Aniseed - Transcript Card

Sequences

Amino acid sequence

Length: 946

>Haaura.CG.MTP2014.S14.g00424.01.p
MIRFKSVGVIFFITYIVAFTTAIPYRSSSYDFTCNLTPTATGRLPPPRPSDNGFSVKLEG
KPEYYSPEKTYTVTLRSTHPVTFRGFALTAVSVRDPARPAGSFKILNPWSTKYMLSCPNV
VTHATAGKKGSAQFVWTSPSSGFGCVRVTASVIQKGTIWFKGDEDLSTEICEATESSDVD
AVPECCSCGVASYRMTFYGMWSPQSHPKVYPQHSTHWSNVIGASHDENYVIWDYGTYASD
GVRKVAEWGWPNALEDEIRGQGQSVRSVIKTRAQWPAYQPRNIREPPSSLLEVDTDRHLV
SLVTMLGPSPDWNVGITKESMCTAECGWEAEKIYDLTPWDAGTDSGITYISANSPTNPPE
KIRALTSIDDEQSPFYNASGGPIPPLARLVLTRLAISGEQCGTSPTMRPSTSAINTNVRS
DIGIDTAVQTSCMYAGWSKWSSCAVTCGWGIKTRTKMLKRQLLPSASCESSIMEKEICKG
AATCDNEDLNTICLYSEWSEWSACTCENEALRFRTRALKWPSEESSCHEPLKEMKFNCPA
TPCEATASDGCTYSKWMDWMPCTPQCGIGETLRKRFVTKGERCSLPIMETTKCMTSSDCS
DPVGFDIPSGCNYSPWTGWMPCPVSCGPGQTFRKRVLISSVPSVHCKEIQMDNTECLTSA
TCPQTLDVAVEKKCIYSDWSDWMACSASCDVGNTQRKRSLKISSTGSSCKEMHVVTVKCY
MPPCHAMSPDFEGQSEVRKKNCIYGPWTAWMSCSVTCGKGETLRKRFLVKSLDTSRSCEG
FVMESNACTVPVPCGDSLIVVGEHVEAPFVPDDTSSQLVDPEIDCSDITWGDWSRCSATC
GTSTRSRYRSVPERCRRFITVRNQQQICAVPKKCPIDCLSGEWSEWSNCQSCGRSKASRH
LSKSKRDSTSAVSGWQVRTRKRLRKAKFGGASCPPRKEKRKCRCE*

