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TRANSCRIPT CARD

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  1. Transcript 'Haaura.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S201.g03232.01.t

Possible name(s)

SCN4A; SCN8A; SCN9A

Gene model

Haaura.CG.MTP2014.S201.g03232

Location

S201 [777 / 3,079]

Sequences

Amino acid sequence

Length: 375

>Haaura.CG.MTP2014.S201.g03232.01.p
MSAIGVRRDRVMSQLASNARMPAIAFNCLFTASAISDLIEQYFVQPTLFRIIRLFRVTRI
LRLIREAKGIRTLLFALMMSIPALFNIGSLLMLVIFIYAILGMSQFAYVQKIAGVNDLLN
FETFPNSFLVLFQMSTSEGWNTFIEPILRDKPPFCDPTIENPTNNGNCGNSTVGVIYFVT
FVLITFLIVINMYIAIILENFEVATRESSEPLTADDFEQFFEVWQRYDDRLTQFVTFDQL
QHLLHHLDFPLQVRFPNAAFIANARMRITPDGNVHCLEVIIALIKKVLGDSPELNNFKEA
MVQSFMLKCRSKESPNQEETIDTMEYVRRLKAVVVLQRAYRDYKCRLGDVSAESDNSLDS
SNGSFRTESEAQPD*

Nucleotide sequence

Length: 1,125

>Haaura.CG.MTP2014.S201.g03232.01.t
ATGAGCGCTATTGGGGTGCGTCGTGATCGGGTGATGTCCCAACTAGCGAGCAACGCGCGC
ATGCCTGCAATAGCCTTCAACTGCCTGTTCACAGCTAGCGCGATCAGCGATTTGATCGAG
CAGTACTTTGTGCAGCCGACGCTCTTCCGTATCATCAGACTGTTCCGCGTCACAAGAATC
CTGCGACTGATTCGAGAGGCAAAGGGCATACGAACTTTGCTTTTCGCTCTAATGATGTCT
ATTCCTGCCTTGTTCAACATCGGTAGCCTCCTGATGCTCGTAATCTTCATCTACGCCATA
CTTGGCATGTCTCAGTTCGCCTATGTACAGAAAATTGCCGGGGTCAACGACCTTCTGAAT
TTCGAGACTTTTCCAAACTCCTTTCTGGTACTCTTTCAGATGTCAACTTCCGAAGGTTGG
AATACTTTCATCGAACCAATACTCAGAGACAAACCTCCTTTCTGCGATCCGACAATAGAA
AATCCAACGAATAATGGAAATTGTGGGAATTCGACCGTGGGAGTTATATACTTTGTTACG
TTCGTATTAATCACTTTTCTCATCGTGATTAATATGTACATCGCGATAATTCTCGAAAAC
TTTGAAGTGGCGACAAGAGAAAGTTCAGAACCCCTCACTGCTGACGATTTTGAGCAGTTT
TTTGAGGTGTGGCAACGCTATGATGATCGACTAACGCAGTTCGTCACTTTTGATCAGTTG
CAACATCTTCTTCATCATCTCGATTTTCCTCTCCAAGTACGATTTCCAAATGCTGCCTTC
ATTGCTAATGCGCGAATGCGTATCACTCCAGATGGTAATGTCCACTGTCTTGAAGTAATA
ATTGCCTTAATTAAAAAAGTACTAGGAGATTCTCCCGAATTGAACAATTTCAAGGAGGCG
ATGGTTCAATCCTTTATGTTGAAATGTCGAAGCAAGGAGTCACCTAATCAGGAAGAGACC
ATTGATACCATGGAATATGTCAGGCGTCTCAAAGCAGTCGTTGTTTTACAGCGTGCATAC
AGAGATTATAAATGTAGACTGGGCGATGTAAGCGCAGAATCGGATAATAGTCTCGATTCT
AGCAACGGAAGTTTTCGAACAGAAAGCGAAGCTCAGCCGGATTGA

InterProScan

Gene3D
Volt_channel_dom_sf (IPR027359) - T[11-67] 3.6E-5
Pfam
Ion_trans_dom (IPR005821) - T[44-208] 9.3E-34
PRINTS
Na_channel_asu (IPR001696) - T[180-199] 1.6E-11 - T[215-228] 1.6E-11

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SCN2A_HUMAN 49.689 % 328 1.75E-101
SCN4A_HUMAN 51.603 % 338 5.23E-105
SCN9A_HUMAN 51.911 % 338 1.14E-104