- Region 'REG00000854' >
- Transcript 'Moocci.CG.ELv1_2.S46...' >
- Region 'REG00000855' >
- Transcript 'Haaura.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S283.g03972.02.t
Possible name(s)
LGR4; LGR5; LGR6
Gene model
Location
S283 [39,055 / 44,418]
Amino acid sequence
Length: 1,129
>Haaura.CG.MTP2014.S283.g03972.02.p
MLNENKIETLPGMAFAGNPDIEILSLENINDQVEFPDFSDCSALQKLTISGGKISSLPSN
LCNNLPSLEYLSVDRNRLRNLSGLQSCQHLTVLRASQNEVVKLRSSEMSNLNTLQELDLS
GNDIDEIDQDAFSTMSLQRLNLGNNFFTYLPVRGIGSLRELNVTGVRTLLYLPPIELFHS
LSSLVAFYPYHCCQLAKASRLSGKQWTTRVNQFESYGQHRSQVSPIMAPLFPVSSTPAIQ
CTPDPGPLTPCDDLLPSTALRIFSWLFMVVTFILNSLILLSCGLRYSVQRRQRRRHGHLE
TVDVDGMLASGGNMIDSPYLSSPDAHIVNSDDSDLSKSHYFLNLSRDGGTMSDDNDTFDM
TLCHLAFADVIVTIYTAVILSYDNSTLGEFAEHGAWWQQSAVCHSAGFLLTFGTQLGFCT
IVIMAVERYLVAMHPLQPEKHIKKGLVLTLTLSSAWILSLVTATVTLFGGGGLESGETIR
DMLPAQNGAACLPWTTDFTYVAVLVGVHILFCVIVTLLSLLILCSSPKQTWLIPKKNTRR
QVALAITFNVAFIVPLAMISLYVSGVMTFSKLEPGENGEYYSVGSMVTTIQSDDSGIAVL
DMGRVLAFVMFVIPFRPFLNPILYIIFNKPLRRDLKYLVRKIFVGDTRERHISFPPDQTN
VLETMYDGSVMASHQANNSFPLYPQTVFDSSLLQRTAYDNGGIATPSIFTPSIRTLHTVV
AHSADRSSSNHISTLQGSERGKRRRRRSRSRRTERRPVPDSDLTTESEVITFHRANSAVY
YNPESRERRRKKLSVRNGGVNAKDEFQRLIFPRHPIASSSSHGSDSTVYPILPANRTLTD
LPSANIMNANGAVTKEDTSSKSQSKLVSSKQTTHYDLSALQTLNTPENTTPLSREINNNS
SKSSSASIITGDVTSTTSLSNDADLEVASITSSMIKPAYDVKDVECFEDKDLTKRTSLDS
VRRKGHQRASSREEDYLLLAVRNSSRNEALKELDPNTRSPLSRKNSTASHSSASRLCDMT
KRGEKIISGCDYCDSSASKDSGIHSEIDSTSGASYSDASIGRRLRFSTNGVLTNLLPIPN
TSRVNENDIARFELSAPLKTQDFQIVPATTTSSHIKNFTDILNTETAI*
Nucleotide sequence
Length: 3,513
>Haaura.CG.MTP2014.S283.g03972.02.t
ATGTCTGCTCGCCATGTCCCGGGACCCCGATGTTGTCTAAACTGAACTATAATTTGTGAC
ACTAAGCTACAATGCAAACAGAAATCTATTGGTAAAACTAATGGATTGCTTTGTAATCTG
CTTAGGATGCTGAATGAAAACAAGATTGAAACTCTTCCTGGAATGGCGTTTGCTGGAAAT
CCAGATATCGAAATCTTGTCGTTGGAAAATATCAATGATCAAGTAGAATTTCCAGATTTT
TCCGACTGCTCCGCACTACAGAAACTAACTATATCTGGTGGTAAAATCTCCTCACTTCCT
TCGAATTTGTGCAACAATCTGCCGTCGTTAGAATATCTTTCGGTAGATCGAAATCGACTA
CGTAACCTCTCTGGCTTACAATCGTGTCAGCACCTGACAGTTCTCCGCGCTAGTCAAAAC
GAGGTTGTGAAACTGAGATCAAGCGAAATGAGTAATTTAAACACTCTTCAAGAATTAGAT
