Aniseed - Transcript Card

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S2232.g09399.02.t

Possible name(s)

AMY1A; AMY1B; AMY1C

Gene model

Haaura.CG.MTP2014.S2232.g09399

Location

S2232 [9,481 / 11,720]

Sequences

Amino acid sequence

Length: 264

>Haaura.CG.MTP2014.S2232.g09399.02.p
MLPGSAALAFINNHDNQRGHGGGGSIVTFKDPYDLKILTAYMLAWPYGVPRVMSSYYFED
PDQGPPSSQRGVSEDGSCTNGWVCEHRWRQIRNMFGFATAVIGTSMNDWWTNGNNQIAFA
RGNKGFIAINGAGYDMSENLQTGLPQGTYCNVIDGDYTAGGCGGECIAVDSNGNANIFIS
GGSSDPIVAIHANAQSDSCNTGETGGGGTGTGTGTGTGGGDTACTDCTCNDKYECGYLGI
DGPECETQGCLWCPTNDGSSDPWC

Nucleotide sequence

Length: 792

>Haaura.CG.MTP2014.S2232.g09399.02.t
ATGTTGCCAGGATCAGCAGCCTTGGCTTTTATCAATAACCACGACAACCAGAGAGGACAT
GGTGGTGGCGGTAGCATTGTCACATTCAAAGATCCATATGATTTGAAGATCCTGACTGCT
TACATGTTGGCCTGGCCATACGGAGTACCAAGAGTGATGTCTAGTTACTACTTTGAAGAT
CCGGATCAAGGACCCCCATCCAGTCAACGTGGCGTAAGCGAAGACGGTTCATGTACGAAT
GGATGGGTATGTGAGCATAGATGGCGACAGATAAGGAATATGTTTGGATTTGCCACCGCA
GTCATAGGCACCTCCATGAATGACTGGTGGACCAACGGGAACAACCAGATTGCTTTCGCT
CGCGGAAACAAGGGATTTATTGCTATAAATGGTGCTGGATATGACATGTCAGAGAATCTA
CAAACTGGATTACCGCAAGGAACCTACTGCAATGTAATTGATGGTGATTATACCGCAGGA
GGTTGCGGCGGTGAATGTATAGCGGTCGATTCCAATGGCAATGCAAACATATTTATCTCT
GGAGGCAGCTCTGATCCGATAGTCGCAATACATGCCAACGCACAATCAGACTCATGCAAC
ACTGGTGAAACTGGGGGAGGTGGCACTGGCACTGGCACCGGTACTGGTACAGGAGGTGGT
GATACTGCTTGTACCGACTGCACGTGCAACGACAAATACGAATGCGGGTATCTCGGAATA
GACGGTCCCGAATGCGAAACACAAGGATGTCTGTGGTGTCCGACGAATGATGGCAGTAGT
GATCCATGGTGT

InterProScan

SUPERFAMILY	Glycoside_hydrolase_SF (IPR017853) - T[2-124] 1.44E-19
Gene3D	Glyco_hydro_b (IPR013780) - T[104-196] 1.8E-34
SMART	A-amylase_C (IPR031319) - T[107-195] 4.8E-39
Pfam	A-amylase/branching_C (IPR006048) - T[110-191] 4.9E-15
ProSiteProfiles	P_trefoil_dom (IPR000519) - T[222-264] 11.576
CDD	P_trefoil_dom (IPR000519) - T[230-264] 9.11743E-4

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
AMYP_HUMAN	48.095 %	191	2.1E-57
AMY1_HUMAN	48.571 %	193	1.67E-58
AMY2B_HUMAN	48.095 %	191	8.13E-58