- Transcript 'KH2012:KH.L4.55.v1.A...' >
- Transcript 'Phmamm.CG.MTP2014.S3...' >
- Transcript 'Haaura.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S1.g00018.01.t
Possible name(s)
DDX42; DDX46; DDX5
Gene model
Location
S1 [128,145 / 135,070]
Amino acid sequence
Length: 1,143
>Haaura.CG.MTP2014.S1.g00018.01.p
MEVDTTISATVNIKQEPVEKDPKNQGTTEENKKSRSRSRSKQKSNIRNRNYRSHHEKKRS
RSRSPGLKKKYSRSYSRHSKGSSKRSRSKRSRSRSRSRDKSRRGRDKKSHTEGQKRKQRS
SSTGSSGGSEERTKNNTNKEANEDNKSKSKSTSETKDKSEKRSRRSRSRSRGRKRSHERR
SSRNERSRKKGRYGKHDKEESRDKDRDVVKDPEKKENNKAKDTLSKDFEQARLEEEMKKR
KDRVETWRKEQKLALGQPSQDDDDDAPGGKQWTLDDDDDDDEEDGEMEEEKEETVKDENG
VEEEKENEKIDSPKKMEEAEEDEDEDDPLDAFMSNLKAENDKHMFGNTTENTSGPKISRV
VAVAKKKSAHVKPGKKKGELMEDDADAMEYSSEEEEESLDSALGKFRNKQQGQGRKLDTV
IDHSKIQYEDYRKKFYVEVPELAAMKEEEVDEMRMNLEHTKVRGKNCPKPIKTWAQAGVS
FKVLNALKKLNFEKPTSIQAQALPVIMCGHDMMGIAKTGSGKTLAFVLPMLRHIMDQRPL
EDKEGPIAVIMTPTRELALQITKECKKFTKPMKLKVVCVYGGTGISEQIAELKRGAEIIV
CTPGRMIDMLAANSGRVTNMRRCTYLVLDEADRMFDMGFEPQVMHIMNAVRPDRQTVMFS
ATFPRQMEALARRILNKPIEVQVGGRSVVCSDVTQHVHILEKDQKYFKLLELLGLYQEQG
SILVFVDKQEHADHLLKDLMGSSYPCMALHGGIDQYDRDSVINDFKNGITGLLIATSVAA
RGLDVKNLILVINYDCPNHYEDYVHRCGRTGRAGSKGFAYTFIVKEQARHAGDIIKALEL
SGASVSKELETLWATYKSDLTAQGKAVSKNSGFTGRGFKFDETEDELVRERKQFQKAALG
LHDSDDESPAKDIDEQIENMFNSKKRVKDVVGPLVLPGAGGESAQGQGGLSGSNIEKLEI
AKRLAVRINVKKNLGAEAQDVTQQAATAILKGGAFQAPKVSAKTIAGQLAEKINQKLNYV
PQEKSENDDEENPDGQGATFKRYEEELEINDFPQTCRWKVTSKDTLSQISEYSEAGITIR
GQYFPSGKQPEEDERKLYLAIEAVSEMAVQKAKNEITRLIKEELIRLQNSYQPINKGRYK
VT*
Nucleotide sequence
Length: 3,429
>Haaura.CG.MTP2014.S1.g00018.01.t
ATGGAGGTAGACACAACTATCAGTGCAACTGTGAATATAAAACAGGAGCCTGTTGAAAAA
GATCCTAAAAATCAAGGGACAACAGAAGAGAACAAGAAATCAAGATCTCGGTCCAGATCA
AAACAAAAATCCAACATAAGAAATAGAAATTATCGCTCTCACCATGAGAAGAAGCGTTCA
AGATCCAGATCCCCGGGCTTGAAAAAAAAATACTCCCGATCTTATTCTCGGCATTCGAAA
GGCTCTTCTAAAAGATCAAGATCTAAACGCTCTCGTTCAAGGTCGAGGTCACGAGATAAA
AGTCGAAGAGGCCGTGATAAAAAATCTCACACGGAAGGTCAAAAACGAAAACAGAGAAGC
TCAAGTACAGGTAGTTCTGGTGGCTCAGAAGAGAGGACGAAGAATAATACTAATAAAGAA
