- Transcript 'Cisavi.CG.ENS81.R48....' >
- Transcript 'Haaura.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S1678.g08735.01.t
Possible name(s)
PCDH17; PCDH18; PCDHB3
Gene model
Location
S1678 [14,989 / 19,670]
Amino acid sequence
Length: 893
>Haaura.CG.MTP2014.S1678.g08735.01.p
FPDSEMSAPALWKEVVTLNNVTGEVQLLQNLDREQHDGLRIPIAARDGDLVHPRTGNTWL
TIHVRDVNDNVPIINVNFIVDAEGDKAYILETSPVRTYLAYVITTDADKGNNGQVKTTIQ
TMKAPGSIRTGSYNASGQFVLASEGLIGTGLPLDRESCNEYKIVITACDYGLPKKCSKKI
ITVVVLDANEHAPTFEATTQMVTLREDSDVGTFVTSVRAHDDDALNGPALIRTESGELLP
SHYGDVTYSIVDNVNDVFSIDSNTGRISLVRKLDREDTEEWKLTVKAVDGGSPEPLSSSC
FVIIQVDDVNDNAPLFVNPSVNNSHVYASITNHDVIIANIKAIDKDEKENGDIRYYLVER
SGQNWGNTYKPAAFTIDSKTGDFAFSTEVNLTDLIGEHTVAIEARDSGDPAMRSLVTIRV
FVSDVPLKPMTPITNGIDLVTAKSSDFLILALSLGSAIVFLLLVVIIVVLRCKRENKRAR
TYRCREAENKTTSCVACSCEGSHDDVRSNLTSPSSASSHPETTTTIADSSKVGKTWNPPN
SRTESDSVLSGSGGSSSSNGSHLTTSDASARDRTRYQSSPNPPCVLPLGTKLCSPISKLG
AASLSSHPDSDSGRGESETDAVSYDMHDAIESGVRAMKRSPLTMGSDEVFQREYEQRSLP
YGLGPRCTRQCLKDGHSDICWMPSPEKKTAVKRNLSSLAGRTLPSTLGYSCQANQYQPKP
CSRLESIRETLPSQERLSTRQFHRRNPYTKPSSCSDIPYDDERRENLSTRTRGAISSVCH
HHHSSSDVYEPNCVGSSRSPSSERLSQVSSSCSAPERSLTAQEKPYNLNMNRLTSNYQDY
LKVPQSNYYSRISPTSENSDQYDDSTAPTCTDSLMTANEAQEIINDINRLLV*
Nucleotide sequence
Length: 2,679
>Haaura.CG.MTP2014.S1678.g08735.01.t
TTCCCAGACAGCGAAATGTCCGCACCTGCCCTGTGGAAGGAAGTCGTCACTTTGAACAAC
GTAACGGGGGAAGTGCAACTCCTTCAGAATTTGGATAGAGAACAGCACGATGGGCTCCGA
ATACCTATTGCAGCCCGGGACGGCGACCTTGTGCACCCAAGAACCGGTAATACATGGCTG
ACTATCCACGTCAGAGATGTAAACGACAACGTGCCCATCATAAACGTAAATTTCATTGTA
GATGCTGAAGGAGATAAAGCTTACATTCTTGAAACATCGCCTGTTCGCACCTACCTCGCC
TATGTGATAACCACAGACGCTGACAAGGGTAACAATGGTCAAGTCAAAACCACAATCCAA
ACCATGAAGGCACCTGGATCAATTAGAACCGGATCTTACAATGCCAGTGGTCAGTTCGTT
TTGGCCAGCGAAGGATTAATTGGCACCGGTCTGCCCTTGGATCGCGAATCGTGCAACGAA
TACAAGATTGTTATCACAGCGTGTGACTATGGCTTGCCAAAAAAATGCTCGAAAAAAATC
ATCACAGTAGTTGTCCTTGATGCTAACGAACATGCACCAACATTCGAAGCGACAACCCAA
ATGGTAACATTGCGGGAAGACAGTGACGTAGGTACTTTTGTGACGTCAGTGAGAGCGCAT
GACGATGATGCGTTGAATGGACCAGCCCTGATCCGAACAGAAAGCGGAGAACTGCTACCA
TCACACTATGGTGACGTCACCTATTCCATAGTTGACAATGTAAATGACGTGTTTTCTATC
GATTCCAACACTGGAAGAATATCACTTGTACGTAAACTTGACCGAGAAGATACCGAGGAA
TGGAAGCTTACAGTAAAAGCTGTTGATGGTGGCTCACCGGAACCTTTGAGCAGTAGTTGC
TTCGTTATAATCCAAGTCGATGATGTTAACGACAATGCTCCACTGTTCGTTAATCCGTCC
GTTAATAACTCTCACGTGTACGCAAGTATCACAAACCATGACGTGATCATCGCGAATATC
AAGGCGATTGACAAGGATGAAAAAGAGAACGGCGATATCCGGTATTATCTGGTCGAGAGA
