- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Harore.CG.MTP2014.S1...' >
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- Transcript 'Haaura.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S243.g03614.01.t
Possible name(s)
LRFN1; LRFN2; NYX
Gene model
Location
S243 [19,330 / 22,211]
Amino acid sequence
Length: 502
>Haaura.CG.MTP2014.S243.g03614.01.p
MLDKNSRAKWCFCATLIWMYVGSVSCMKSPHTLSDCDKSIPTVNCTGKKFDQLPATDDSI
LEVLYMYFDKNEIAEVKILHFEKYVNLSYLSLRQNQINNIESHSFDTNVDLIHIDLSHNN
LSYLSPDLFRKLEFLEYVYMDNNKLKRIESEMFNHMTKLQDVRLQSNQLEYVGEDCFVQS
NRLHSLYLEFNNLQIPEKRWFLSFHPARTSEAYLDDNPWSCDCRMIEFHKWCTNHAWFLE
HDRRGVSVPKCHYPQRLKGTSLAQIKSADELVCENVAITSQDSSLLVIKAVEGSLVTLPC
NATGSPIPIVNISNPKDEEIVSSKGSVTFHIESTKTAHSGLYYCRASGFDTKGLAFIKTV
RIRLTVYTSAGHVAIIILVSLLAFAALMLSSTWYYKKRLSKRSEYSSLSNQAVYYDTQEE
EAAQRAANNVESMQSPSFASPPTCVSNPYQDETEDDDDEEEDIQYSKDTEKTDSAIVSFS
RANTSTLLPFMYSLFFVCSRV*
Nucleotide sequence
Length: 1,614
>Haaura.CG.MTP2014.S243.g03614.01.t
ATGTTGGATAAAAATTCTCGCGCGAAGTGGTGTTTCTGTGCAACACTGATATGGATGTAC
GTTGGTTCAGTGTCATGTATGAAGTCTCCGCACACATTGTCTGATTGCGACAAGAGCATC
CCTACTGTTAATTGTACAGGAAAGAAATTCGATCAGTTGCCCGCGACTGATGATTCAATA
CTGGAAGTGTTATATATGTACTTCGATAAAAACGAAATAGCGGAAGTGAAAATTCTACAT
TTTGAAAAATACGTCAACTTGAGTTACTTATCGTTGCGGCAAAATCAGATCAATAATATT
GAGTCACATTCCTTTGACACTAACGTGGATTTGATCCATATCGATTTGTCTCATAACAAT
CTTTCGTATTTATCACCGGATCTTTTTCGCAAACTCGAATTCCTGGAATACGTTTATATG
GACAACAATAAATTGAAACGAATCGAATCAGAAATGTTTAATCACATGACCAAGTTACAA
GACGTTCGATTGCAAAGCAATCAACTGGAATACGTGGGAGAAGATTGTTTCGTTCAGTCT
AATCGTCTGCATAGTCTTTACCTGGAATTCAATAACCTACAGATACCAGAGAAGAGATGG
TTCCTATCGTTTCATCCCGCAAGAACAAGCGAAGCATACCTCGATGACAACCCCTGGTCA
TGTGACTGCAGAATGATAGAATTTCACAAATGGTGCACCAATCACGCGTGGTTTTTAGAA
CATGATAGACGTGGGGTGAGTGTACCTAAATGTCACTATCCACAACGACTGAAAGGAACT
AGCCTCGCCCAAATAAAATCGGCTGATGAACTCGTGTGTGAGAATGTAGCAATCACATCT
CAAGATAGCTCACTTTTAGTCATCAAGGCCGTTGAAGGATCGTTGGTGACCCTACCTTGC
AATGCTACGGGCTCACCAATTCCCATAGTAAACATAAGTAATCCCAAAGACGAAGAAATA
GTGTCATCGAAAGGTTCTGTGACGTTTCACATTGAGTCAACAAAAACAGCTCATTCCGGT
CTCTACTATTGTAGAGCTTCAGGATTTGACACAAAAGGCTTGGCGTTCATTAAAACCGTA
CGAATTAGGTTGACGGTTTATACATCTGCTGGACATGTTGCTATCATCATATTGGTTAGC
CTGCTCGCGTTTGCTGCTCTGATGCTAAGCAGTACGTGGTACTACAAGAAAAGGCTAAGT
AAGCGAAGCGAATATTCGAGTTTGTCTAATCAGGCCGTTTATTACGATACACAAGAAGAA
GAAGCTGCTCAAAGAGCGGCGAACAACGTTGAGTCGATGCAATCTCCTTCTTTTGCCTCC
CCACCAACATGCGTCTCCAACCCATACCAGGATGAGACCGAGGACGATGACGATGAAGAA
GAGGATATACAATACAGCAAAGATACGGAGAAGACCGACTCTGCCATTGTATCTTTTTCC
CGTGCCAATACTTCAACTCTTCTACCATTTATGTATTCATTATTTTTTGTATGTTCACGT
GTATAGACTATTTTTCAAACTAATTTTATACTTCTGGTCGATTTAGTGGCTCGTAATCTT
GATCTTTGTGGCGGTGGTTGGCGTCTTGCGTTTGGAGATTCGTATGTGAACTAA
| Gene3D |
LRR_dom_sf (IPR032675) - T[26-280] 7.0E-45 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[84-107] 94.0 - T[109-131] 15.0 - T[132-155] 2.5 - T[156-179] 12.0 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[86-145] 7.8E-12 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[86-107] 7.535 - T[110-131] 6.873 - T[134-155] 5.717 - T[158-179] 4.793 - T[182-203] 4.971 |
| SMART |
Cys-rich_flank_reg_C (IPR000483) - T[217-274] 0.0035 |
| SMART |
Ig_sub (IPR003599) - T[285-367] 6.8E-6 |
| Gene3D |
Ig-like_fold (IPR013783) - T[287-352] 1.7E-9 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[289-350] 2.44E-9 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[292-361] 7.504 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRC24_HUMAN | 25.143 % | 84.7 | 1.91E-17 |
| LRFN1_HUMAN | 24.786 % | 94 | 3.68E-20 |
| LRFN2_HUMAN | 28.421 % | 86.7 | 7.62E-18 |