- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'Haaura.CG.MTP2014.S3...' >
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- Transcript 'Haaura.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S24.g00701.01.t
Possible name(s)
LRP4; LRP6
Gene model
Location
S24 [92,992 / 105,610]
Amino acid sequence
Length: 1,775
>Haaura.CG.MTP2014.S24.g00701.01.p
MCKGGYRECILLAYKCDGDQDCPDNSDEKYCNNTCSMEDFRCKDGQCIPLTYRCDKSEDC
HDGSDELECAERETLVCMANEFRCTSNLCISEAWRCDGDQDCGDNSDEVNCSACGRDQFK
CKASLRCIRLSWRCDGEVDCMDKSDEMFCDRCEKNQYKCSDGQCIGTHKLCDGHVDCFDR
SDEPPVRMCDSNVTDSNVTKKQCHNGNGGCRHICTNTVNGPVCSCNKGHQLGEDGVSCVD
IDECVIESSCSHLCVNSNGSYTCSCLYGYALRRDGRTCKASGPEPSLLFANRIDIRKMQP
ERHELKPVLQNLKNAIALGRELMFWSDVTLDSIKCSFMNGSAVREVVSVGLESPVGIAVD
WIHDLLYWTDSGTSKIEVSSLNGDTRKVLIWQELEKPRAIALHPIKSLMFWTDWGVVPRV
ESAWMDGTARRTIAYTQLYWPNGLTIDYTRDHVYWVDAKHHVIERANLDGQNRQAVISRG
LPHPFAITIFEDKLYWTDWETKSISSANKFTGSSRHTIRNHLHFPMGIKTYHPLRQPEGE
NNCSHSHCSHLCLPKPEGFTCVCKTGFRKINFTHCAEEIDEFLIFARKSDIRRISFDSNE
LSDTVVPLRDINSAVALDWDNDYVYWSDVQLDTINRARWDGSQQRKIIDASLDSPAGLSI
DWFTNKIYWTDAGLNRIEVALVGGALRSVLIWENLDRPRDILVFPENGLLYWTDWGKQPK
IECASMDGSNRHAIVKNMLKWPNGLALDEEDLRIYWTDAGQSTIESCRLDGSDRKLVLKK
NLPHPFGLTMHKSRVYWTDWTLNSIQSANKHTGGDRKIIRENLDYLMDIQYYHKNRKITN
NPCKERNGNCSHLCLLAHPVGPLQTTEILPSPSMSCACPTGYALRSDRKTCSTQMTKFVV
VARRTDMRLISLDVPYPADVKLDVTAEMVNVIAVDVDAVNEYIYWSDVGLSQISRSLLAT
PEHSEIVINDGLGAADGIAIDEYERKLYWTDARRKLIAVSELDGKLQKVLVYEDVDSPRA
IALHHEIGYLYWTDWGVTAKIERMGMDGTNRSVIVNTDIVWPNGLAIDHDENLLFWADAH
TQVIEFSDMTGKHRKKLPITVQHPYSMSVLAGLLYWTDWQTRNVEVVNLRNYTEQFTMRH
NLPNLMGLKAATVNKSLIMERTDKYGKCRKGNKCSHLCLRSPTTESGFRCACTTGILLAA
DGRSCNEQPENYLLFTSRNSIRRLALDSDKNVYVQLPVTQLQNVIALDYHYELQKIFFTD
VYLDVIRSAEIDGTNTHTLIESNLRTMDGIAVDWIANHLYWTDTGPNVISVAKLDGSKRK
VIIDKQLDEPRAIVVSPTKGKIFWTDWGAKARIESAYMDGSSRKVLVSKEIVWPNGLTLD
GEGEGRLFWVDAHSSLRRIESCDLLGRHRTVQASHVSHGFAITYINHKLYWTDWQTHAIS
VATESSSFKNHSVLIKDIDGLMDIKAVSASHQKGTNACDARKKYGGCTDLCLMQGVKSFA
CVTADVFNSTISTVGIVPTSSKRPPLTSISKNTVTQPTRSSLTTSRNMNGGETATSNGSE
MLALLIGAMIFAAAVGILIGVIVWRHLNKKKLRQQIVLTLGYRNGASQDTLLTSIENVEH
RGNLTQSPIPESKKPLLNPSPYEEIEDVMDQISQLSASLDNLSNCSDVVPQEDELNDSEV
NEKENRDGNDSADNQNDGELDGYVSYRVPSSDDSKSGDELDKDSINVTIILSVAVFACET
DVDRSFSAELTRRPFYYLAAFVHTFSAVLTHLFFF
Nucleotide sequence
Length: 5,809
>Haaura.CG.MTP2014.S24.g00701.01.t
TCAGGGAACGTTTTTTATTTTGTTGATGTTTTCTTTTGGTTCAACGAGTTTGCTCCGGTC
