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  1. Transcript 'KH2012:KH.L4.55.v1.A...'
  2. Transcript 'Phmamm.CG.MTP2014.S3...'
  3. Transcript 'Haaura.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S1.g00018.01.t

Possible name(s)

DDX42; DDX46; DDX5

Location

S1 [128,145 / 135,070]

Sequences

Amino acid sequence

Length: 1,143

>Haaura.CG.MTP2014.S1.g00018.01.p
MEVDTTISATVNIKQEPVEKDPKNQGTTEENKKSRSRSRSKQKSNIRNRNYRSHHEKKRS
RSRSPGLKKKYSRSYSRHSKGSSKRSRSKRSRSRSRSRDKSRRGRDKKSHTEGQKRKQRS
SSTGSSGGSEERTKNNTNKEANEDNKSKSKSTSETKDKSEKRSRRSRSRSRGRKRSHERR
SSRNERSRKKGRYGKHDKEESRDKDRDVVKDPEKKENNKAKDTLSKDFEQARLEEEMKKR
KDRVETWRKEQKLALGQPSQDDDDDAPGGKQWTLDDDDDDDEEDGEMEEEKEETVKDENG
VEEEKENEKIDSPKKMEEAEEDEDEDDPLDAFMSNLKAENDKHMFGNTTENTSGPKISRV
VAVAKKKSAHVKPGKKKGELMEDDADAMEYSSEEEEESLDSALGKFRNKQQGQGRKLDTV
IDHSKIQYEDYRKKFYVEVPELAAMKEEEVDEMRMNLEHTKVRGKNCPKPIKTWAQAGVS
FKVLNALKKLNFEKPTSIQAQALPVIMCGHDMMGIAKTGSGKTLAFVLPMLRHIMDQRPL
EDKEGPIAVIMTPTRELALQITKECKKFTKPMKLKVVCVYGGTGISEQIAELKRGAEIIV
CTPGRMIDMLAANSGRVTNMRRCTYLVLDEADRMFDMGFEPQVMHIMNAVRPDRQTVMFS
ATFPRQMEALARRILNKPIEVQVGGRSVVCSDVTQHVHILEKDQKYFKLLELLGLYQEQG
SILVFVDKQEHADHLLKDLMGSSYPCMALHGGIDQYDRDSVINDFKNGITGLLIATSVAA
RGLDVKNLILVINYDCPNHYEDYVHRCGRTGRAGSKGFAYTFIVKEQARHAGDIIKALEL
SGASVSKELETLWATYKSDLTAQGKAVSKNSGFTGRGFKFDETEDELVRERKQFQKAALG
LHDSDDESPAKDIDEQIENMFNSKKRVKDVVGPLVLPGAGGESAQGQGGLSGSNIEKLEI
AKRLAVRINVKKNLGAEAQDVTQQAATAILKGGAFQAPKVSAKTIAGQLAEKINQKLNYV
PQEKSENDDEENPDGQGATFKRYEEELEINDFPQTCRWKVTSKDTLSQISEYSEAGITIR
GQYFPSGKQPEEDERKLYLAIEAVSEMAVQKAKNEITRLIKEELIRLQNSYQPINKGRYK
VT*

