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TRANSCRIPT CARD

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  1. Region 'REG00000563' > 
  2. Transcript 'KH2012:KH.C1.159.v1....' > 
  3. Region 'REG00000484' > 
  4. Region 'REG00000566' > 
  5. Transcript 'Haaura.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S2042.g09209.01.t

Possible name(s)

LHX1; LMX1A; LMX1B

Gene model

Haaura.CG.MTP2014.S2042.g09209

Location

S2042 [7,314 / 9,939]

Sequences

Amino acid sequence

Length: 419

>Haaura.CG.MTP2014.S2042.g09209.01.p
MMMKLKTSSHVYHVTCFNCSYCDQQLEKGDEYVINSEFQTIQDKLGLTCKTCWRDEMTSQ
LEDMTSDNVTSPTQNFTEPGENTSPISEKIITSQSFDSLRHSEQNEVAGLDLNSLSIPSH
STMSSSPENTNDVMESVTSPKSQSSAMSQKSDDEGDSSDDEKDSKSLNTSSVKDDDEDKD
SNDRDEYDVGGKRSKRPRTILNASQRRAFKAAFEMSPKPCRKVRESLASDTGLTVRVVQV
WFQNQRAKMKKLAKRQHTQERIKSREQFGYHGYDPMTSLQHQIPPILPSHPDVIMEQGYG
RFHYPHPHNVAMWEQSIGQQPMTYHHQQASNYSEALHYEQMNVPEERHNVMNMTSPSHFN
EPNNNTIFPNHEMMGGQSTASHMFPTANDQEALLDASQSVMSSPMDGIYTMQNNYFNS*

Nucleotide sequence

Length: 1,257

>Haaura.CG.MTP2014.S2042.g09209.01.t
ATGATGATGAAACTAAAAACATCCTCACATGTTTATCATGTCACGTGTTTCAACTGCTCC
TATTGTGACCAACAATTGGAAAAGGGAGATGAATACGTCATTAACAGCGAATTTCAAACG
ATTCAAGACAAACTCGGCCTAACTTGCAAAACATGTTGGAGAGATGAAATGACGTCACAA
CTCGAAGATATGACGTCAGACAACGTTACGTCGCCCACGCAAAATTTTACTGAACCTGGT
GAAAATACTTCGCCTATTTCGGAGAAGATTATTACTTCACAAAGCTTCGATTCATTACGT
CACAGTGAGCAAAATGAGGTCGCGGGTTTAGATTTGAACTCGTTAAGTATACCAAGTCAT
TCGACAATGTCGTCATCACCGGAAAATACGAATGACGTCATGGAATCTGTGACGTCACCA
AAATCTCAATCTTCCGCTATGTCGCAAAAATCTGACGACGAAGGAGATTCCTCCGATGAT
GAGAAAGACTCGAAATCGCTTAATACGTCATCAGTGAAAGATGACGACGAAGATAAAGAT
TCGAACGACAGAGACGAATATGACGTAGGAGGAAAGCGTTCCAAGAGACCTCGCACTATA
TTAAACGCATCTCAACGTCGCGCATTCAAAGCAGCGTTCGAAATGTCACCAAAACCTTGT
AGAAAGGTAAGGGAAAGCCTCGCGTCAGACACTGGTCTCACCGTACGTGTTGTACAAGTT
TGGTTTCAAAATCAGCGCGCTAAAATGAAAAAACTCGCAAAGAGACAACACACACAAGAA
CGAATCAAATCTCGCGAACAGTTTGGTTACCACGGATACGACCCCATGACGTCACTACAA
CACCAGATACCTCCCATACTCCCTTCGCATCCTGACGTCATAATGGAGCAGGGATACGGC
CGTTTTCATTACCCTCATCCTCATAACGTTGCAATGTGGGAGCAGTCAATAGGTCAACAA
CCAATGACTTATCACCATCAACAAGCAAGCAATTATTCAGAAGCGTTACATTATGAGCAA
ATGAACGTTCCCGAAGAACGTCACAATGTCATGAATATGACATCACCTTCACACTTCAAT
GAACCCAACAACAATACTATTTTTCCCAATCATGAAATGATGGGCGGGCAAAGTACAGCG
AGTCACATGTTTCCAACAGCCAATGATCAAGAAGCATTGTTAGATGCTAGCCAATCAGTA
ATGAGTAGTCCAATGGACGGAATTTATACAATGCAAAATAATTATTTTAATTCTTAA

InterProScan

Pfam
Znf_LIM (IPR001781) - T[6-54] 5.0E-6
SUPERFAMILY
Homeobox-like_sf (IPR009057) - T[185-252] 9.41E-19
ProSiteProfiles
Homeobox_dom (IPR001356) - T[192-252] 17.184
SMART
Homeobox_dom (IPR001356) - T[194-256] 2.3E-21
Pfam
Homeobox_dom (IPR001356) - T[195-251] 1.6E-17
CDD
Homeobox_dom (IPR001356) - T[195-251] 4.54081E-18
ProSitePatterns
Homeobox_CS (IPR017970) - T[227-250] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LMX1A_HUMAN 57.798 % 120 1.35E-30
LMX1B_HUMAN 34.106 % 132 1.85E-34
LHX1_HUMAN 28.52 % 95.9 1.18E-21