- Transcript 'Haaura.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S161.g02847.01.t
Possible name(s)
LHCGR; SORL1; TSHR
Gene model
Location
S161 [77,760 / 83,269]
Amino acid sequence
Length: 989
>Haaura.CG.MTP2014.S161.g02847.01.p
MYPLKNCINMQFLLLITVLLVSNTTSRQIDRLQTANPSRANFKCSSGEVIPSAKFCDGRR
DCSDGSDEITNESSITNRTSKYQRCTNSANIVNSYCLIPLTDICNGNVECKNFSKCDADC
TNYYTCQKGELCVSRATICDGNSCSGCPEDHEWPNGVGFKCRRNGKECILPQQLVWDGVA
DCDGGLDLCVAPGQTPLKITSDFRQLNTSRIETDRCFQCLNDPTIIHKTQLCDGIIHCPD
LSDECLCENTSLQICNKVVKRAKIPLNSTCKVGDFKCNNGRCIPRTSVCNGISQCSQAED
EDISFCDGSKPCIDSTAEDTKCRCGTRKDTRNECYNVVASACNGIEECELPLGASWVEPP
GYPPDECQAKCGTSRNFSCTVDAAGRLGVPLHTIVCYKTTYTPPSTILIMSRNGTNITLT
IPGARSVMEVYVENTNFCDGYKDCPNNAQDESNCPNRFNCSAQNGVLINIDGKKVCDGFI
DCDSGEDETRELCDNSRFFCPSLGGRKVNIEKSLVCDGRIACDNLDDEQNCTNDGRFYCE
SGKPLFVIKRKVFDGRLDCSDWSDECPTNSIKNDILNSRYQMIGNTFLRVLVWIMGLSAL
FGNTAVIITVVNKQKRDHYKDVAANMLANRLYILNLAVADLLMGIYLLGLGIAGLTMKGR
YCAEDLNWRSGSTCVAFGVLSVLSSETSVATMILLTISRLYAIKNPLSSATQPRLYIVLL
GILVTWVFSIFIAFLPLSASLQHLFIYQASFSNNPFAGKLTMDLDSARTLIDKALDFDLS
SNISVTGMNQAVGDIKSASWSGLADISSKYTAHPEYYKPTAYFGYYSIDSVCIPKFFVTT
SDRAWRFSFTVTLFNFLAFVFVAASYGWIYYKSLRKKSIRQKDKSAANKRMGSIQRKILR
LIITDLCCWMPICIIAFCKISGAYVGDTAYAVSAIVLLPINSALNPILYSDIPEKIYSYC
AEKKKEKTSRSNEGGTQETNFATPKRSG*
Nucleotide sequence
Length: 2,967
>Haaura.CG.MTP2014.S161.g02847.01.t
ATGTATCCGCTCAAAAACTGCATAAATATGCAGTTCCTCTTGCTCATCACTGTTTTACTG
GTTTCAAATACAACCAGTCGGCAAATTGACAGGCTACAAACAGCAAACCCAAGCAGAGCA
AATTTCAAATGCAGCAGTGGAGAGGTGATACCATCAGCGAAATTCTGTGACGGAAGAAGG
GACTGCTCTGATGGAAGCGATGAAATAACAAACGAAAGCTCAATTACCAATCGTACATCG
AAATATCAAAGATGTACCAACTCGGCAAACATCGTCAACAGTTACTGCCTCATTCCACTA
ACTGATATTTGCAATGGCAATGTTGAATGCAAAAACTTTTCAAAGTGCGACGCAGATTGC
ACAAACTATTATACATGTCAGAAAGGCGAATTATGTGTATCGCGTGCTACAATATGCGAT
GGTAATTCGTGCAGCGGATGTCCTGAAGACCACGAATGGCCAAATGGAGTTGGTTTCAAA
TGTAGGAGAAATGGTAAAGAATGCATATTGCCACAACAGCTGGTATGGGATGGTGTTGCT
GACTGTGATGGTGGATTGGATTTATGTGTGGCACCGGGACAGACTCCGCTTAAAATAACA
AGCGATTTTCGTCAACTGAACACGTCAAGAATAGAAACAGATAGATGCTTTCAGTGTTTA
AACGATCCTACGATTATTCACAAAACGCAGCTGTGCGATGGAATTATTCACTGTCCTGAC
CTTTCAGACGAATGCCTTTGTGAAAACACGTCTTTACAAATTTGTAACAAAGTTGTAAAA
CGCGCCAAGATACCGCTAAATTCTACTTGCAAGGTCGGTGACTTTAAATGCAATAATGGA
AGGTGCATTCCTCGCACATCGGTATGCAATGGAATATCACAATGTTCACAAGCAGAAGAT
GAAGATATCTCATTCTGTGATGGTTCCAAACCATGTATAGATTCCACGGCCGAAGACACG
AAATGCAGATGCGGGACAAGAAAGGACACTCGGAATGAATGTTACAATGTAGTAGCGTCG
GCGTGTAATGGAATAGAGGAATGTGAACTTCCTTTGGGCGCATCGTGGGTAGAACCTCCA
GGATATCCGCCTGATGAATGCCAAGCTAAATGCGGAACATCTAGAAATTTCAGCTGTACG
GTGGACGCGGCTGGTCGCTTAGGCGTTCCACTTCACACCATTGTGTGCTACAAAACTACT
TACACACCACCATCTACGATTCTGATTATGAGTCGAAATGGAACAAACATTACTTTGACA
ATCCCGGGAGCTAGGTCCGTGATGGAAGTTTATGTTGAAAATACGAATTTTTGTGATGGC
TATAAGGACTGTCCTAATAACGCACAAGATGAAAGCAATTGCCCGAACAGGTTCAACTGT
TCCGCGCAGAATGGAGTGTTAATCAACATTGACGGGAAAAAAGTTTGCGACGGTTTTATC
