- Clone 'cima876863' >
- Transcript 'KH2012:KH.C5.61.v4.A...' >
- Transcript 'Haaura.CG.MTP2014.S4...' >
- Transcript 'Boleac.CG.SB_v3.S678...' >
- Transcript 'Haaura.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S278.g03939.01.t
Possible name(s)
RARA; RARB; RARG
Gene model
Location
S278 [6,829 / 15,511]
Amino acid sequence
Length: 500
>Haaura.CG.MTP2014.S278.g03939.01.p
MNMIEFQEQWRNRMNGILSDIFSNGTGVTMMMDTSPPMGPPNGHPPQNMHYPPHSIPNGH
HHHSQPTSNMAYSTNHLSGNHHQAALNNQSSYYPWEYTSRSSPDSVGLSSASSSTSGSES
EAIASSYATPPSPPPPPRVYKPCFVCGDKSSGYHYGVASCEGCKGFFRRSVQKNMQYTCH
RNKNCVINKSTRSRCQYCRLQQCFQAGMLRESVRNDRNKKRGKEKDGKSGEGSPGSSTSP
GQTPDDIVVTSEIETVVSTVSQAHIDTFPLTQTLSKYNAENEKAKQPPVEPQKAPLDLWL
WSKFSELSTKSIIKIVEFAKXXXXXXXLTIADQITLLKCACLEILFFRICSRYDPTNDTM
SFSDGLTLNRTQLCNCAFGPMTEQVFSFASSLHPFDLDHTEGGLLCAICLICADRPDLEE
PEKVELLQEPLVEGLKWYSRKRRANKPQVFPKLILKIADLRCISFRGADRVITIRKEIPS
TAMPPLMTEMLINEDTLDN*
Nucleotide sequence
Length: 1,500
>Haaura.CG.MTP2014.S278.g03939.01.t
ATGAATATGATCGAATTCCAAGAACAATGGCGAAACAGAATGAACGGGATTCTGTCCGAC
ATATTTTCGAACGGAACGGGTGTTACGATGATGATGGATACCTCGCCCCCCATGGGCCCT
CCTAACGGTCACCCACCTCAGAACATGCATTACCCTCCGCATTCGATTCCGAATGGGCAT
CATCACCATAGCCAACCGACTTCAAACATGGCCTATTCGACCAATCATCTCTCTGGAAAT
CATCACCAGGCTGCATTGAATAACCAATCCTCATACTATCCATGGGAATATACTTCGAGA
TCATCTCCTGATAGCGTGGGTCTTTCATCTGCGAGTAGCAGCACTTCCGGTTCCGAGTCG
GAAGCGATAGCATCCTCTTACGCCACGCCTCCTTCCCCTCCACCGCCCCCTCGCGTCTAT
AAGCCATGCTTTGTTTGCGGAGACAAGTCCTCAGGTTATCACTATGGAGTGGCGTCATGT
GAAGGATGCAAGGGATTCTTTCGACGTTCTGTGCAGAAGAATATGCAATACACTTGTCAT
AGGAACAAGAATTGCGTCATTAACAAGTCGACGCGTAGTCGTTGTCAATATTGTCGTCTG
CAGCAGTGTTTTCAAGCTGGCATGTTGAGAGAATCTGTAAGAAATGACAGAAATAAAAAG
CGTGGTAAGGAAAAGGATGGCAAATCGGGAGAAGGTTCACCTGGATCATCAACATCACCT
GGACAGACACCGGACGATATCGTTGTGACCTCTGAAATCGAAACGGTCGTTAGCACTGTT
TCTCAAGCACATATCGATACCTTTCCTCTGACGCAAACATTAAGCAAATATAATGCTGAG
AATGAAAAAGCGAAGCAGCCACCCGTCGAACCGCAAAAAGCGCCGTTGGATCTCTGGTTG
TGGAGTAAATTCTCTGAACTTTCAACCAAATCCATCATCAAAATCGTTGAGTTCGCCAAA
CGNNNNNNNNNNNNNNNNNNNCTTACCATTGCTGATCAAATAACGCTGTTGAAATGCGCC
TGTCTCGAAATATTGTTCTTTCGCATTTGTTCCCGATACGATCCTACAAACGACACCATG
TCGTTTTCAGACGGCCTCACTTTGAATCGAACACAGCTGTGTAATTGTGCATTCGGACCG
ATGACAGAACAGGTATTTTCTTTCGCAAGTTCTCTGCATCCTTTCGATTTAGATCATACG
GAAGGAGGACTTCTGTGTGCTATTTGTTTAATATGCGCCGATCGTCCTGACCTCGAAGAA
CCAGAGAAAGTCGAACTATTGCAGGAACCTCTTGTCGAAGGACTGAAATGGTATTCAAGA
AAAAGGAGAGCTAACAAACCTCAAGTTTTTCCCAAGTTAATCTTGAAAATTGCTGATTTA
AGATGTATAAGTTTCAGAGGTGCCGATCGTGTCATTACAATCAGAAAAGAAATACCATCC
ACAGCGATGCCGCCACTAATGACGGAGATGCTGATTAATGAAGACACCCTCGATAATTGA
| PRINTS |
Retinoic_acid_rcpt (IPR003078) - T[117-134] 6.4E-28 - T[350-374] 6.4E-28 - T[387-399] 6.4E-28 - T[417-438] 6.4E-28 - T[461-476] 6.4E-28 |
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[137-232] 8.2E-34 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[140-215] 20.657 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[140-211] 1.3E-39 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[142-209] 1.9E-31 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[143-159] 1.1E-18 - T[159-174] 1.1E-18 - T[192-200] 1.1E-18 - T[200-208] 1.1E-18 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[143-169] . |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[192-263] 7.54E-60 - T[295-491] 7.54E-60 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[204-214] 2.5E-21 - T[307-328] 2.5E-21 - T[328-344] 2.5E-21 - T[395-410] 2.5E-21 - T[452-469] 2.5E-21 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[302-468] 2.6E-13 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[306-464] 2.9E-26 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RARB_HUMAN | 60.056 % | 434 | 1.77E-149 |
| RARG_HUMAN | 58.564 % | 410 | 4.09E-140 |
| RARA_HUMAN | 52.477 % | 431 | 6.64E-148 |