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  1. Transcript 'Cisavi.CG.ENS81.R22....'
  2. Transcript 'Cisavi.CG.ENS81.R16....'
  3. Transcript 'KH2012:KH.L61.1.v6.A...'
  4. Transcript 'Boleac.CG.SB_v3.S13....'
  5. Transcript 'Haaura.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S2719.g09822.01.t

Possible name(s)

COL24A1; COL4A2; COL4A6

Location

S2719 [756 / 4,183]

Sequences

Amino acid sequence

Length: 577

>Haaura.CG.MTP2014.S2719.g09822.01.p
MGPKGGKGYPGSHGPRGETGTKGQRGPPGYAGSHGLSGHPGEQGPVGFPGVDGCNGSAGD
VGSRGSDGRPGRPGLTGVPGDFGQKGEPAIISDESMIKGERGEDGPFGPVGRPGPAGPVG
PMGPRGYEGPMGPPGPAGSKGMKGELGQEGIGYQGERGEKGSVGSTGGPPDFLEGKPPGF
SGPTHGLPGRNGSRGENGGKGEPGEEGRQGPPGSRGMEGMRGEKGVRGFAGARGPHGIQG
ANGRDGFKGQIGEQGRPGGEGDQGFKGQRGEFGPDGPPGLPGLEGLNGPRGPPGFPGSVG
ERGMRGEPGLQGLNGFPGSVGDRGLTGLPGLIGIPGPPGIGLKGRDGLPGLSGNQGVNGR
PGTPGPKGARGEDGEPGLSIKGEKGKGGMDGLDGLMGLPGSRGRAGQPGKLINQGGDVVG
QAGEPGMRGLKGIRGLQGRNGLSGSAGSKGERGGECDCSDAVGERGEQGKVGPPGFPGTN
GRPGIPGREGERGEQGNSGRMGAPGLNGLIGRAGPEGLPGLKGEPAELGDIIVEKGESGL
PGGQGPPGLDGLPGATGLPGRPGVRGEKVSQDFHIF*

Nucleotide sequence

Length: 2,016

>Haaura.CG.MTP2014.S2719.g09822.01.t
ATGACCTGGTTTTCACGTGACGTCATGGAAAATACGTTAAAAATATAGGATAGCAAGAAG
AGGCGACACAAAAAGAGGGATGCAATAAAAGGACCATGCAACGGAAGAGACTGCAGAAAT
CTTGGACCATGTGGATTCTGTGTTTCCGAAAAAGGAAATAGGGGTTTTCCGGGAAAACAA
GGCGACGTAGGAAACAACGGCCCACTTGGATTTTCGGGGCCAGAGGGACTAATGGGCCCG
AAAGGAGGTAAAGGCTACCCTGGAAGTCACGGACCTCGTGGAGAAACCGGTACAAAGGGT
CAAAGAGGGCCACCGGGATATGCAGGATCACATGGGTTATCGGGGCATCCCGGAGAGCAA
GGGCCTGTCGGCTTTCCTGGAGTGGATGGTTGCAACGGCTCAGCTGGAGATGTTGGGTCA
AGAGGATCCGACGGCCGACCAGGTCGACCTGGTTTGACGGGAGTTCCTGGTGACTTTGGG
CAAAAGGGAGAACCAGCAATTATCAGTGACGAATCTATGATAAAAGGTGAAAGAGGTGAA
GATGGCCCCTTTGGTCCAGTAGGGAGACCAGGACCCGCGGGGCCTGTTGGACCTATGGGT
CCGAGAGGTTACGAAGGACCTATGGGTCCTCCGGGTCCAGCCGGATCTAAGGGAATGAAA
GGCGAACTTGGACAAGAGGGTATAGGTTACCAGGGAGAGAGAGGCGAGAAAGGAAGTGTG
GGATCTACTGGTGGACCCCCTGATTTCTTAGAAGGAAAACCACCAGGATTTTCTGGACCA
ACACATGGCTTACCTGGTCGAAATGGAAGCAGGGGTGAAAATGGTGGAAAAGGCGAGCCT
GGCGAAGAAGGTCGGCAAGGGCCTCCTGGATCCCGGGGAATGGAAGGGATGAGAGGTGAG
AAAGGTGTCCGTGGATTTGCAGGCGCCCGTGGGCCACATGGCATTCAGGGTGCGAATGGC
CGAGATGGTTTCAAAGGACAAATCGGAGAGCAAGGTCGACCTGGAGGAGAGGGAGATCAG
GGATTCAAGGGACAAAGGGGAGAATTTGGACCGGATGGGCCGCCGGGACTTCCAGGACTT
GAGGGTCTTAATGGTCCCAGAGGTCCTCCAGGCTTTCCAGGTTCTGTAGGTGAAAGAGGT
ATGAGAGGAGAACCTGGACTACAAGGACTTAATGGATTCCCTGGATCAGTTGGAGACAGA
GGTCTTACTGGATTACCTGGTCTCATTGGTATACCCGGTCCTCCCGGTATCGGATTGAAA
GGGAGAGATGGTCTTCCAGGTCTTAGTGGCAATCAAGGTGTCAATGGAAGACCAGGTACC
CCGGGCCCAAAAGGGGCCCGTGGTGAAGATGGCGAGCCGGGGCTTTCAATTAAAGGAGAA
AAGGGAAAAGGTGGCATGGATGGATTAGATGGACTGATGGGATTACCCGGATCTAGAGGA
AGGGCTGGACAACCTGGCAAACTCATCAATCAGGGAGGAGATGTAGTTGGTCAGGCTGGG
GAACCAGGCATGCGAGGTCTTAAGGGAATCAGAGGCTTGCAAGGGCGCAATGGATTAAGT
GGATCAGCAGGATCAAAAGGTGAAAGAGGTGGAGAATGTGACTGCAGTGATGCTGTTGGG
GAAAGAGGCGAACAAGGAAAAGTTGGTCCACCTGGTTTCCCTGGGACAAATGGTCGACCA
GGAATACCTGGTCGAGAAGGAGAACGAGGAGAACAGGGTAACTCCGGTCGAATGGGTGCC
CCAGGGCTCAATGGTTTAATCGGACGCGCGGGACCTGAAGGGCTCCCTGGACTAAAAGGT
GAGCCAGCAGAACTAGGCGATATAATTGTCGAGAAAGGGGAATCTGGTCTTCCCGGAGGT
CAGGGTCCCCCTGGCTTGGATGGACTACCAGGTGCTACAGGACTACCAGGACGGCCTGGA
GTGAGAGGAGAGAAGGTGAGTCAAGATTTTCATATATTCTAATTACCGATAGTAAACAAT
TCTTAATATTTGAAAGGGGGAAATAGGTCCTTACGG

InterProScan

Pfam
Collagen (IPR008160) - T[2-60] 9.9E-9 - T[32-88] 3.8E-9 - T[98-150] 1.2E-7 - T[186-241] 7.7E-7 - T[235-289] 1.4E-6 - T[281-337] 6.7E-10 - T[466-523] 3.9E-9

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
COOA1_HUMAN 40.65 % 175 1.92E-46
CO4A2_HUMAN 36.842 % 158 1.09E-40
CO4A6_HUMAN 37.446 % 167 1.12E-43