GACTGCGATTCCGGGGAAGACGAAACAAGGGAATTGTGTGACAATAGTCGCTTCTTCTGT
CCATCTTTGGGGGGTAGAAAGGTAAACATCGAGAAAAGCCTTGTATGTGATGGAAGAATA
GCATGCGACAATCTAGACGACGAACAAAATTGCACTAACGATGGAAGATTTTACTGCGAA
AGTGGGAAGCCACTCTTTGTTATCAAGAGAAAAGTGTTTGATGGGCGATTAGATTGTTCA
GATTGGAGTGATGAATGTCCGACCAATTCGATAAAAAATGATATATTGAATTCAAGATAT
CAAATGATTGGAAATACATTCCTTCGAGTGTTGGTTTGGATCATGGGACTTTCGGCGTTG
TTTGGAAATACTGCTGTCATCATAACTGTTGTCAACAAACAAAAAAGAGACCATTACAAA
GATGTCGCTGCGAATATGTTAGCAAATCGCCTCTACATCTTGAATCTTGCAGTTGCTGAT
TTATTGATGGGAATATACCTTCTTGGTCTTGGCATTGCTGGATTGACAATGAAGGGTCGA
TACTGTGCTGAAGATCTAAACTGGAGATCAGGATCGACATGCGTTGCTTTCGGAGTTTTA
TCTGTTTTATCAAGTGAAACCTCCGTAGCTACGATGATTCTGCTTACAATATCTCGACTC
TATGCCATTAAAAATCCTCTTTCTTCAGCAACTCAACCCAGGCTCTACATAGTTCTGTTG
GGTATATTGGTGACTTGGGTTTTCTCGATTTTCATCGCGTTTTTACCACTTTCTGCCAGT
CTTCAGCATCTCTTTATTTATCAAGCGTCTTTCAGCAACAACCCGTTCGCAGGAAAATTG
ACAATGGACTTGGACAGCGCAAGGACACTAATAGACAAGGCACTCGATTTTGACCTTTCA
TCGAACATATCCGTAACAGGCATGAATCAAGCCGTAGGTGATATAAAGTCAGCATCCTGG
AGTGGACTTGCAGACATATCTTCTAAATACACTGCACATCCAGAGTATTATAAACCCACT
GCTTATTTCGGATATTACAGCATTGACAGTGTGTGTATTCCGAAATTTTTCGTCACAACC
TCAGATCGTGCATGGAGATTCTCATTCACTGTCACTCTTTTCAATTTTCTTGCTTTTGTA
TTCGTGGCTGCATCATATGGATGGATCTATTACAAGTCTTTAAGAAAGAAATCTATCCGA
CAAAAGGATAAGTCTGCGGCGAACAAACGAATGGGATCTATTCAACGAAAGATTCTTCGT
CTTATAATCACTGATCTCTGTTGCTGGATGCCGATATGCATTATTGCTTTTTGTAAAATC
TCCGGAGCCTATGTTGGAGACACTGCTTACGCAGTATCAGCAATTGTTCTTCTTCCGATC
AACAGCGCTCTTAATCCGATTCTATACTCAGACATTCCCGAGAAGATTTACAGCTACTGT
GCCGAGAAAAAAAAAGAGAAGACATCACGCAGCAATGAAGGAGGCACACAAGAAACCAAC
TTTGCGACACCCAAACGATCTGGATAA
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[37-73] 3.5E-6 - T[154-191] 0.6 - T[212-249] 0.057 - T[269-308] 2.8E-7 - T[453-495] 0.011 - T[530-568] 0.085 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[39-69] 1.83E-8 - T[268-301] 7.46E-8 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[39-68] 7.6E-9 - T[268-301] 1.8E-7 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[42-86] 9.363 - T[269-307] 11.425 - T[453-494] 9.012 - T[492-532] 8.725 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[42-68] 4.81471E-7 - T[217-247] 0.00924256 - T[270-302] 3.35852E-6 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[47-68] 1.7E-18 - T[280-301] 1.7E-18 - T[467-488] 1.7E-18 - T[507-528] 1.7E-18 - T[544-565] 1.7E-18 |
| PANTHER |
TSHR/LHCGR/FSHR (IPR034298) - T[56-259] 1.1E-97 - T[230-969] 1.1E-97 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[282-306] . |
| ProSiteProfiles |
GPCR_Rhodpsn_7TM (IPR017452) - T[602-949] 23.08 |
| Pfam |
GPCR_Rhodpsn (IPR000276) - T[602-738] 2.4E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SORL_HUMAN | 26.157 % | 94.7 | 1.5E-19 |
| TSHR_HUMAN | 32.105 % | 88.6 | 8.02E-18 |
| LSHR_HUMAN | 31.707 % | 93.6 | 1.92E-19 |