTCCTCCCGGTACC
GGATTAAAAGGGAGAGATGGTCTTCGAGGTCTTAGTGGCAATCAAGGTGTCAATGGAAGA
CCAGGTACCCCAGGCCCAAAAGGGGCTCGTGGAAAAGATGGTAAGCCGGGGCTTTCAATT
GAGGGAGAAAAGGGAAACGGTGGCATGGATGGATTAGATGGATTGATGGGATTAAACGGA
TCTAGAGGAATGGCTGGACAACCTGGCAAACCTCTCAATCAGGGAGGAGATGTAGTTGGT
CAGGCTGGGGAACCAGGCACACGAGGTCTTAAGGGAATCAGAGGCGTGCAAGGGCGCAAT
GGATTAAGTGGATCAGAAGGATCAAGAGGTGAAAGAGGTGGAGAATGTGACTGCAGTGAT
GCTGTTGGGGAAAGAGGCGAAAAAGGAAAAGTTGGTCCACCTGGTTTCCCTGGAACAAAT
GGTCGACCAGGAATACCTGGACGAGAAGGAGAAAGAGGAGAACAGGGTAACTCTGGTCGA
ATGGGTGCTCCAGGGCTCAATGGTTTAATCGGACGCGCGGCACCTGAAGGGCATCCTGGA
CTAAAAGGTGAGCCAGCAGAACTAGGCGATATAATTGCCGAGAAAGGGGAATCTGGTCTT
CCTGGAGGTCAGGGTCCCCCTGGCTTTGATGGACTACCAGGTGCTATAGGACTACCAGGA
CGGCCTGGAGCGAGAGGAGAGAAGGGGGAAATAGGTCCTCACGGAAAAAATGGTAAAATG
GGAGCTAAGGGATCTCACGGTGAAATAGGAAATACTGGAAAACCTGGAGATGACGGGATT
GGATTTCCTGGTCCTGCTGGTTTGAAAGGAAGGCAAGGCGACGAAGGTTTTACTGGCGTA
ATGGGTCAAAGAGGCCTGAAAGGTGAACAAGGTGAAATTATTATGGGCGATATGGTAAAA
GGGAGTAAGGGTCTATCGGGACTTCCTGGGTCTCCTGGAATACATGGGCAGAAGGGAGAT
AAAGGAGGTTCGGGAATTTCAGGTGTGAATGGCTTCCCAGGAAGAGATGGTCCTCCAGGT
ATTGTCGGGTCACCAGGTTCCTCCGCAAGACCAGGCGAAAAAGGGTTCTCTGGTCCCCGT
GGAGATAAGGGGCGAGCTGGTATTCCCGGAGACGATGGACTAAAAGGACGCACTGGAAGA
AATGCGAATGCAGGAGCACCTGGAGCCAAAGGAGAGAAAAGAATATCAGGAATCCGTGGA
CCACCTGGTGTTACTGGTCCTAAAGGATATATCGGGAGACAAGGACTAAAAGGGGAATCG
GGATCAGATGGGCCTCTTGGTTTAACTGGCTTTTCTGGTAATCCTGGTTTACCTGGACAG
AATGGATCAGCAGGTGCAACAGGTCCTCAAGGAAGGCAAGGGCCACCAGGTCAAAAAGGA
GTATCAGCATTTGAGGGCAGAGCAGGAGAAAAAGGTTCATCAGGACCCCAAGGTTTACCG
GGATTGACAGGTGGACCCGGACCGAAAGGAGAGATAGGACCAACAGGTTCTCCTGCTACT
GGAAAATTCAAGGGCCCTAAAGGATATCCTGGAGTACCTGGTCAGCCAGGACATAAAGGG
TCACCTGGAGATGATGGCCCTACTGGTGATACCGGTGCGCGGGGACCACCCGGTTTCCCT
GGTCAGAACGGAATGATGGGATTAAGAGGACTTACAGGTCAGCCAGGTCCTCCAGGTAGC
AGAGGCGATGGTGGTGCTAAAGGTAATACAGGATCCTCTGGAATTCCTGGTCTGCAAGGG
CGAACCGGACTGAAAGGGATGATAGGAGATTACGGAAGATTTGGAGAGAAAGGACAAAAG
GGTCAGCCTGGTCCATCTATTGGACTAGATAATTTAAGTGTTAGAGTTAAAGTAGAAATT
GGCACTAAAGGAGAGCCAGGCTCTGATGGATTGGCAGGATTACTCGGTTTTGTAGGAAAA
CCTGGTATTCCCGGTATGAGAGGAGAAGCGGGTCTTAAAGGTGATCGTGGAGAGCCCGGT
ATAACTGGTGCAAATGGACTGTCAGGCTTAGCAGGAGTCAATGGTCTTCTTAGTGAAGAT
GGTGAACGTGGGCCACCTGGTTACATAGGGCCCTCAGGACCACATGGAGAACCAGGAGAT
GTAGGACTGCCTGGACCAATGGGTGAAATGGGGCCACCCGGACCTAAAGGAACACAAGGC
CTACCTGGGCCCGAAGGCTTTCCTGGAAATCTTGGCCGAGATGGATATAATGGGAGAGAT
GGAAGACTGGGTTTGAATGGCACTAGAGGATTTCCTGGCCCACTCGGGATACCTGGTATG
CCAGGTAACAAAGGAGGGAGAGGAGATCGAGGGACTTCAGGCACTTCAGGTGCACCTGGA
TTGAAAGGGAAAGATGGTATCGAAGGTTCACAAGGTAGAGATGGTTTACAGGGAAGACCT
GGATTTACCGGAGCATCAGGAGAAAAAGGATCCCGAGGTGATACTGGACTGAATGGTATT
GAGGGACTAAATGGTTTGAATGGTAATAAAGGAGAAAATGGGAGCCCGGGTCTATCGATA