Nucleotide sequence

Length: 4,324

>Haaura.CG.MTP2014.S14.g00424.01.t
ATGGGAAACGGATCTAGTACAATGTCAACTGAGGACAAGAATGTTAGATCTTTCAACGGA
CATGCTTCACACATGAACTCAAGCAAATTGAAAACTAAAAAAGTATCCTACAGACCAGCA
TATTCAGATGAGCAACAATGTCAAGGCACAGGATCATCAATTACCAAGAGTGTCACTTCC
GGAGGTGTGAAGCCAGTGTGTGGGGGCTTGCCCTGCCCAGAAAATATATCTGATTCTGAT
ACAAATAGCTTGATTTTTACATCTGACTGCTGGGATTCTGATCAAAGCAGTTGTGGATAT
CCAGCACTTGCAAATCTTTCTAGCAATGCTTCTTCAAGCACCCTTTCAAGAACACATGTG
ATAGATTGTAACATTTAATGTGCTCAAATTAAGATCACAGACACCAACTACGAACTGTTC
AGAAGATGAAAGCAGTTGTAACATCGGTCCACCCAATCGAAAATCTATATTGAGAAGAAA
CAAGGACTCGACCAAAAGTACAATGAAGCCAGGGCAAAAAGCATTTATCAAATTTGTCCC
AGAACTAAAAAAAAGACCGCATACGGCTCCAGGATTTGTAGATTTGTCAATCAAACAAAA
ACAAGCAACAACATCCACTGATTCGGTATCAATAAACTCATCTAATAAATCTGAACTCCT
ATGTTCTTCTGTTGCAAGCAATGAAAAACCTGTTGATGTCAAAATTGTTGATACTAATGT
TGTTAATCGAACAGTCTATATCAATGCTAAAATAGATGCTTCCTCCCAAACAAAGCACAC
AGAAAGTGTTGGGATCCAGTGTAATCTTTTGGATAAAGGTTGTTTTTTACCCGATGCAAT
TTTGGATGTGAACGGTTTTGGAAGAGAGAAAATATTAGACTTTGCCATTGAAGCTGTGTC
TCGGTCACAACATCTAGACAAACTGAGAACTTTCTCAGCACAATCACCAAGAAGACAACT
ATCTCAAACTAGTTTTGTCAATCAGAGATGCAAATCAGCTTATGCTATTTTACTTACTCA
AACACAAATGTCCAGTGAAAGCATTGCTAACTGCCACACTACATTGACCAGTACAAGGGT
AGAAATTGAATCTACAAAAGTAATCTCAAGTGATAGTGAATCTTCTGCATTGTTGTCATC
TGATGAGTCACCCGAAGCATTTTCTACACAAATGAACAGATGCGCCAATGCGACTGAAAG
AAAATGCAAGACCTGCCGAACTAAGAAACACTGCCAGTCACTTCTGAATGAAACCTTGTA
CCAAGTGAATCACTTTTCTTCATGCACAGCCAGTAAGAGAAAAGGGTGGAGAAAATACAA
ACAAGACAATACGCAACCCATTCAGGTGGAGAATATGATGACGGAGAGTTTAAGGCAGAT
TAACAGCAGTTTGCAAGAAGCAAATAAGGTAGCCTTTCCTTGTTGAACGAACTGGTAGAA
ATGCGAACTTGAATCCAGTTGGATTCGTGAAAGTGCACATAGCGAAATGATTCGATTCAA
ATCCGTTGGAGTGATCTTTTTTATTACGTATATTGTTGCGTTTACGACTGCCATACCTTA
TCGCTCTTCTTCGTACGATTTCACATGTAACTTGACACCGACTGCAACGGGTCGATTACC
GCCCCCTCGCCCGAGCGATAATGGATTCAGTGTTAAATTGGAAGGAAAGCCAGAGTACTA
TAGCCCTGAAAAAACATACACAGTCACCCTTCGAAGCACCCATCCCGTCACTTTCAGGGG
ATTTGCTCTGACGGCAGTGAGTGTACGCGACCCCGCGAGGCCAGCTGGAAGTTTCAAAAT
ACTGAATCCGTGGTCCACTAAATACATGCTATCTTGTCCAAACGTCGTCACCCACGCTAC
TGCCGGGAAGAAAGGTTCAGCTCAGTTCGTCTGGACTTCGCCGTCGTCTGGTTTTGGATG
TGTGCGTGTGACAGCCAGTGTTATACAGAAAGGAACAATATGGTTCAAGGGAGATGAAGA
TTTATCTACGGAAATCTGCGAAGCAACGGAATCTTCTGACGTGGATGCGGTCCCCGAGTG
TTGTTCGTGTGGCGTGGCGAGTTATCGTATGACATTTTACGGTATGTGGTCGCCGCAAAG
TCACCCGAAAGTTTATCCACAACATTCAACCCATTGGTCGAACGTCATTGGTGCCTCACA
CGACGAGAACTACGTCATATGGGACTATGGGACGTATGCAAGTGACGGTGTGAGAAAGGT
AGCAGAATGGGGATGGCCCAATGCTCTTGAAGATGAAATTCGAGGACAAGGCCAAAGCGT
TCGTTCAGTGATCAAGACGAGAGCTCAGTGGCCAGCATATCAGCCTCGTAATATCCGAGA
ACCACCATCTTCCCTACTAGAAGTAGACACGGATCGTCATCTTGTTTCTCTGGTTACCAT
GTTGGGTCCCAGTCCGGACTGGAACGTTGGGATTACCAAGGAGTCGATGTGCACAGCTGA
ATGCGGATGGGAAGCGGAAAAAATATACGATCTTACACCTTGGGATGCTGGTACGGATAG
CGGAATTACTTACATATCGGCGAATTCGCCCACCAATCCGCCAGAAAAAATAAGGGCTTT
GACTAGTATAGACGACGAACAGTCGCCATTCTATAACGCCTCGGGAGGTCCTATTCCTCC
CTTAGCGAGACTGGTTCTAACTCGATTGGCAATCTCGGGCGAGCAATGCGGTACAAGTCC
AACTATGCGGCCTTCAACATCTGCTATCAATACTAATGTCAGGTCTGATATCGGAATCGA
TACCGCTGTTCAGACATCATGTATGTATGCAGGATGGTCAAAATGGTCCAGCTGTGCGGT
TACTTGCGGATGGGGTATCAAGACCCGAACCAAAATGCTAAAAAGACAGTTGCTCCCGTC
CGCATCTTGTGAGAGCTCAATTATGGAAAAGGAAATATGCAAAGGTGCAGCTACATGTGA
TAACGAAGACCTGAATACGATATGCCTTTACTCTGAATGGTCCGAATGGTCAGCATGCAC
CTGTGAAAATGAAGCTTTAAGATTTCGTACCCGTGCACTCAAGTGGCCGTCTGAGGAATC
AAGTTGTCATGAACCACTAAAAGAAATGAAATTTAACTGTCCAGCAACGCCATGCGAAGC
AACCGCATCGGACGGTTGTACTTATAGTAAATGGATGGATTGGATGCCTTGTACTCCCCA
ATGTGGAATAGGGGAAACTCTTCGCAAAAGATTCGTGACGAAGGGGGAGCGATGTTCATT
GCCCATAATGGAGACCACTAAGTGCATGACGTCATCTGATTGTTCTGACCCAGTTGGATT
TGACATTCCGTCCGGTTGCAATTATTCACCGTGGACTGGCTGGATGCCGTGTCCAGTGTC
TTGTGGTCCTGGTCAAACGTTCAGGAAGCGAGTTCTTATTTCATCCGTTCCTAGCGTGCA
TTGCAAAGAAATCCAAATGGACAACACCGAGTGCTTGACATCAGCTACGTGCCCACAAAC
GCTAGATGTCGCCGTGGAGAAAAAGTGTATTTATTCCGATTGGTCTGATTGGATGGCATG
CTCGGCATCTTGCGATGTTGGAAACACTCAACGAAAACGATCTTTGAAAATTTCTTCTAC
TGGATCATCTTGTAAGGAAATGCATGTGGTAACAGTAAAGTGTTACATGCCCCCATGTCA
TGCCATGTCGCCTGATTTTGAAGGACAATCTGAAGTTCGTAAAAAGAATTGTATCTATGG
CCCGTGGACTGCTTGGATGTCTTGTTCAGTCACGTGTGGAAAAGGAGAGACACTGAGGAA
GAGATTTTTAGTAAAATCCTTGGATACCTCTCGCTCGTGCGAAGGATTCGTGATGGAGTC
GAACGCGTGCACTGTTCCCGTACCATGTGGAGATTCACTCATTGTTGTTGGCGAACACGT
AGAAGCACCGTTCGTACCAGATGATACATCGTCTCAGTTAGTTGATCCGGAGATAGATTG
TAGTGATATCACTTGGGGGGATTGGTCAAGGTGTAGTGCTACTTGCGGTACGAGTACTCG
ATCAAGATATCGAAGTGTTCCAGAACGATGTAGAAGGTTTATAACAGTTCGTAATCAGCA
ACAGATATGTGCAGTTCCGAAAAAATGCCCGATAGATTGTCTGTCTGGAGAATGGTCCGA
GTGGTCAAATTGCCAATCTTGCGGTAGATCTAAGGCATCTCGTCATCTTTCAAAGAGTAA
ACGAGATTCTACGTCCGCAGTTAGCGGGTGGCAAGTGCGAACAAGGAAGCGGTTGAGGAA
AGCCAAATTTGGTGGTGCTAGTTGCCCACCACGTAAAGAGAAAAGGAAATGTAGATGCGA
GTGA