GCAAATGAAGATAATAAAAGTAAATCCAAGTCTACATCTGAAACTAAAGATAAATCTGAA
AAGAGAAGCAGAAGATCAAGGTCTAGATCAAGAGGAAGAAAAAGGTCTCATGAACGACGT
AGTTCAAGAAATGAAAGGTCAAGGAAAAAGGGTAGATATGGAAAACACGACAAGGAAGAA
TCCCGTGACAAAGATAGGGATGTAGTTAAAGATCCTGAGAAAAAGGAGAATAACAAGGCG
AAAGACACATTATCAAAGGATTTTGAACAAGCCCGGTTAGAAGAGGAGATGAAAAAGCGA
AAGGACAGAGTAGAAACCTGGAGGAAAGAGCAGAAGCTCGCTCTCGGGCAGCCGTCTCAA
GACGATGACGATGATGCACCAGGAGGGAAACAGTGGACTTTGGATGATGATGACGATGAT
GATGAGGAGGATGGGGAGATGGAAGAGGAGAAGGAAGAAACCGTGAAAGATGAGAATGGT
GTAGAGGAGGAAAAGGAAAATGAAAAGATAGATTCTCCGAAAAAGATGGAAGAGGCTGAA
GAAGATGAAGATGAAGATGATCCTCTGGATGCATTCATGAGTAATTTGAAGGCTGAGAAT
GACAAACACATGTTTGGGAACACAACAGAAAATACAAGTGGTCCTAAAATCAGCCGGGTG
GTAGCAGTAGCGAAGAAGAAATCGGCGCATGTCAAACCAGGAAAGAAGAAGGGAGAATTA
ATGGAGGATGACGCTGATGCTATGGAATACTCATCAGAGGAAGAGGAAGAATCACTCGAC
AGTGCCTTGGGTAAATTCCGAAACAAGCAGCAAGGTCAAGGCCGTAAGCTCGACACAGTC
ATCGATCATTCAAAAATCCAATATGAAGATTATCGCAAGAAGTTCTATGTTGAGGTTCCT
GAGCTGGCTGCCATGAAGGAAGAAGAAGTTGATGAGATGAGAATGAATTTGGAACATACC
AAAGTTCGTGGGAAGAACTGCCCCAAGCCGATCAAAACTTGGGCACAGGCTGGGGTCTCT
TTTAAAGTACTGAATGCTCTGAAAAAATTGAATTTTGAAAAGCCCACCTCAATACAGGCG
CAAGCTCTTCCCGTTATAATGTGCGGCCATGACATGATGGGTATAGCAAAAACTGGAAGT
GGCAAAACGTTGGCCTTTGTCTTGCCAATGCTCCGACATATAATGGACCAGAGACCTCTG
GAAGATAAGGAGGGTCCAATTGCTGTCATCATGACACCTACAAGAGAACTAGCTCTCCAG
ATCACTAAAGAATGCAAAAAGTTCACCAAACCTATGAAACTGAAAGTTGTTTGTGTGTAT
GGCGGGACAGGGATTTCCGAGCAAATCGCGGAGCTGAAACGTGGTGCCGAAATAATCGTG
TGCACTCCGGGAAGAATGATTGACATGCTCGCAGCGAACAGCGGCAGAGTTACAAACATG
AGAAGGTGTACTTATCTGGTTTTGGACGAAGCGGATCGTATGTTTGATATGGGTTTTGAG
CCACAAGTAATGCACATAATGAATGCCGTCAGACCCGACCGACAGACGGTGATGTTTTCT
GCCACATTTCCCCGTCAAATGGAAGCACTAGCAAGAAGGATACTTAACAAGCCGATCGAG
GTCCAAGTAGGTGGTCGGAGTGTGGTTTGTTCTGATGTCACCCAACATGTCCATATACTT
GAGAAAGACCAAAAATACTTCAAACTGTTAGAGTTGCTCGGACTCTATCAAGAGCAAGGA
TCGATTTTGGTTTTCGTAGATAAACAAGAACATGCTGATCACCTTCTAAAAGATCTAATG
GGCAGTAGCTATCCTTGTATGGCTTTGCATGGAGGTATCGACCAGTATGATAGAGATTCT
GTTATTAACGATTTCAAAAATGGCATCACGGGGCTCCTTATCGCCACCTCGGTTGCTGCT
