- Region 'REG00000819' >
- Transcript 'Cisavi.CG.ENS81.R828...' >
- Transcript 'Cisavi.CG.ENS81.R239...' >
- Transcript 'Cisavi.CG.ENS81.R828...' >
- Transcript 'Haaura.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S1632.g08664.01.t
Possible name(s)
LHX3; LHX4; LHX5
Gene model
Location
S1632 [2,809 / 6,119]
Amino acid sequence
Length: 622
>Haaura.CG.MTP2014.S1632.g08664.01.p
MKNIDMVGGNHICSDGVFTTPCSKLSDLLENNSWEQQKSGKSWRHHPYGTPLGASHNLKK
RLEKRRLDSGYSSCSPAASLFDSMCSVVQPPTKCIRFATSPVPINFTLEEEKESPIQKSS
DIIFKSLQSYSPVSDASEDSPNLIPSLESQNLLPPARDVPEIFDIIWSENPTRGNETVNA
KSNEIEDYSDIMKVLTEIPKCTGCEHRIFDRFILKVQDKPWHSQCLKCNDCSAQLSEKCF
SRGNMVFCKDDFFKRFGTKCTACGHGIPPTEVIRRAQDNVYHLECFRCFLCHEKMGTGDQ
FYLLEDNRLVCKKDYEQAKSRDADIENGVKRPRTTITAKQLETLKSAYNQSPKPARHVRE
QLSSETGLDMRVVQVWFQNRRAKEKRIKRDTGRQRWGHFFSRNQLPSGPTSPIGDAPVTA
GQKKRSKCGNRLNHCKDNQQNSQSHSSPLDGSSVFPIGSLGTGMQGEIAASFQSGCAVGI
EGPSVLPPVMDHKTLPPYSETPMSFSESNPSHFVHGQNPSDVTYMNTLPVGGSHVPLTAV
PQHNIPAFSLPFHMEGNMVPDPSTQFMMATGHLGPQDTDLVSNSSGRSNFSDLSASPGSC
RDEFSAIEQRVDGNLAGRNMI*
Nucleotide sequence
Length: 1,971
>Haaura.CG.MTP2014.S1632.g08664.01.t
ATGAAGAATATAGACATGGTCGGAGGAAATCATATCTGCTCAGACGGAGTATTTACAACA
CCTTGTTCGAAGCTTTCCGATTTGTTGGAAAACAACAGTTGGGAACAACAGAAATCGGGA
AAGTCGTGGCGTCATCATCCTTATGGAACCCCGTTAGGAGCTTCCCACAATCTTAAAAAA
CGCCTGGAGAAACGAAGACTGGATTCAGGATACTCATCTTGCTCTCCTGCTGCATCTCTA
TTCGATTCGATGTGTTCCGTCGTCCAACCTCCGACGAAATGCATTCGATTTGCGACATCG
CCTGTGCCGATCAATTTTACCTTGGAGGAAGAAAAGGAATCTCCTATTCAGAAGAGCTCG
GACATTATTTTCAAATCTCTCCAATCTTATTCCCCGGTCTCAGACGCTTCAGAAGACTCA
CCGAATCTTATTCCAAGCTTAGAGAGTCAAAATCTCTTGCCGCCTGCCAGAGACGTTCCT
GAAATATTCGATATAATTTGGAGCGAGAATCCCACGCGAGGAAACGAAACGGTTAACGCG
AAATCGAACGAAATAGAAGATTATAGCGATATTATGAAAGTATTGACTGAAATCCCGAAA
TGCACTGGATGTGAGCATCGTATTTTCGATCGGTTTATACTGAAAGTACAAGACAAACCG
TGGCATTCGCAGTGTCTGAAATGCAACGACTGTAGTGCTCAGCTATCGGAAAAATGTTTC
TCGCGCGGAAATATGGTCTTTTGCAAAGACGATTTTTTCAAGCGTTTCGGAACAAAATGC
ACCGCATGTGGTCACGGTATTCCACCCACCGAAGTCATAAGACGCGCCCAGGACAACGTT
TACCACCTGGAATGTTTCCGTTGCTTTCTCTGCCACGAAAAAATGGGAACGGGAGACCAA
TTCTATTTGCTGGAGGACAACAGGCTGGTTTGCAAGAAGGATTATGAACAAGCTAAATCT
CGAGATGCGGATATTGAAAATGGTGTGAAACGACCACGAACGACAATTACGGCCAAGCAA
CTGGAAACACTAAAATCAGCGTACAATCAAAGTCCCAAACCGGCACGGCACGTTCGGGAA
CAGCTAAGTTCCGAAACCGGCCTCGACATGAGAGTTGTACAGGTTTGGTTCCAAAATAGA
AGAGCAAAAGAAAAGAGAATCAAGAGGGATACCGGCCGACAACGGTGGGGTCACTTTTTC
TCACGAAACCAGCTACCTTCCGGACCCACATCACCCATCGGCGATGCACCTGTTACGGCA
GGCCAGAAAAAGCGTTCGAAATGTGGGAACAGACTAAACCATTGCAAGGATAATCAGCAA
AACAGCCAAAGTCACTCTTCTCCTTTAGATGGATCGTCTGTCTTTCCGATTGGTTCACTA
GGTACTGGAATGCAAGGAGAAATCGCCGCATCGTTTCAAAGTGGTTGCGCTGTCGGTATA
GAAGGTCCGAGTGTCCTGCCGCCAGTAATGGACCACAAGACTCTTCCACCTTACTCCGAA
ACCCCCATGTCGTTTTCTGAATCCAACCCCAGCCATTTTGTACACGGGCAAAACCCATCA
GACGTTACCTATATGAATACGTTACCAGTTGGAGGTTCCCACGTTCCGTTGACAGCAGTA
CCCCAACATAACATTCCTGCTTTCTCTCTACCATTTCACATGGAAGGCAATATGGTTCCG
GACCCTTCTACGCAATTTATGATGGCGACCGGCCACCTTGGTCCACAAGACACCGATTTA
GTTTCCAACAGCAGTGGAAGATCTAACTTCAGTGATTTATCAGCCAGTCCCGGTTCTTGC
CGAGACGAATTCTCAGCCATCGAGCAGCGCGTGGATGGCAATCTCGCCGGTCGAAACATG
ATCTGACTCGTTTCGTCCAGAAAAATATTTTTGTGTTCCGAAATTCAATGTTTTCCCGAT
TTACTTGTGCAGCATGCTTTCCAGGACATCTCTTGGCGCTTTACTTAAAAT
| ProSiteProfiles |
Znf_LIM (IPR001781) - T[199-258] 13.9 - T[259-321] 11.563 |
| SMART |
Znf_LIM (IPR001781) - T[200-251] 4.6E-13 - T[259-314] 7.8E-15 |
| Pfam |
Znf_LIM (IPR001781) - T[201-256] 7.0E-12 - T[260-318] 2.8E-16 |
| ProSitePatterns |
Znf_LIM (IPR001781) - T[260-295] . |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[325-389] 7.27E-20 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[327-387] 18.026 |
| SMART |
Homeobox_dom (IPR001356) - T[329-391] 5.6E-22 |
| Pfam |
Homeobox_dom (IPR001356) - T[330-386] 1.4E-20 |
| CDD |
Homeobox_dom (IPR001356) - T[330-388] 5.58817E-21 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[362-385] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LHX4_HUMAN | 70.874 % | 332 | 1.18E-108 |
| LHX3_HUMAN | 74.02 % | 335 | 1.02E-109 |
| LHX5_HUMAN | 42.8 % | 233 | 1.06E-70 |