InterProScan

ProSiteProfiles	Reeler_dom (IPR002861) - T[19-183] 29.886
CDD	Reeler_dom (IPR002861) - T[33-162] 8.27555E-27
Pfam	Reeler_dom (IPR002861) - T[50-160] 1.3E-19
Gene3D	Spondin_N_sf (IPR038678) - T[174-372] 4.4E-66
ProSiteProfiles	Spondin_N (IPR009465) - T[181-374] 72.055
Pfam	Spondin_N (IPR009465) - T[191-385] 1.6E-65
SUPERFAMILY	TSP1_rpt_sf (IPR036383) - T[429-479] 6.41E-8 - T[551-595] 7.98E-5 - T[608-658] 3.66E-6 - T[673-724] 6.02E-8 - T[741-789] 7.85E-8 - T[823-853] 2.22E-6
Gene3D	TSP1_rpt_sf (IPR036383) - T[429-484] 5.6E-8 - T[548-594] 3.6E-5 - T[609-663] 4.5E-7 - T[671-724] 3.8E-9 - T[739-794] 5.2E-9 - T[822-875] 1.4E-5 - T[876-942] 4.9E-6
ProSiteProfiles	TSP1_rpt (IPR000884) - T[431-485] 8.968 - T[492-544] 8.963 - T[550-600] 9.338 - T[610-663] 8.957 - T[673-725] 10.103 - T[741-795] 9.923 - T[824-875] 9.649 - T[877-945] 8.732
SMART	TSP1_rpt (IPR000884) - T[434-485] 1.9E-5 - T[495-544] 1.5 - T[553-600] 0.076 - T[613-663] 0.025 - T[676-725] 3.5E-4 - T[744-795] 5.1E-4 - T[827-875] 1.1E-4 - T[880-945] 5.6
Pfam	TSP1_rpt (IPR000884) - T[437-482] 1.3E-7 - T[496-543] 0.007 - T[554-599] 6.4E-4 - T[614-662] 1.2E-5 - T[677-724] 1.5E-7 - T[745-794] 3.9E-10 - T[830-874] 9.3E-5