AGAGGACTGGACGTAAAAAATCTTATCCTGGTTATAAACTATGACTGTCCCAACCACTAT
GAAGACTATGTTCACAGGTGCGGACGTACTGGGCGGGCCGGATCCAAGGGTTTTGCTTAT
ACCTTCATTGTTAAAGAACAAGCGAGACATGCGGGTGATATTATAAAAGCATTGGAGTTG
AGTGGTGCCAGTGTTTCAAAGGAGCTAGAGACCTTATGGGCCACCTACAAGTCAGATCTT
ACAGCTCAAGGAAAGGCCGTCTCCAAAAACAGCGGTTTCACCGGACGTGGATTTAAATTC
GACGAAACCGAAGACGAACTCGTCAGAGAAAGGAAACAGTTCCAGAAAGCAGCTTTAGGG
CTGCATGATTCAGATGATGAATCCCCTGCAAAAGATATCGATGAACAAATCGAGAATATG
TTCAACAGCAAAAAGAGGGTAAAAGATGTTGTTGGTCCCTTGGTATTACCTGGGGCAGGG
GGAGAAAGTGCCCAAGGACAGGGTGGACTTTCTGGCTCAAACATTGAGAAATTGGAAATT
GCAAAGAGGTTGGCAGTTCGTATCAATGTTAAGAAGAATTTGGGAGCTGAAGCTCAGGAC
GTCACCCAACAAGCAGCAACTGCCATCCTTAAAGGAGGAGCGTTTCAAGCTCCGAAAGTC
TCTGCAAAGACCATCGCTGGACAGTTGGCGGAAAAAATTAATCAGAAATTGAACTACGTT
CCCCAGGAGAAAAGTGAAAACGATGATGAAGAGAATCCTGACGGACAAGGCGCAACATTC
AAACGTTACGAAGAGGAACTAGAAATTAATGATTTTCCACAGACATGTAGATGGAAAGTC
ACCTCGAAAGATACACTCAGTCAAATTAGTGAATATAGCGAAGCTGGTATTACTATTCGT
GGGCAGTATTTTCCGTCTGGAAAGCAACCCGAAGAGGATGAGAGAAAACTCTATCTCGCT
ATTGAAGCTGTTTCTGAAATGGCTGTACAGAAAGCTAAGAACGAAATCACCAGACTCATT
AAGGAGGAACTAATAAGACTGCAAAACTCCTACCAGCCTATAAATAAAGGCCGTTACAAA
GTCACGTAA
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[461-683] 1.71E-72 - T[619-855] 2.6E-51 |
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[472-500] 10.777 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[491-696] 4.1E-64 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[496-669] 4.5E-50 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[503-681] 32.245 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[627-635] . |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[692-853] 21.045 |
| CDD |
Helicase_C (IPR001650) - T[695-822] 5.25643E-31 |
| Pfam |
Helicase_C (IPR001650) - T[707-814] 4.1E-25 |
| SMART |
Helicase_C (IPR001650) - T[729-814] 5.6E-28 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX46_HUMAN | 63.405 % | 1162 | 0 |
| DDX5_HUMAN | 42.958 % | 368 | 2.58E-114 |
| DDX42_HUMAN | 45.572 % | 399 | 2.85E-122 |