Nucleotide sequence

Length: 3,429

>Haaura.CG.MTP2014.S1.g00018.01.t
ATGGAGGTAGACACAACTATCAGTGCAACTGTGAATATAAAACAGGAGCCTGTTGAAAAA
GATCCTAAAAATCAAGGGACAACAGAAGAGAACAAGAAATCAAGATCTCGGTCCAGATCA
AAACAAAAATCCAACATAAGAAATAGAAATTATCGCTCTCACCATGAGAAGAAGCGTTCA
AGATCCAGATCCCCGGGCTTGAAAAAAAAATACTCCCGATCTTATTCTCGGCATTCGAAA
GGCTCTTCTAAAAGATCAAGATCTAAACGCTCTCGTTCAAGGTCGAGGTCACGAGATAAA
AGTCGAAGAGGCCGTGATAAAAAATCTCACACGGAAGGTCAAAAACGAAAACAGAGAAGC
TCAAGTACAGGTAGTTCTGGTGGCTCAGAAGAGAGGACGAAGAATAATACTAATAAAGAA
GCAAATGAAGATAATAAAAGTAAATCCAAGTCTACATCTGAAACTAAAGATAAATCTGAA
AAGAGAAGCAGAAGATCAAGGTCTAGATCAAGAGGAAGAAAAAGGTCTCATGAACGACGT
AGTTCAAGAAATGAAAGGTCAAGGAAAAAGGGTAGATATGGAAAACACGACAAGGAAGAA
TCCCGTGACAAAGATAGGGATGTAGTTAAAGATCCTGAGAAAAAGGAGAATAACAAGGCG
AAAGACACATTATCAAAGGATTTTGAACAAGCCCGGTTAGAAGAGGAGATGAAAAAGCGA
AAGGACAGAGTAGAAACCTGGAGGAAAGAGCAGAAGCTCGCTCTCGGGCAGCCGTCTCAA
GACGATGACGATGATGCACCAGGAGGGAAACAGTGGACTTTGGATGATGATGACGATGAT
GATGAGGAGGATGGGGAGATGGAAGAGGAGAAGGAAGAAACCGTGAAAGATGAGAATGGT
GTAGAGGAGGAAAAGGAAAATGAAAAGATAGATTCTCCGAAAAAGATGGAAGAGGCTGAA
GAAGATGAAGATGAAGATGATCCTCTGGATGCATTCATGAGTAATTTGAAGGCTGAGAAT
GACAAACACATGTTTGGGAACACAACAGAAAATACAAGTGGTCCTAAAATCAGCCGGGTG
GTAGCAGTAGCGAAGAAGAAATCGGCGCATGTCAAACCAGGAAAGAAGAAGGGAGAATTA
ATGGAGGATGACGCTGATGCTATGGAATACTCATCAGAGGAAGAGGAAGAATCACTCGAC
AGTGCCTTGGGTAAATTCCGAAACAAGCAGCAAGGTCAAGGCCGTAAGCTCGACACAGTC
ATCGATCATTCAAAAATCCAATATGAAGATTATCGCAAGAAGTTCTATGTTGAGGTTCCT
GAGCTGGCTGCCATGAAGGAAGAAGAAGTTGATGAGATGAGAATGAATTTGGAACATACC
AAAGTTCGTGGGAAGAACTGCCCCAAGCCGATCAAAACTTGGGCACAGGCTGGGGTCTCT
TTTAAAGTACTGAATGCTCTGAAAAAATTGAATTTTGAAAAGCCCACCTCAATACAGGCG
CAAGCTCTTCCCGTTATAATGTGCGGCCATGACATGATGGGTATAGCAAAAACTGGAAGT
GGCAAAACGTTGGCCTTTGTCTTGCCAATGCTCCGACATATAATGGACCAGAGACCTCTG
GAAGATAAGGAGGGTCCAATTGCTGTCATCATGACACCTACAAGAGAACTAGCTCTCCAG
ATCACTAAAGAATGCAAAAAGTTCACCAAACCTATGAAACTGAAAGTTGTTTGTGTGTAT
GGCGGGACAGGGATTTCCGAGCAAATCGCGGAGCTGAAACGTGGTGCCGAAATAATCGTG
TGCACTCCGGGAAGAATGATTGACATGCTCGCAGCGAACAGCGGCAGAGTTACAAACATG
AGAAGGTGTACTTATCTGGTTTTGGACGAAGCGGATCGTATGTTTGATATGGGTTTTGAG
CCACAAGTAATGCACATAATGAATGCCGTCAGACCCGACCGACAGACGGTGATGTTTTCT
GCCACATTTCCCCGTCAAATGGAAGCACTAGCAAGAAGGATACTTAACAAGCCGATCGAG
GTCCAAGTAGGTGGTCGGAGTGTGGTTTGTTCTGATGTCACCCAACATGTCCATATACTT
