Aniseed - Transcript Card

Transcript 'Haaura.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S150.g02699.01.t

Possible name(s)

NDC1

Gene model

Haaura.CG.MTP2014.S150.g02699

Location

S150 [17,014 / 18,833]

Sequences

Amino acid sequence

Length: 328

>Haaura.CG.MTP2014.S150.g02699.01.p
QHLAFQHLSLISRQSLEKRQLIFALSHQAENGQPYWWNRVVDSCVDKLDKLTEQLNQHQL
MLSVNGTAGNWKTSTSSVSSNSSSEIKSDISPDVITILRRRPRSAIDASFANVPNVSCLN
VSLNNSTSLARGYSKDPTTFASNQSSFSVPTPRLWSASAKNPVCEIENSFYASSLNREDD
QNYKRKQKTKLKNFVSNLKSLPLISYFVTTMPNNLLLSLYREHNIHKWAMQSLSYLCAAS
ISEDKYGVVQTRLHEVIAALINLLVALEKLGKYPGSSVRINRLYTCLHNETKISLHRIAD
AFEDSLNAVNLSQEHRRRMQSFMTYNQ*

Nucleotide sequence

Length: 984

>Haaura.CG.MTP2014.S150.g02699.01.t
CAGCATCTAGCTTTCCAGCATCTCAGCTTAATTTCACGCCAGAGCTTGGAAAAACGGCAG
TTGATATTCGCTCTCAGTCACCAAGCAGAAAACGGCCAACCGTACTGGTGGAACAGAGTA
GTGGACAGCTGTGTTGATAAACTGGATAAATTGACTGAACAGTTAAACCAGCATCAGTTA
ATGTTATCAGTTAACGGAACTGCAGGAAATTGGAAGACTTCCACTTCTTCAGTGTCGTCC
AACAGCAGTAGCGAAATCAAATCAGACATCAGTCCTGATGTAATCACCATTCTGCGTCGT
CGCCCTCGATCTGCCATTGATGCGTCCTTCGCCAACGTCCCTAACGTTTCTTGCCTGAAT
GTTTCTCTAAATAACTCAACCAGCCTAGCTCGTGGCTATAGCAAAGATCCCACCACCTTT
GCTTCAAATCAATCATCATTTTCAGTGCCCACTCCACGATTGTGGTCCGCTTCTGCCAAG
AATCCAGTCTGTGAGATTGAAAATTCCTTTTATGCAAGCTCGTTGAACAGAGAAGATGAT
CAAAACTATAAACGAAAACAAAAAACCAAGCTGAAGAATTTTGTTTCCAACTTGAAGTCA
TTGCCATTGATCTCCTATTTTGTTACCACGATGCCAAACAATCTCTTACTCAGTTTGTAT
AGAGAGCATAATATCCACAAGTGGGCAATGCAGAGTCTGTCTTACTTATGTGCCGCCTCA
ATTTCGGAAGACAAATATGGTGTAGTTCAAACTCGTCTCCATGAAGTTATTGCAGCTTTA
ATCAATCTGTTGGTGGCTCTTGAAAAACTTGGAAAATATCCTGGATCTTCAGTTCGAATC
AACAGACTGTACACTTGCTTGCATAACGAAACTAAAATATCACTGCACAGAATTGCAGAC
GCCTTTGAGGATAGTCTCAACGCAGTCAATCTGTCACAAGAACACAGAAGAAGAATGCAA
TCTTTTATGACTTACAACCAGTGA

InterProScan

Pfam	Nucleoporin_prot_Ndc1/Nup (IPR019049) - T[1-320] 5.1E-39
PANTHER	Nucleoporin_prot_Ndc1/Nup (IPR019049) - T[1-326] 1.1E-44

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
NDC1_HUMAN	27.019 %	121	1.65E-30