- Transcript 'Cisavi.CG.ENS81.R22....' >
- Transcript 'Cisavi.CG.ENS81.R16....' >
- Transcript 'KH2012:KH.L61.1.v6.A...' >
- Transcript 'Boleac.CG.SB_v3.S13....' >
- Transcript 'Haaura.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S2719.g09822.01.t
Possible name(s)
COL24A1; COL4A2; COL4A6
Gene model
Location
S2719 [756 / 4,183]
Amino acid sequence
Length: 577
>Haaura.CG.MTP2014.S2719.g09822.01.p
MGPKGGKGYPGSHGPRGETGTKGQRGPPGYAGSHGLSGHPGEQGPVGFPGVDGCNGSAGD
VGSRGSDGRPGRPGLTGVPGDFGQKGEPAIISDESMIKGERGEDGPFGPVGRPGPAGPVG
PMGPRGYEGPMGPPGPAGSKGMKGELGQEGIGYQGERGEKGSVGSTGGPPDFLEGKPPGF
SGPTHGLPGRNGSRGENGGKGEPGEEGRQGPPGSRGMEGMRGEKGVRGFAGARGPHGIQG
ANGRDGFKGQIGEQGRPGGEGDQGFKGQRGEFGPDGPPGLPGLEGLNGPRGPPGFPGSVG
ERGMRGEPGLQGLNGFPGSVGDRGLTGLPGLIGIPGPPGIGLKGRDGLPGLSGNQGVNGR
PGTPGPKGARGEDGEPGLSIKGEKGKGGMDGLDGLMGLPGSRGRAGQPGKLINQGGDVVG
QAGEPGMRGLKGIRGLQGRNGLSGSAGSKGERGGECDCSDAVGERGEQGKVGPPGFPGTN
GRPGIPGREGERGEQGNSGRMGAPGLNGLIGRAGPEGLPGLKGEPAELGDIIVEKGESGL
PGGQGPPGLDGLPGATGLPGRPGVRGEKVSQDFHIF*
Nucleotide sequence
Length: 2,016
>Haaura.CG.MTP2014.S2719.g09822.01.t
ATGACCTGGTTTTCACGTGACGTCATGGAAAATACGTTAAAAATATAGGATAGCAAGAAG
AGGCGACACAAAAAGAGGGATGCAATAAAAGGACCATGCAACGGAAGAGACTGCAGAAAT
CTTGGACCATGTGGATTCTGTGTTTCCGAAAAAGGAAATAGGGGTTTTCCGGGAAAACAA
GGCGACGTAGGAAACAACGGCCCACTTGGATTTTCGGGGCCAGAGGGACTAATGGGCCCG
AAAGGAGGTAAAGGCTACCCTGGAAGTCACGGACCTCGTGGAGAAACCGGTACAAAGGGT
CAAAGAGGGCCACCGGGATATGCAGGATCACATGGGTTATCGGGGCATCCCGGAGAGCAA
GGGCCTGTCGGCTTTCCTGGAGTGGATGGTTGCAACGGCTCAGCTGGAGATGTTGGGTCA
AGAGGATCCGACGGCCGACCAGGTCGACCTGGTTTGACGGGAGTTCCTGGTGACTTTGGG
CAAAAGGGAGAACCAGCAATTATCAGTGACGAATCTATGATAAAAGGTGAAAGAGGTGAA
GATGGCCCCTTTGGTCCAGTAGGGAGACCAGGACCCGCGGGGCCTGTTGGACCTATGGGT
CCGAGAGGTTACGAAGGACCTATGGGTCCTCCGGGTCCAGCCGGATCTAAGGGAATGAAA
GGCGAACTTGGACAAGAGGGTATAGGTTACCAGGGAGAGAGAGGCGAGAAAGGAAGTGTG
GGATCTACTGGTGGACCCCCTGATTTCTTAGAAGGAAAACCACCAGGATTTTCTGGACCA
ACACATGGCTTACCTGGTCGAAATGGAAGCAGGGGTGAAAATGGTGGAAAAGGCGAGCCT
GGCGAAGAAGGTCGGCAAGGGCCTCCTGGATCCCGGGGAATGGAAGGGATGAGAGGTGAG
AAAGGTGTCCGTGGATTTGCAGGCGCCCGTGGGCCACATGGCATTCAGGGTGCGAATGGC
CGAGATGGTTTCAAAGGACAAATCGGAGAGCAAGGTCGACCTGGAGGAGAGGGAGATCAG
GGATTCAAGGGACAAAGGGGAGAATTTGGACCGGATGGGCCGCCGGGACTTCCAGGACTT
GAGGGTCTTAATGGTCCCAGAGGTCCTCCAGGCTTTCCAGGTTCTGTAGGTGAAAGAGGT
ATGAGAGGAGAACCTGGACTACAAGGACTTAATGGATTCCCTGGATCAGTTGGAGACAGA
GGTCTTACTGGATTACCTGGTCTCATTGGTATACCCGGTCCTCCCGGTATCGGATTGAAA
GGGAGAGATGGTCTTCCAGGTCTTAGTGGCAATCAAGGTGTCAATGGAAGACCAGGTACC
CCGGGCCCAAAAGGGGCCCGTGGTGAAGATGGCGAGCCGGGGCTTTCAATTAAAGGAGAA
AAGGGAAAAGGTGGCATGGATGGATTAGATGGACTGATGGGATTACCCGGATCTAGAGGA
AGGGCTGGACAACCTGGCAAACTCATCAATCAGGGAGGAGATGTAGTTGGTCAGGCTGGG
GAACCAGGCATGCGAGGTCTTAAGGGAATCAGAGGCTTGCAAGGGCGCAATGGATTAAGT
GGATCAGCAGGATCAAAAGGTGAAAGAGGTGGAGAATGTGACTGCAGTGATGCTGTTGGG
GAAAGAGGCGAACAAGGAAAAGTTGGTCCACCTGGTTTCCCTGGGACAAATGGTCGACCA
GGAATACCTGGTCGAGAAGGAGAACGAGGAGAACAGGGTAACTCCGGTCGAATGGGTGCC
CCAGGGCTCAATGGTTTAATCGGACGCGCGGGACCTGAAGGGCTCCCTGGACTAAAAGGT
GAGCCAGCAGAACTAGGCGATATAATTGTCGAGAAAGGGGAATCTGGTCTTCCCGGAGGT
CAGGGTCCCCCTGGCTTGGATGGACTACCAGGTGCTACAGGACTACCAGGACGGCCTGGA
GTGAGAGGAGAGAAGGTGAGTCAAGATTTTCATATATTCTAATTACCGATAGTAAACAAT
TCTTAATATTTGAAAGGGGGAAATAGGTCCTTACGG
| Pfam |
Collagen (IPR008160) - T[2-60] 9.9E-9 - T[32-88] 3.8E-9 - T[98-150] 1.2E-7 - T[186-241] 7.7E-7 - T[235-289] 1.4E-6 - T[281-337] 6.7E-10 - T[466-523] 3.9E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COOA1_HUMAN | 40.65 % | 175 | 1.92E-46 |
| CO4A2_HUMAN | 36.842 % | 158 | 1.09E-40 |
| CO4A6_HUMAN | 37.446 % | 167 | 1.12E-43 |