GTGCCGGGTGCTCCTGGAATAATTGGCATGCAAGGATTTACGGGAATCAAGGGAGATGCT
GGCCCTCCTGGTGATCAGGGACGTGACGGCAGGCCTGGTGAGCCAGGAATGCAAGGATTG
ACAGGGCTTCAGGGTAGACAAGGAGAAACAGGGTTAATAGGACTACCTGGGGTCAGTGGA
GAGAAAGGGGAGCTAGGACTGGATGGAAAAGAAGGAATTCCCGGACCACCTGGACCACCT
GGACTGGAAGGCCTACTGGGTGCCATAGGTAGGCAAGGGATGAAAGGAAGCAGGGGCATG
GTAGGAGAAGATGGCGGGTATGGAGAAGATGGTTTACCTGGACAGTTTGGAGTAAGAGGA
CCACAAGGACTTGCTGGATTATTGGGAAACAAGGGAAGCAAGGGAGCGCCTGGATTGCAA
GGATTCCCAGGCATTCTTGGAGGGAAAGGAGAACAAGGACTACCCGGACAGGCTGGAAGA
CCGGGTTATCCCGGCATACGGGGTGATAGCGGACCAAAAGGTGATCCCGGAAAATCCATT
GAACCAACATATCTACCACCCGGGCCAAAAGGGGAAGAAGGGCACAGAGGTCTTCCTGGT
TTACCTGGGACAATTGGGCCTCATGGACCAAAAGGAATTCATGGATTTCATGGGGAACCT
GGGATAACAGGTGTTGACGGACTACATGGAATTCCTGGACCACGTGGAGAGAGAGGTAGT
TATGGTCCAGCTGGTCTCACAGGCCCAAGAGGTTTCAGAGGAATTGATGGCTCAAAAGGC
AGTAAAGGAACATCAGGTGTAGCAGGTAAAATTCGTCCACCAGGTCACTTGCTTGTTCGA
CACAGTCAAACAGTTGATGTGCCAGAATGTCCAACAGGAATGAATAAATTGTGGGAAGGA
TACAGCTTTTTCTATCTGGAAGGAAGTGAAAAGGCTCACAATCAAGATTTAGGTTCCACT
GGCTCCTGTTTGAGAAGATTCAGCGCAATGCCATTCCTGTACTGCAACATTAACAATGTC
TGCAAGTATGCAAGTAAAAATGATAAGTCTTACTGGCTTTCGACCACCGCTGCAATACCT
ATGATACCTGTTGAGGAAGGAGTTGAAGTACACATCAGCAGATGTTCTGTCTGTGAAGCT
AGATCAGTGGCGATGGCGATCCACAGTCAGACAACCGACATTCCAGACTGTCCAGGAGGA
TGGTCAGGTCTATGGTTTGGTTACAGTTTTGTCATGCATACAATAGCAGGTGCACAAGGT
GTAGGACAATCTTTATCCAGCCCCGGATCTTGCCTAGAAGATTTTCAGACATCTCCGTTC
ATTGAGTGCAATGGGGCACGGGGATACTGTTTCTATTACAACAACCAGTACAGTTTTTGG
CTTACGGCGATACCAGCAGACAAACTGTTAGAATCACAGAAAAAGGAGACTTTAAAAGCA
GGCAATCTGAGAACAAGATTGGGAAGTCATTCAAAAATTGCTTCGTGTTTCCATCATGTG
AAGCAACCAAGCAACATAATATTTAAACCGCCATCATTTGTGATCCGTTATTTGTCCGAG
CATAACTATTGCAGATAA
| Pfam |
Collagen (IPR008160) - T[89-148] 2.7E-8 - T[342-399] 3.1E-9 - T[526-584] 9.7E-8 - T[635-692] 1.7E-6 - T[700-753] 8.2E-7 - T[797-852] 1.2E-6 - T[839-897] 6.0E-7 - T[904-960] 1.7E-9 - T[947-1005] 8.8E-8 - T[1021-1075] 3.0E-9 - T[1080-1135] 2.5E-8 - T[1132-1190] 1.9E-8 - T[1180-1237] 1.6E-8 - T[1255-1306] 1.6E-7 - T[1357-1415] 6.5E-8 - T[1427-1479] 2.9E-8 - T[1458-1515] 1.6E-8 |
| Gene3D |
Collagen_IV_NC_sf (IPR036954) - T[1513-1740] 4.8E-97 |
| SMART |
Collagen_IV_NC (IPR001442) - T[1515-1621] 7.9E-61 - T[1622-1739] 6.1E-46 |
| ProSiteProfiles |
Collagen_IV_NC (IPR001442) - T[1515-1743] 92.144 |
| Pfam |
Collagen_IV_NC (IPR001442) - T[1517-1619] 9.1E-36 - T[1624-1725] 4.5E-34 |
| SUPERFAMILY |
CTDL_fold (IPR016187) - T[1517-1622] 2.35E-40 - T[1623-1727] 1.25E-34 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO4A2_HUMAN | 44.344 % | 548 | 3.49E-165 |
| CO4A1_HUMAN | 40.175 % | 492 | 1.18E-145 |
| CO4A6_HUMAN | 41.247 % | 634 | 0 |