AGTGGACAAAATTGGGGCAACACCTATAAGCCTGCTGCATTCACTATTGATTCGAAAACC
GGAGATTTTGCCTTCTCAACAGAAGTTAATCTAACTGATCTCATTGGAGAGCATACAGTG
GCTATTGAGGCTCGTGATTCAGGCGACCCAGCTATGCGAAGTTTGGTCACAATTCGTGTC
TTCGTAAGCGACGTGCCACTCAAACCAATGACGCCAATCACCAACGGCATTGACTTAGTC
ACAGCGAAATCATCCGATTTTCTAATCCTTGCCTTATCACTAGGATCTGCAATCGTCTTT
TTACTTCTCGTTGTCATTATTGTTGTGCTTAGATGCAAACGAGAAAATAAGAGAGCTAGA
ACTTATAGATGTCGAGAAGCAGAGAACAAGACTACCAGTTGTGTTGCCTGCAGTTGTGAA
GGATCTCATGATGACGTCAGAAGTAACCTGACTTCTCCATCTTCAGCATCTTCTCATCCC
GAGACGACAACGACCATAGCTGATTCGTCCAAGGTTGGAAAAACTTGGAACCCACCAAAT
AGCAGAACTGAGAGCGACTCTGTTCTCTCTGGATCTGGTGGCTCGTCATCAAGCAACGGA
AGCCATTTGACGACAAGTGACGCAAGTGCACGCGATAGGACAAGATACCAAAGTTCCCCT
AATCCGCCATGCGTTCTCCCTCTTGGCACAAAATTGTGTTCGCCCATTTCCAAGCTTGGA
GCTGCTTCTTTGTCATCTCACCCAGACAGCGACAGTGGCAGAGGCGAAAGCGAGACGGAT
GCAGTTAGTTACGATATGCACGATGCAATTGAATCAGGAGTTAGAGCAATGAAACGTTCT
CCACTCACGATGGGATCTGATGAAGTGTTTCAACGTGAATATGAACAAAGATCTTTGCCT
TACGGCCTTGGACCACGATGCACAAGACAATGTCTGAAAGATGGCCACAGTGATATATGT
TGGATGCCATCCCCAGAAAAAAAAACAGCGGTAAAAAGAAATTTGAGTTCTCTTGCCGGG
AGAACCCTTCCATCAACACTTGGATACTCATGTCAGGCAAACCAATATCAACCAAAACCA
TGCAGTAGGTTGGAATCAATTCGTGAAACATTACCATCGCAGGAACGTCTATCTACCAGA
CAGTTTCATCGTCGTAATCCTTACACAAAGCCCAGTTCCTGTTCTGATATACCATACGAT
GACGAGCGTCGCGAGAATTTATCTACTCGCACAAGAGGCGCTATTTCATCAGTGTGTCAT
CATCATCACTCGTCGAGTGACGTCTACGAACCTAACTGTGTGGGTAGCTCCCGTTCGCCA
TCTAGTGAACGATTATCACAAGTTTCGTCGTCGTGTTCCGCTCCAGAGCGTTCCCTTACC
GCCCAGGAAAAGCCTTACAATTTGAACATGAATCGATTGACAAGTAATTATCAGGATTAT
CTCAAAGTGCCGCAGTCGAATTATTACTCCAGGATATCACCAACCTCGGAGAATTCTGAT
CAGTACGACGATAGCACGGCTCCCACTTGTACGGACTCACTAATGACCGCTAACGAGGCC
CAAGAAATAATTAATGACATAAATCGATTGCTTGTTTGA
| SMART |
Cadherin (IPR002126) - T[2-72] 9.0E-4 - T[102-193] 5.3E-13 - T[232-314] 1.3E-23 - T[340-430] 3.1E-9 |
| PRINTS |
Cadherin (IPR002126) - T[14-33] 2.6E-21 - T[80-109] 2.6E-21 - T[160-172] 2.6E-21 - T[174-193] 2.6E-21 - T[193-206] 2.6E-21 - T[263-289] 2.6E-21 - T[298-315] 2.6E-21 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[14-74] 2.49E-8 - T[67-187] 1.44E-12 - T[183-321] 9.67E-25 - T[304-426] 2.09E-13 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[62-72] . - T[304-314] . |
| Pfam |
Cadherin (IPR002126) - T[88-186] 5.4E-8 - T[202-306] 3.1E-13 - T[334-422] 6.3E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCD18_HUMAN | 24.242 % | 173 | 3.02E-44 |
| PCD17_HUMAN | 26.025 % | 171 | 1.26E-43 |
| PCDB3_HUMAN | 27.309 % | 149 | 3.83E-37 |