- Transcript 'Boleac.CG.SB_v3.S39....' >
- Transcript 'KH2012:KH.C2.1107.v1...' >
- Transcript 'Haaura.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S2350.g09534.01.t
Possible name(s)
DAW1; POC1B; SPAG16
Gene model
Location
S2350 [8,684 / 11,134]
Amino acid sequence
Length: 618
>Haaura.CG.MTP2014.S2350.g09534.01.p
MANEIEEGPFYLEEVSIADDSDDDFLYEEVPVDDDSSFYSLENLDQTVYAIEEAKQSEKT
STKLDTSHEVSVLQQPEVIEDFVRNFLMKMGLNRTLECFQTEWYELQQKGVLLEDEMGQV
PDAYQRNQYLTNEVKRLKGEVELFRNSAHKTKDDYTKLLKERDYHRMHHRRVVQEKNSLI
TDLKRLKRHYKSYEPTLLQLKSKYELAMKEKMLAKLERDRAVGQVTGLQATLRNLENGKD
MILPTLSGYRKERGSQMEGPSQRMLRQSREEAEMEKTMAPVSLVLETGKKEKEKFHPNDS
SFPADDGVNPYLSMPFTTPPHFSRPGGLKITTTVEAHELSISRVALHPRKQVAVTTSDDR
LWKMWSLPEGKIIMTGDGHTDWIADCDFNPDGSQLVTGSGDTSVKLWDFARACCILTLSE
HTHAVWGVTWHSCGDFIASCSMDGTSKIWDANSERCRSTLRGHTDSVNSIQFLHYSNILL
TCSADKTISLWDARTGLCPQTFYGHMHSINHSVFNLQGNTIASCDSYGMVKLWDTRQIAE
TCTFNVGPHPANKLCFDPSGKILAVASNDGTVKMINVENNEVNFVSGHQDAVQTVVFDHL
GQSMLSGGSDGILQLWS*
Nucleotide sequence
Length: 1,854
>Haaura.CG.MTP2014.S2350.g09534.01.t
ATGGCTAACGAAATCGAAGAAGGTCCTTTTTATTTGGAGGAAGTTTCCATCGCTGACGAC
TCCGACGACGATTTCCTATACGAAGAAGTTCCGGTGGACGACGATTCTAGTTTTTACTCG
TTGGAAAACCTAGACCAAACGGTTTACGCTATCGAAGAGGCGAAGCAGAGCGAAAAAACT
TCGACGAAGCTTGACACGAGCCATGAAGTTTCTGTTTTACAGCAACCAGAGGTCATTGAA
GATTTCGTGCGGAATTTTTTAATGAAAATGGGCCTGAACAGAACCTTAGAGTGCTTTCAA
ACCGAATGGTACGAGCTGCAGCAGAAGGGAGTTCTTCTTGAGGACGAAATGGGACAGGTT
CCTGACGCCTATCAGAGAAACCAGTACCTCACCAATGAGGTCAAAAGGTTAAAGGGCGAA
GTTGAACTGTTCAGGAATTCTGCCCATAAAACGAAGGACGACTACACCAAGCTTCTGAAG
GAAAGAGATTATCATCGAATGCATCACCGACGAGTCGTTCAAGAGAAAAATTCTTTGATC
ACCGATCTCAAACGCTTGAAACGGCATTACAAATCGTACGAACCCACTCTCCTACAACTG
AAATCCAAGTACGAGCTCGCTATGAAGGAAAAAATGCTGGCCAAACTCGAACGAGATCGT
GCCGTCGGTCAAGTCACCGGTCTGCAAGCGACGCTGAGAAATCTAGAGAATGGTAAAGAC
ATGATTTTACCTACGCTCAGTGGGTACAGAAAGGAAAGAGGCTCGCAAATGGAAGGTCCA
TCGCAACGAATGCTCCGTCAATCGAGGGAAGAAGCTGAAATGGAGAAAACGATGGCGCCA
GTGAGTCTGGTTCTAGAAACGGGTAAAAAGGAGAAAGAAAAGTTTCACCCGAACGACAGC
AGCTTTCCTGCGGACGACGGGGTGAACCCCTACTTGTCGATGCCCTTCACAACCCCTCCA
CACTTCAGTAGACCCGGGGGTCTGAAAATCACGACCACGGTGGAGGCCCACGAGTTGTCC
ATCAGCCGGGTGGCACTACATCCACGGAAACAGGTCGCCGTGACGACTTCAGACGATCGT
TTGTGGAAGATGTGGTCTCTTCCAGAGGGAAAAATAATTATGACAGGAGACGGGCACACT
GACTGGATCGCTGACTGTGACTTTAACCCCGACGGAAGCCAGCTTGTTACCGGGAGTGGG
GACACCAGCGTAAAGTTGTGGGACTTTGCGAGAGCCTGCTGTATATTAACGCTGAGCGAG
CACACTCACGCAGTCTGGGGAGTGACCTGGCATTCGTGCGGTGATTTCATCGCGTCGTGT
TCTATGGACGGCACATCGAAAATATGGGATGCAAACAGCGAGAGATGTAGGTCAACATTA
CGAGGTCACACCGACTCCGTCAACAGCATCCAGTTCCTTCATTACTCCAACATATTGCTG
ACTTGTTCGGCAGACAAGACGATTTCGCTCTGGGACGCGAGGACAGGTCTTTGTCCGCAA
ACATTCTACGGCCACATGCATTCGATCAACCACTCTGTCTTCAACCTCCAAGGAAACACG
ATCGCGTCTTGCGACAGTTACGGCATGGTCAAGCTGTGGGATACGAGACAAATAGCGGAG
ACGTGCACCTTTAACGTTGGTCCCCACCCGGCAAACAAACTTTGTTTCGACCCGTCCGGG
AAGATTCTGGCCGTGGCAAGCAACGACGGGACTGTGAAAATGATTAACGTCGAGAATAAT
GAAGTTAATTTCGTGTCGGGGCACCAGGATGCGGTCCAGACCGTCGTCTTTGATCACCTG
GGTCAATCTATGTTATCCGGGGGTTCTGACGGAATCCTGCAGCTCTGGTCTTGA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[325-435] 4.1E-28 - T[436-617] 2.5E-49 |
| SMART |
WD40_repeat (IPR001680) - T[327-366] 0.029 - T[369-408] 1.7E-10 - T[411-450] 7.9E-9 - T[453-492] 1.3E-10 - T[495-534] 6.7E-4 - T[537-576] 0.003 - T[578-617] 5.1E-4 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[328-616] 7.19E-77 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[334-617] 56.816 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[334-375] 10.709 - T[376-417] 14.619 - T[418-459] 13.148 - T[460-501] 14.619 - T[502-543] 8.804 - T[585-617] 14.084 |
| Pfam |
WD40_repeat (IPR001680) - T[371-408] 1.4E-6 - T[414-450] 3.3E-6 - T[455-492] 1.9E-7 - T[498-534] 0.029 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[395-409] . - T[437-451] . - T[479-493] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[395-409] 9.3E-7 - T[479-493] 9.3E-7 - T[604-617] 9.3E-7 |
| Pfam |
Apc4_WD40_dom (IPR024977) - T[550-585] 7.9E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| POC1B_HUMAN | 30.742 % | 137 | 1.28E-34 |
| SPG16_HUMAN | 47.812 % | 594 | 0 |
| DAW1_HUMAN | 30.556 % | 143 | 3.37E-37 |