CTAAGCGGAAACGATATAGATGAAATTGACCAGGATGCTTTTTCCACCATGTCGCTTCAA
CGATTGAATCTCGGTAACAATTTTTTTACGTATTTACCCGTTCGAGGAATTGGCAGTCTG
CGTGAACTCAATGTAACTGGCGTACGGACACTGCTCTACTTGCCTCCGATCGAGTTATTT
CACAGCCTATCGAGTCTCGTAGCGTTCTATCCGTACCATTGCTGTCAACTAGCGAAAGCT
TCTAGGCTTTCTGGGAAGCAATGGACGACACGAGTAAATCAGTTTGAAAGCTATGGCCAA
CACAGATCACAAGTCTCTCCAATTATGGCCCCTCTATTCCCGGTTTCGTCCACCCCAGCA
ATTCAGTGCACTCCTGATCCAGGACCTTTGACCCCGTGCGATGACCTTCTGCCTTCGACC
GCGCTGCGTATATTTTCCTGGCTCTTTATGGTGGTTACCTTCATTTTGAACAGTCTTATA
TTGTTATCTTGTGGACTCCGATACAGCGTTCAGCGGCGACAACGTCGTCGTCATGGTCAC
CTGGAAACTGTCGATGTCGATGGAATGCTCGCTAGTGGAGGGAACATGATTGATTCGCCT
TATTTAAGCAGCCCAGATGCACACATCGTAAATTCTGACGATTCAGACCTCTCCAAATCT
CACTATTTTCTCAACCTATCCCGTGATGGCGGTACCATGTCAGACGATAATGATACCTTC
GATATGACGCTGTGTCACTTAGCTTTCGCCGATGTTATAGTGACGATATATACTGCAGTT
ATATTGTCTTATGACAATTCGACGTTGGGTGAATTTGCAGAGCACGGTGCTTGGTGGCAA
CAATCGGCCGTTTGTCATTCTGCCGGATTTCTGCTTACTTTTGGAACCCAGCTCGGATTC
TGCACCATAGTTATAATGGCAGTTGAGAGATATCTGGTTGCCATGCACCCGTTACAACCA
GAAAAGCATATAAAGAAAGGCCTCGTTCTCACTCTCACATTGAGTTCTGCTTGGATACTA
TCGTTAGTTACGGCAACGGTCACTTTGTTCGGTGGCGGTGGATTGGAATCGGGCGAGACA
ATTCGAGACATGTTACCTGCCCAGAACGGAGCAGCCTGTCTTCCCTGGACCACAGACTTT
ACATATGTGGCCGTATTGGTGGGCGTTCACATTTTATTTTGTGTAATCGTAACCCTTCTC
TCCCTGCTCATCTTATGCTCCAGTCCAAAACAGACATGGCTTATTCCGAAGAAAAATACC
CGTCGGCAGGTGGCGCTTGCCATCACATTTAATGTAGCTTTTATTGTTCCACTGGCCATG
ATATCACTTTACGTATCCGGAGTTATGACTTTCTCTAAACTCGAGCCAGGAGAAAACGGA
GAATATTATTCAGTCGGCAGTATGGTAACTACGATTCAGTCGGATGACAGTGGCATTGCT
GTATTAGATATGGGACGGGTCTTAGCGTTTGTCATGTTTGTCATACCGTTCAGGCCTTTT
CTGAATCCAATATTATATATCATATTCAATAAGCCGCTGCGTAGAGACCTTAAATACCTT
GTTCGGAAGATATTTGTTGGCGACACGAGAGAAAGGCACATTTCTTTCCCGCCGGATCAA
ACCAACGTGCTCGAAACAATGTACGACGGCAGCGTAATGGCCTCGCATCAAGCGAACAAC
AGTTTCCCTTTGTATCCGCAAACCGTATTCGATTCAAGTCTGCTACAACGCACGGCCTAT
GACAATGGAGGCATTGCAACGCCCAGTATTTTCACTCCCAGTATAAGAACTTTACATACC
GTTGTAGCACATTCGGCTGACCGAAGTTCAAGTAATCACATTAGCACTTTGCAAGGATCA
GAGAGAGGTAAACGGCGACGTAGAAGATCGCGTTCTCGTCGCACGGAGCGACGACCTGTG
CCAGATTCCGACCTGACTACGGAATCGGAAGTAATCACATTTCATCGGGCTAATTCTGCA
