- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Cisavi.CG.ENS81.R3.1...' >
- Transcript 'Boleac.CG.SB_v3.S446...' >
- Transcript 'Haaura.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S240.g03597.01.t
Possible name(s)
DES; PRPH; VIM
Gene model
Location
S240 [53,636 / 57,781]
Amino acid sequence
Length: 488
>Haaura.CG.MTP2014.S240.g03597.01.p
MSHHASKRLFEEKTSSYRRHFGGDRSVFDYNSPASGARSKTTRSFRSRSGDRAGGHVFHD
HVTMSRSAPVTGGISMREINHMTESMGPEFQGMRINEKVELQHLNNRFADYINKVRTLEQ
ANRVLEEQVAQLSMSKPSRLAESYEDELNRLRREIDSLTNERSSLAMQLENCLIEVARWK
DMFEEEQANRKEVEDDLTGMRKDCDDATLVRLDLERRLETLQEEIEFLKKTHEQEMEEME
DRIRSTEIKIEAAPAPDLEEALREIRQQYEDIARKNREEAEKWYQDKVVGLKNQSAQNDD
AIRAIKGEVSEYRKTVQTLNLEIDSLRGTNDSLQRNLNDLEDRYNRDLNSHQDTVSNLQG
ECDDLKAQMAQHLRQYQELMDVKMALDMEIATYRKLLEGEESRIGERVRTMTASVPMYAP
VGAFRGKSNIHHETADSHAIDDVETVTTKKVVVKTIETKDGKVVSQTEDVREQSSGNADA
ADKLAGL*
Nucleotide sequence
Length: 1,548
>Haaura.CG.MTP2014.S240.g03597.01.t
ATGCATGCGTTAACCATCAATGACGTCATTTTCACGCAATCCCTGGATACCATATAAGCG
AGAATTTCGAAAGAACAGAAAGAAATGTCTCACCACGCAAGCAAACGACTTTTTGAAGAA
AAAACATCCAGTTATCGTCGTCATTTTGGAGGAGATAGATCTGTATTCGACTACAACTCA
CCCGCCTCTGGTGCACGCAGCAAAACAACTCGATCATTCAGATCCCGCAGTGGTGATAGA
GCTGGAGGACATGTATTCCACGACCACGTTACCATGAGCCGTTCTGCACCTGTGACAGGC
GGAATCTCGATGAGGGAAATCAACCACATGACGGAAAGCATGGGTCCCGAGTTCCAAGGA
ATGAGAATCAACGAAAAAGTTGAACTGCAACATCTGAACAATCGTTTCGCTGACTACATC
AACAAGGTACGAACTCTCGAGCAAGCCAATCGCGTTCTCGAAGAGCAAGTTGCCCAGCTT
TCCATGTCCAAACCATCACGACTAGCTGAGTCATACGAAGACGAACTGAATAGACTGCGA
CGTGAAATTGACTCTCTAACCAATGAGCGTTCTTCTCTCGCCATGCAACTGGAAAATTGT
CTTATCGAAGTCGCCAGATGGAAAGATATGTTTGAAGAAGAGCAGGCTAACCGCAAAGAA
GTCGAAGATGACCTTACTGGAATGAGAAAGGACTGCGATGACGCTACTTTGGTACGGTTG
GATCTTGAAAGAAGACTAGAAACCCTACAGGAGGAAATCGAGTTCTTGAAGAAGACACAC
GAGCAGGAGATGGAAGAAATGGAAGACAGAATCCGTTCAACTGAAATCAAAATCGAAGCA
GCTCCCGCACCGGATCTGGAAGAGGCCTTGCGCGAAATCCGGCAGCAATATGAAGACATT
GCTCGCAAGAACAGAGAAGAAGCAGAGAAATGGTACCAAGATAAGGTGGTTGGACTCAAA
AACCAATCAGCACAGAATGACGACGCAATCAGAGCTATTAAGGGTGAAGTCAGTGAATAC
AGGAAAACTGTTCAAACTCTCAATCTAGAAATCGATTCTCTCAGAGGAACGAACGATTCT
CTTCAACGAAATCTGAATGATTTGGAAGACCGTTACAACCGTGACTTGAACTCCCATCAG
GATACTGTATCCAACTTACAGGGCGAATGCGACGATCTGAAAGCCCAGATGGCGCAGCAT
CTCAGACAATATCAAGAATTGATGGATGTCAAGATGGCTCTCGATATGGAAATTGCCACT
TATAGAAAACTGTTGGAAGGAGAGGAAAGCCGAATTGGAGAACGAGTCCGAACGATGACA
GCATCAGTACCGATGTATGCTCCAGTAGGAGCCTTCCGTGGTAAAAGCAACATACACCAT
GAAACTGCTGATTCCCACGCCATCGATGACGTCGAAACAGTTACCACAAAGAAGGTTGTA
GTGAAAACAATTGAAACGAAAGATGGCAAGGTCGTCAGCCAAACAGAGGATGTTCGTGAA
CAATCCTCAGGTAACGCTGATGCAGCAGACAAGCTCGCCGGACTGTAA
| PANTHER |
IF (IPR001664) - T[36-481] 1.3E-128 |
| Pfam |
IF (IPR001664) - T[96-403] 4.6E-100 |
| SMART |
IF (IPR001664) - T[96-403] 1.8E-129 |
| PRINTS |
Keratin_I (IPR002957) - T[193-216] 1.1E-15 - T[246-266] 1.1E-15 - T[318-333] 1.1E-15 - T[344-370] 1.1E-15 |
| ProSitePatterns |
Intermediate_filament_CS (IPR018039) - T[390-398] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| VIME_HUMAN | 40.909 % | 337 | 2.34E-111 |
| DESM_HUMAN | 41.737 % | 300 | 4.19E-97 |
| PERI_HUMAN | 39.157 % | 283 | 2.75E-90 |