TTGAAGCGTCTATCCATGTTCACGCCCTCGTGTCATGTCAGATACTGTTATTGTTGGATA
AATAATGTTTGTTTGACATTTAGTGTAAATAAAATATTTTTGATTTTTCAAAAGCATCAA
ACCCTACATCTTGTGTTGACGAATCCGAATTGACGTGCAAATCCGGAGAGTGTATTAATG
AAACCTGGTGGTGTGACGGGGACGCGGATTGCTCGGACAATAGTGATGAGGAACAATGCG
TGCAACCGACATGCAAACCAACTGAGTTTGTTTGTGAAAACAAAGAATGCATTATTGCGG
ATTGGCGATGTGACATAGACTTCGATTGCACCGATGGTTCTGATGAAGTTGGCTGTGATG
ACAAATCCGAACTCGTGACTGTTGTTATCGCATCAAACGCAACTTGCCGCAGCGATGAAT
TCATGTGCAAGGGTGGATATAGGGAGTGCATTCTTTTGGCGTACAAATGCGATGGTGATC
AAGACTGTCCTGATAACAGTGATGAGAAATATTGTAACAACACTTGCTCCATGGAAGATT
TTCGATGCAAAGACGGGCAATGCATCCCTCTGACATACAGATGCGATAAATCAGAAGATT
GCCACGATGGCTCAGACGAACTGGAGTGTGCAGAAAGAGAGACTCTTGTTTGCATGGCAA
ACGAATTCCGTTGCACGAGCAACCTCTGCATTAGCGAAGCTTGGAGATGCGACGGTGACC
AAGACTGCGGCGACAATTCCGATGAAGTAAATTGCAGTGCGTGCGGCAGAGACCAATTCA
AGTGCAAGGCAAGTTTAAGATGCATTCGTCTGTCTTGGAGATGTGATGGAGAGGTTGACT
GCATGGATAAGAGCGATGAAATGTTTTGTGACCGATGCGAAAAAAACCAATACAAATGCA
GTGACGGTCAGTGCATCGGAACACACAAACTATGTGACGGTCATGTTGATTGCTTTGATC
GTTCAGATGAGCCACCAGTAAGGATGTGTGACAGCAATGTCACGGACAGCAATGTCACGA
AAAAGCAGTGTCATAATGGAAATGGTGGTTGTAGACACATTTGCACAAATACTGTAAATG
GACCAGTGTGTTCTTGTAATAAGGGCCATCAGCTTGGTGAAGATGGAGTTTCATGTGTCG
ATATTGATGAATGTGTAATCGAAAGCTCCTGTAGTCATCTGTGTGTGAACAGCAATGGCA
GTTACACTTGCTCCTGTCTGTATGGATACGCGCTTCGTCGTGACGGTAGAACTTGCAAGG
CGAGTGGGCCCGAGCCGTCTTTGCTCTTTGCAAACAGAATAGACATAAGAAAGATGCAGC
CGGAACGCCATGAGCTAAAACCTGTTTTGCAGAACCTCAAAAATGCGATAGCACTTGGTA
GAGAGCTCATGTTCTGGAGCGATGTCACCCTAGACTCGATAAAATGCTCGTTCATGAACG
GAAGTGCTGTGAGGGAAGTTGTCAGTGTTGGCCTTGAAAGTCCTGTTGGCATTGCTGTTG
ATTGGATCCATGACCTGCTCTACTGGACAGACTCTGGAACTTCAAAAATAGAGGTTTCAA
GTTTAAATGGAGACACGAGGAAAGTCCTCATATGGCAGGAATTAGAGAAACCAAGAGCCA
TTGCTTTACATCCAATAAAAAGTTTAATGTTTTGGACCGATTGGGGAGTCGTCCCACGTG
TCGAAAGCGCTTGGATGGATGGTACGGCAAGAAGGACCATAGCTTATACTCAACTGTATT
GGCCCAATGGACTCACTATCGACTACACGCGAGATCACGTCTATTGGGTCGATGCGAAGC
ATCATGTTATCGAACGTGCAAACCTCGATGGTCAGAACCGTCAAGCTGTCATAAGTAGAG
GCCTGCCACATCCATTCGCCATCACGATATTTGAAGATAAATTATACTGGACTGATTGGG
AAACCAAAAGTATAAGCAGTGCTAACAAGTTCACTGGCAGCAGTAGACATACCATCAGGA
ACCATCTGCACTTCCCGATGGGTATCAAGACGTATCATCCACTGCGGCAGCCAGAAGGGG
AAAACAATTGCAGTCACAGTCATTGCAGTCACTTATGCTTACCAAAACCAGAAGGCTTCA
CTTGCGTATGCAAAACAGGTTTTAGAAAAATCAACTTCACGCATTGTGCTGAAGAAATAG
ATGAATTTTTGATCTTTGCAAGAAAAAGTGATATCAGGAGAATATCGTTCGATTCCAATG
