Aniseed - Transcript Card

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S1546.g08530.01.t

Possible name(s)

TGFB1; TGFB2; TGFB3

Gene model

Haaura.CG.MTP2014.S1546.g08530

Location

S1546 [7,999 / 9,219]

Sequences

Amino acid sequence

Length: 208

>Haaura.CG.MTP2014.S1546.g08530.01.p
MEMTVPCPAEDNFQGQRRRSSTRSFTEKMDILFAGSNRLINLASAGRGDRMGDNTEIGSM
KKDLYPHLVIMMRSEAAQQQNNIKGNGRRRKKRSLDADYCFSKNPNESNCCLRELYIDFR
KDLKWNWVHAPTGYKANFCAGACPYLWSMDTQHATILSLYKSMNPRASSSPCCVPHTLNP
LTIVYYNKGKFKVTQLSDMILLSCKCS*

Nucleotide sequence

Length: 738

>Haaura.CG.MTP2014.S1546.g08530.01.t
ATGACTCATTAAGCAGTTAAGATTAGAGACATTTCACCTTCACAACATCTTTCGTTAGAA
AGTTTTAACCTGTTCTTTAACGACACTTGTCATCACTCAGGTTCTAACCTTGGTATGGAA
ATGACGGTACCGTGTCCAGCAGAAGACAATTTTCAAGGACAAAGAAGAAGATCCTCTACG
CGCAGCTTTACTGAAAAAATGGATATACTATTCGCAGGTTCGAATAGACTTATAAACCTT
GCCAGTGCAGGACGTGGTGACAGAATGGGCGATAACACTGAAATAGGAAGCATGAAAAAA
GATTTGTATCCTCATCTGGTCATCATGATGAGGTCGGAAGCTGCCCAGCAGCAGAACAAC
ATCAAAGGCAACGGGCGCAGAAGGAAGAAGCGCTCGCTTGACGCCGATTACTGCTTTTCT
AAAAATCCGAACGAATCCAATTGTTGTTTGCGTGAACTCTATATAGATTTTCGTAAAGAT
TTGAAATGGAACTGGGTTCACGCTCCGACTGGGTACAAAGCAAATTTCTGTGCCGGTGCT
TGCCCCTACTTGTGGAGCATGGATACTCAACACGCGACCATACTCAGTCTGTATAAGAGC
ATGAACCCAAGAGCCTCATCTTCACCTTGCTGCGTGCCACATACTCTTAATCCATTAACC
ATCGTGTATTACAATAAAGGGAAATTCAAAGTTACTCAGCTATCTGACATGATTCTTCTC
TCGTGTAAATGCAGTTGA

InterProScan

PANTHER	TGF-beta-rel (IPR015615) - T[2-207] 1.7E-61
ProSiteProfiles	TGF-b_C (IPR001839) - T[90-207] 35.898
Gene3D	Cystine-knot_cytokine (IPR029034) - T[94-207] 9.3E-38
SUPERFAMILY	Cystine-knot_cytokine (IPR029034) - T[103-206] 1.24E-33
Pfam	TGF-b_C (IPR001839) - T[109-206] 7.8E-25
SMART	TGF-b_C (IPR001839) - T[110-207] 9.1E-35
ProSitePatterns	TGFb_CS (IPR017948) - T[128-143] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TGFB3_HUMAN	47.619 %	182	4.79E-56
TGFB2_HUMAN	50.267 %	179	8.16E-55
TGFB1_HUMAN	52.83 %	171	9.83E-52