GAGAAAGACCAAAAATACTTCAAACTGTTAGAGTTGCTCGGACTCTATCAAGAGCAAGGA
TCGATTTTGGTTTTCGTAGATAAACAAGAACATGCTGATCACCTTCTAAAAGATCTAATG
GGCAGTAGCTATCCTTGTATGGCTTTGCATGGAGGTATCGACCAGTATGATAGAGATTCT
GTTATTAACGATTTCAAAAATGGCATCACGGGGCTCCTTATCGCCACCTCGGTTGCTGCT
AGAGGACTGGACGTAAAAAATCTTATCCTGGTTATAAACTATGACTGTCCCAACCACTAT
GAAGACTATGTTCACAGGTGCGGACGTACTGGGCGGGCCGGATCCAAGGGTTTTGCTTAT
ACCTTCATTGTTAAAGAACAAGCGAGACATGCGGGTGATATTATAAAAGCATTGGAGTTG
AGTGGTGCCAGTGTTTCAAAGGAGCTAGAGACCTTATGGGCCACCTACAAGTCAGATCTT
ACAGCTCAAGGAAAGGCCGTCTCCAAAAACAGCGGTTTCACCGGACGTGGATTTAAATTC
GACGAAACCGAAGACGAACTCGTCAGAGAAAGGAAACAGTTCCAGAAAGCAGCTTTAGGG
CTGCATGATTCAGATGATGAATCCCCTGCAAAAGATATCGATGAACAAATCGAGAATATG
TTCAACAGCAAAAAGAGGGTAAAAGATGTTGTTGGTCCCTTGGTATTACCTGGGGCAGGG
GGAGAAAGTGCCCAAGGACAGGGTGGACTTTCTGGCTCAAACATTGAGAAATTGGAAATT
GCAAAGAGGTTGGCAGTTCGTATCAATGTTAAGAAGAATTTGGGAGCTGAAGCTCAGGAC
GTCACCCAACAAGCAGCAACTGCCATCCTTAAAGGAGGAGCGTTTCAAGCTCCGAAAGTC
TCTGCAAAGACCATCGCTGGACAGTTGGCGGAAAAAATTAATCAGAAATTGAACTACGTT
CCCCAGGAGAAAAGTGAAAACGATGATGAAGAGAATCCTGACGGACAAGGCGCAACATTC
AAACGTTACGAAGAGGAACTAGAAATTAATGATTTTCCACAGACATGTAGATGGAAAGTC
ACCTCGAAAGATACACTCAGTCAAATTAGTGAATATAGCGAAGCTGGTATTACTATTCGT
GGGCAGTATTTTCCGTCTGGAAAGCAACCCGAAGAGGATGAGAGAAAACTCTATCTCGCT
ATTGAAGCTGTTTCTGAAATGGCTGTACAGAAAGCTAAGAACGAAATCACCAGACTCATT
AAGGAGGAACTAATAAGACTGCAAAACTCCTACCAGCCTATAAATAAAGGCCGTTACAAA
GTCACGTAA

InterProScan

SUPERFAMILY
P-loop_NTPase (IPR027417) - T[461-683] 1.71E-72 - T[619-855] 2.6E-51
ProSiteProfiles
RNA_helicase_DEAD_Q_motif (IPR014014) - T[472-500] 10.777
SMART
Helicase_ATP-bd (IPR014001) - T[491-696] 4.1E-64
Pfam
DEAD/DEAH_box_helicase_dom (IPR011545) - T[496-669] 4.5E-50
ProSiteProfiles
Helicase_ATP-bd (IPR014001) - T[503-681] 32.245
ProSitePatterns
RNA-helicase_DEAD-box_CS (IPR000629) - T[627-635] .
ProSiteProfiles
Helicase_C (IPR001650) - T[692-853] 21.045
CDD
Helicase_C (IPR001650) - T[695-822] 5.25643E-31
Pfam
Helicase_C (IPR001650) - T[707-814] 4.1E-25
SMART
Helicase_C (IPR001650) - T[729-814] 5.6E-28

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
DDX46_HUMAN 63.405 % 1162 0
DDX5_HUMAN 42.958 % 368 2.58E-114
DDX42_HUMAN 45.572 % 399 2.85E-122





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