AACTTTCCGACACAGTGGTTCCACTCAGGGACATCAACAGTGCAGTGGCTTTGGACTGGG
ACAACGACTACGTTTATTGGTCAGACGTTCAGTTGGACACTATCAACCGTGCTCGATGGG
ATGGGTCGCAGCAAAGAAAAATCATAGATGCAAGTCTTGATTCACCTGCTGGATTAAGCA
TCGATTGGTTCACAAACAAAATTTATTGGACGGACGCCGGGCTCAATCGCATCGAGGTCG
CTCTTGTCGGAGGGGCCTTGCGTAGCGTGCTGATCTGGGAAAACTTGGATAGGCCAAGAG
ATATTTTAGTTTTTCCGGAAAATGGATTGTTGTACTGGACTGACTGGGGAAAGCAGCCAA
AAATTGAATGTGCCTCTATGGATGGTTCAAACAGACATGCCATTGTCAAGAATATGCTGA
AGTGGCCAAATGGGCTTGCCTTGGATGAAGAAGATTTGAGAATATATTGGACAGACGCTG
GTCAGAGTACAATCGAATCCTGTCGACTCGATGGCAGTGACAGAAAACTTGTGTTGAAGA
AGAACCTACCTCATCCTTTCGGACTGACCATGCACAAAAGTCGCGTTTACTGGACCGACT
GGACCCTCAATTCGATCCAGAGTGCAAACAAGCACACAGGAGGAGACCGCAAAATTATTC
GAGAAAATTTGGACTATTTGATGGACATTCAGTATTATCACAAGAATCGTAAAATAACCA
ACAATCCTTGCAAAGAGAGGAATGGAAACTGTTCCCATCTGTGCCTGCTCGCCCATCCTG
TTGGCCCTCTTCAAACTACTGAAATCTTGCCTTCTCCTTCCATGTCATGTGCTTGCCCTA
CCGGTTATGCGTTGAGATCTGACAGAAAAACATGCAGCACTCAAATGACTAAGTTTGTCG
TCGTTGCAAGAAGGACAGACATGCGTCTCATCTCATTGGATGTGCCGTATCCTGCCGATG
TTAAGCTGGATGTCACTGCCGAAATGGTCAATGTTATTGCTGTTGATGTAGACGCTGTGA
ATGAATACATTTATTGGTCTGATGTTGGGTTGAGTCAGATATCACGAAGTCTTCTGGCAA
CTCCAGAGCATTCTGAGATTGTTATAAATGACGGCTTGGGAGCTGCTGATGGCATTGCTA
TAGATGAGTATGAAAGAAAACTGTATTGGACAGACGCTCGAAGGAAGCTGATTGCAGTAT
CGGAACTTGATGGGAAGCTGCAAAAAGTCTTAGTGTATGAAGATGTGGATTCTCCCAGAG
CTATTGCACTCCATCATGAAATAGGATATCTGTACTGGACCGACTGGGGTGTGACGGCTA
AAATAGAACGCATGGGCATGGATGGAACGAATAGATCTGTTATTGTAAATACCGATATAG
TTTGGCCAAACGGACTTGCCATTGACCATGATGAAAATCTTCTGTTTTGGGCTGACGCAC
ATACGCAGGTTATTGAGTTTTCTGACATGACGGGAAAACATCGTAAAAAGCTGCCGATAA
CGGTCCAGCACCCGTACAGCATGTCCGTGCTTGCGGGCTTGTTATACTGGACTGACTGGC
AAACTCGAAACGTCGAAGTGGTGAATTTGCGTAATTACACAGAGCAGTTCACGATGCGAC
ACAATCTGCCTAATTTGATGGGTCTAAAGGCAGCAACAGTTAACAAATCTTTGATAATGG
AGAGAACCGATAAGTATGGCAAATGCAGAAAAGGAAATAAGTGTTCTCACTTGTGTTTGA
GAAGTCCTACTACGGAGAGTGGCTTCAGGTGCGCCTGTACCACAGGAATTCTCTTGGCGG
CCGATGGCAGAAGTTGCAATGAACAGCCAGAGAACTATCTATTGTTTACTTCCCGTAACA
GCATAAGAAGATTGGCGTTAGATTCCGACAAAAACGTCTATGTTCAGCTGCCTGTTACCC
AACTGCAAAATGTTATTGCATTGGATTATCATTATGAGCTGCAGAAAATATTTTTCACTG
ACGTGTACCTGGACGTGATACGATCCGCTGAAATTGATGGCACTAATACACATACGTTAA
TAGAAAGTAACCTAAGAACAATGGATGGGATTGCTGTTGATTGGATTGCCAATCATTTGT
ACTGGACTGACACAGGACCGAATGTTATATCTGTTGCCAAGCTTGATGGAAGTAAAAGAA
AAGTCATCATTGATAAACAGTTGGATGAACCTCGCGCCATTGTCGTGTCTCCGACGAAAG
GAAAGATTTTCTGGACAGACTGGGGAGCTAAAGCACGCATTGAGAGCGCCTACATGGACG