GTTTATTATAATCCAGAATCGCGCGAGCGACGAAGAAAAAAGTTGAGCGTGAGAAACGGA
GGAGTAAATGCTAAAGATGAGTTCCAGCGACTCATCTTTCCTCGTCATCCTATTGCTTCC
TCCTCATCCCATGGTTCGGATTCAACCGTGTATCCGATTCTTCCAGCCAATAGGACTCTG
ACAGATTTGCCATCTGCCAATATTATGAATGCTAACGGTGCTGTCACCAAGGAGGATACC
AGTTCAAAATCGCAATCAAAGCTTGTAAGCTCAAAGCAGACAACCCATTACGATCTGTCC
GCCCTCCAGACTTTGAATACACCCGAAAACACTACACCACTTTCGAGAGAAATTAATAAC
AACAGTAGTAAATCATCTAGTGCTTCCATAATCACGGGTGACGTAACCTCAACTACGTCT
TTGAGTAATGACGCAGACTTGGAAGTAGCAAGCATAACGTCATCCATGATAAAGCCTGCT
TACGACGTTAAAGATGTCGAATGTTTCGAAGATAAAGATTTAACAAAGAGAACTAGTCTT
GATTCTGTACGCCGAAAAGGTCATCAGCGTGCTTCATCCCGAGAAGAAGACTATTTGTTA
TTAGCTGTGCGCAACTCTTCCCGTAACGAAGCACTTAAAGAGCTGGACCCCAACACGCGC
TCACCTCTTTCCCGAAAAAACAGTACCGCTTCGCATTCTTCCGCTTCCAGACTTTGTGAT
ATGACAAAAAGAGGCGAAAAGATTATCAGCGGATGTGATTACTGCGATTCTTCCGCCTCG
AAAGACTCCGGTATCCATTCAGAGATCGATTCGACTAGCGGTGCGTCTTATTCTGACGCG
AGCATAGGTCGTCGTTTACGATTCTCCACGAATGGGGTTCTTACAAATTTATTGCCGATT
CCAAACACTTCTAGAGTAAACGAAAACGATATTGCTAGATTTGAGTTGTCTGCTCCTCTA
AAAACACAAGATTTTCAAATCGTACCTGCGACGACGACATCTAGTCATATTAAGAATTTC
ACCGACATTCTGAATACAGAAACGGCAATTTGA
| Gene3D |
LRR_dom_sf (IPR032675) - T[1-261] 1.8E-46 |
| Pfam |
LRR_5 (IPR026906) - T[5-74] 0.038 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[41-64] 200.0 - T[65-89] 8.1 - T[111-134] 1.0 - T[136-158] 130.0 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[43-64] 5.356 - T[67-88] 7.72 - T[89-110] 4.824 - T[113-134] 8.12 - T[136-159] 5.332 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[89-145] 1.8E-7 |
| ProSiteProfiles |
GPCR_Rhodpsn_7TM (IPR017452) - T[336-624] 15.838 |
| PRINTS |
GPCR_Rhodpsn (IPR000276) - T[358-379] 8.4E-9 - T[410-432] 8.4E-9 - T[447-468] 8.4E-9 - T[544-567] 8.4E-9 - T[606-632] 8.4E-9 |
| Pfam |
GPCR_Rhodpsn (IPR000276) - T[360-737] 3.4E-11 |
| ProSiteProfiles |
IQ_motif_EF-hand-BS (IPR000048) - T[728-757] 6.723 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LGR6_HUMAN | 31.104 % | 135 | 3.49E-32 |
| LGR5_HUMAN | 30.345 % | 125 | 4.12E-29 |
| LGR4_HUMAN | 27.273 % | 110 | 2.1E-24 |