- Transcript 'Haaura.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S185.g03068.01.t
Possible name(s)
GAPVD1; RABGEF1; RIN3
Gene model
Location
S185 [1,648 / 4,464]
Amino acid sequence
Length: 581
>Haaura.CG.MTP2014.S185.g03068.01.p
MSAVKSQGSRKGIHVDESELLCKKGCGFYGNPTWQGYCSKCWREEYQNQRQVQIETDHEF
AKHLQEQENKARSTPPAKPVTKSAPATPQNSETPSRLASFSKFEDKKIQASRIKTNTFKK
LFTTSNDDNSPSKPTTSIPRLSPSSILGKSPKIRGKQPPPKIAQRSGTSWLSSGPERQQS
YESKQASNDFMEFIKAFNEPAAKDVMKQCRSFMERLVANRDMSIEEQSELVQDFYQAMAT
RIVTHPVFRNYSSEKDQDRIMDNVEKFLMTRLYRSIFCSDQTDDERQDLALQKKIRNLHW
ITTTMLDAQMDETLPEVNAEVDKAITAIIEMDSKRAPQDKLSCITRCSKHIFQSLKVSKD
EGEPSSADEYLPALIYIVLRANPPLLKSNISYVTRFSNPSRLMAGEDAYFFTNLCCAVAF
IESGLNASSLSLSEDEYDGYMRGDFRKLKVKDRLSSNSDLCPGLELMYQNLNELASMHQR
VDGLFAQAIEIQRDMELHSAFISDSVNREHEKSAPYIEEFCTKQEKITPSLLTSCVTGAT
VSDAFPEYLEPSPVSALDMDLPSTSELPPPLEPTVVTDAT*
Nucleotide sequence
Length: 1,743
>Haaura.CG.MTP2014.S185.g03068.01.t
ATGAGTGCTGTGAAATCGCAAGGCAGCCGCAAAGGAATACACGTAGACGAGTCCGAGCTT
CTGTGCAAGAAGGGTTGTGGATTTTATGGAAATCCTACATGGCAAGGTTATTGCTCCAAG
TGCTGGAGGGAAGAGTACCAGAATCAAAGACAAGTACAGATAGAAACAGACCATGAGTTC
GCGAAGCATCTCCAGGAGCAAGAAAACAAAGCCAGAAGTACCCCCCCTGCAAAACCAGTG
ACTAAATCGGCTCCGGCGACACCACAAAACAGTGAAACTCCTAGTAGATTGGCAAGCTTT
TCAAAATTCGAGGACAAAAAAATTCAAGCGAGTCGCATTAAAACAAACACTTTTAAAAAG
CTCTTCACTACGAGCAATGATGACAACTCGCCTTCAAAACCAACCACTTCCATTCCCAGA
TTGTCACCATCGTCGATTTTAGGAAAGTCACCGAAAATCCGAGGTAAACAACCTCCTCCT
AAAATAGCACAGCGCAGCGGCACATCATGGCTCTCTTCTGGACCAGAGCGTCAGCAGAGT
TATGAGAGTAAGCAAGCGTCTAATGACTTCATGGAATTCATCAAGGCCTTCAATGAACCG
GCGGCCAAAGATGTTATGAAGCAGTGCAGGTCTTTTATGGAAAGGCTTGTGGCCAACAGG
GACATGAGTATAGAGGAGCAATCTGAACTTGTACAAGACTTTTACCAAGCTATGGCTACG
AGAATAGTTACCCATCCTGTCTTTCGGAATTACTCATCAGAAAAAGACCAGGACCGTATT
ATGGACAACGTAGAAAAATTTCTTATGACCCGATTGTATAGAAGCATATTCTGTAGTGAC
CAAACTGACGATGAACGACAGGATTTGGCATTGCAGAAAAAGATTCGCAATCTCCACTGG
ATCACTACTACAATGCTTGATGCCCAAATGGATGAAACCTTGCCTGAAGTCAATGCTGAA
GTTGATAAGGCAATAACAGCTATTATCGAAATGGATTCAAAACGGGCACCACAAGACAAG
CTTTCTTGCATAACACGGTGTAGCAAACACATATTTCAATCTCTGAAAGTATCCAAGGAT
GAGGGTGAACCGTCCAGTGCTGATGAATACTTGCCCGCTCTGATATACATCGTATTAAGA
GCTAATCCGCCCTTACTGAAATCCAATATCAGTTATGTTACGAGATTCTCCAATCCCAGT
AGATTGATGGCGGGTGAAGATGCTTATTTCTTCACTAATCTGTGCTGTGCTGTTGCTTTC
ATTGAAAGCGGATTGAATGCTTCTAGTCTTTCGCTATCTGAGGATGAATACGACGGTTAC
ATGCGAGGAGATTTTCGGAAACTCAAAGTAAAAGACAGACTGTCTAGCAACTCGGACCTA
TGTCCTGGTTTGGAGCTGATGTATCAGAACCTTAACGAACTTGCTTCAATGCACCAACGA
GTCGATGGTCTTTTCGCTCAAGCGATTGAAATACAGCGTGATATGGAACTACATTCTGCT
TTTATAAGCGACTCTGTGAATCGGGAACATGAGAAATCAGCACCTTACATAGAAGAGTTT
TGCACTAAACAAGAGAAGATAACCCCGTCTTTGCTGACTTCGTGTGTAACAGGAGCAACT
GTCAGTGATGCATTCCCAGAATATCTTGAACCATCTCCTGTTTCTGCTCTGGACATGGAC
CTGCCATCTACTAGCGAACTTCCCCCACCGTTGGAGCCAACTGTCGTCACAGATGCTACC
TAG
| ProSiteProfiles |
Znf_A20 (IPR002653) - T[16-50] 10.291 |
| SMART |
Znf_A20 (IPR002653) - T[19-43] 2.2E-10 |
| Pfam |
Znf_A20 (IPR002653) - T[20-43] 1.7E-12 |
| SUPERFAMILY |
VPS9_dom_sf (IPR037191) - T[185-441] 1.7E-69 |
| Gene3D |
VPS9_dom_sf (IPR037191) - T[281-451] 3.3E-60 |
| ProSiteProfiles |
VPS9 (IPR003123) - T[285-430] 36.531 |
| SMART |
VPS9 (IPR003123) - T[319-439] 4.5E-18 |
| Pfam |
VPS9 (IPR003123) - T[322-423] 8.0E-25 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| GAPD1_HUMAN | 26.364 % | 91.7 | 3.88E-19 |
| RABX5_HUMAN | 37.937 % | 404 | 7.21E-133 |