GATCTTCTCGAAAGGTCCTCGTATCTAAAGAAATAGTATGGCCAAACGGATTGACGCTCG
ATGGTGAAGGTGAAGGAAGACTATTCTGGGTAGACGCTCACAGTTCACTGAGACGAATCG
AATCGTGTGATCTTTTGGGACGTCACAGAACTGTGCAAGCCTCGCATGTGTCTCATGGTT
TTGCCATAACATACATAAATCACAAGCTCTACTGGACGGATTGGCAAACGCACGCGATAA
GCGTCGCCACGGAATCCAGCTCTTTCAAAAATCATTCCGTTCTTATTAAAGATATCGACG
GTTTGATGGATATCAAGGCTGTTTCAGCATCTCATCAAAAGGGAACCAATGCCTGCGATG
CCAGGAAGAAATACGGCGGCTGCACTGACCTTTGTCTGATGCAAGGTGTGAAAAGTTTTG
CGTGTGTCACAGCAGATGTGTTCAATTCAACAATTTCAACAGTAGGCATTGTGCCTACAA
GCAGCAAACGGCCTCCTTTAACCAGTATTAGTAAAAATACTGTAACGCAGCCTACACGAA
GCAGTCTGACAACTAGCAGAAATATGAATGGTGGAGAAACGGCAACATCCAATGGTTCAG
AAATGCTGGCTTTATTGATCGGTGCCATGATCTTTGCTGCTGCTGTTGGAATTCTGATCG
GAGTCATTGTGTGGAGGCATCTCAACAAGAAGAAATTGAGACAACAGATCGTGCTAACCT
TAGGATACCGCAATGGTGCGAGTCAAGATACTCTGCTGACTTCAATAGAGAATGTGGAGC
ACAGAGGAAACCTTACCCAATCACCTATACCAGAATCCAAGAAACCGTTACTGAATCCGA
GTCCGTATGAGGAAATCGAGGATGTGATGGATCAAATATCTCAACTGTCAGCATCTTTAG
ACAACCTCAGTAACTGTAGTGATGTGGTGCCGCAGGAGGATGAACTTAATGACTCTGAGG
TGAATGAAAAAGAGAACCGTGATGGTAATGATAGTGCGGACAATCAGAATGATGGAGAAC
TCGACGGTTACGTAAGTTACCGAGTTCCAAGCTCGGACGATTCAAAATCCGGGGACGAAC
TGGACAAAGATTCTATAAATGTTACTATAATATTGTCCGTAGCTGTATTTGCTTGCGAAA
CAGATGTAGATCGTAGCTTCAGCGCCGAACTAACCAGGCGACCTTTCTACTACTTGGCTG
CTTTCGTTCATACTTTTTCTGCAGTCCTAACGCACTTATTTTTCTTTGA
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[1-33] 7.7E-6 - T[34-71] 8.5E-13 - T[76-113] 6.6E-15 - T[114-150] 6.4E-6 - T[151-191] 3.0E-9 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[1-32] 10.288 - T[34-70] 13.938 - T[76-112] 13.975 - T[113-150] 12.637 - T[151-190] 12.35 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[1-31] 2.62E-5 - T[34-71] 6.02E-10 - T[74-111] 3.27E-11 - T[113-149] 1.02E-8 - T[150-186] 2.75E-8 |
| PANTHER |
LRP4 (IPR030799) - T[2-1610] 0.0 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[2-31] 4.25681E-7 - T[35-69] 3.11252E-11 - T[77-111] 6.61951E-14 - T[114-149] 9.57913E-11 - T[152-183] 2.34626E-9 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[2-31] 1.4E-6 - T[33-69] 2.8E-11 - T[77-111] 6.3E-13 - T[113-149] 1.9E-10 - T[151-183] 5.7E-9 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[7-28] 3.7E-36 - T[45-66] 3.7E-36 - T[87-108] 3.7E-36 - T[125-146] 3.7E-36 - T[162-183] 3.7E-36 |
| SMART |
EGF-like_dom (IPR000742) - T[34-70] 140.0 - T[202-239] 1.8 - T[243-279] 2.4E-4 - T[542-576] 0.1 - T[842-892] 0.041 - T[1167-1206] 12.0 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[47-69] . - T[127-152] . - T[164-189] . |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[203-239] 0.28 - T[240-279] 2.7E-8 - T[539-576] 0.043 |
| Pfam |
cEGF (IPR026823) - T[223-243] 1.3E-6 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[240-279] 9.557 - T[539-573] 6.504 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[240-263] . |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[254-265] . |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[263-278] . |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[283-579] 1.1E-122 - T[580-836] 7.3E-94 - T[893-1207] 1.7E-96 - T[1208-1503] 1.6E-96 |
| SMART |
LDLR_classB_rpt (IPR000033) - T[305-343] 0.38 - T[344-386] 2.4E-14 - T[387-430] 5.2E-9 - T[431-473] 7.6E-15 - T[474-515] 3.1E-8 - T[604-644] 5.0E-8 - T[645-687] 6.5E-10 - T[688-731] 8.5E-10 - T[732-774] 1.6E-13 - T[775-816] 2.1E-4 - T[921-963] 0.32 - T[965-1007] 4.3E-9 - T[1008-1051] 5.3E-13 - T[1052-1094] 1.6E-13 - T[1095-1134] 25.0 - T[1234-1276] 5.0E-5 - T[1277-1319] 3.7E-14 - T[1320-1363] 4.2E-13 - T[1364-1409] 2.0E-6 - T[1410-1449] 0.22 |
| ProSiteProfiles |
LDLR_classB_rpt (IPR000033) - T[321-363] 13.15 - T[364-406] 15.284 - T[407-450] 13.521 - T[451-493] 15.354 - T[494-534] 6.722 - T[622-664] 15.888 - T[665-707] 13.196 - T[708-751] 16.12 - T[752-794] 15.331 - T[795-835] 6.768 - T[941-984] 11.456 - T[985-1027] 14.287 - T[1028-1071] 16.7 - T[1072-1113] 9.297 - T[1114-1154] 6.095 - T[1254-1296] 13.196 - T[1297-1339] 15.632 - T[1340-1383] 15.888 - T[1385-1411] 7.604 - T[1427-1473] 7.696 |
| Pfam |
LDLR_classB_rpt (IPR000033) - T[322-361] 1.3E-5 - T[365-404] 1.3E-9 - T[408-448] 4.2E-8 - T[452-490] 9.3E-8 - T[492-521] 2.0E-5 - T[622-662] 5.9E-6 - T[665-705] 1.5E-5 - T[708-749] 6.9E-13 - T[753-790] 1.5E-8 - T[985-1025] 1.1E-8 - T[1028-1069] 1.6E-11 - T[1254-1294] 3.4E-7 - T[1297-1335] 8.8E-10 - T[1340-1380] 3.0E-12 |
| SUPERFAMILY |
Growth_fac_rcpt_cys_sf (IPR009030) - T[543-575] 2.82E-6 - T[831-892] 2.82E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP4_HUMAN | 51.474 % | 1642 | 0 |
| LRP6_HUMAN | 38.808 % | 876 | 0 |
| LRP5_HUMAN | 37.579 % | 829 | 0 |