- Transcript 'Haaura.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S290.g04040.01.t
Possible name(s)
BRIP1; RTEL1; RTEL1-TNFRSF6B
Gene model
Location
S290 [27,571 / 32,425]
Amino acid sequence
Length: 1,091
>Haaura.CG.MTP2014.S290.g04040.01.p
MHTLHIRGIEVEFPFKPYDVQLDYMTKVIESLQTGNNAILESPTGTGKTLCLLCATLAWR
RSEIKSKTLSIQNQPSDKEPDYPFGWGQTDAVPGEEEQQIPSAPKVIYASRTHSQLTQVV
AELKRTDYAKDTKISILGSREQLCIHPEVSEQKSNTAMIHMCRNKVNKRICQFYNNVENV
RKSGVFTGEVLDIEELVNLGKKKNACPYYAQREQSKEADTGIIFSPYNYLLDRKARGSNN
LDVKDNILIFDEAHNLEKMCEESASFDLTSVDIAHCIEEMGDLLSAKCKLIETGTIPNGH
EAGQSSALHEFDQDELTLLKVLFLALEKHLDDIELSRADKCRTEKGRYMFEFLAQVNLNF
GTHEALLSVIEKVVSYLSTLSNSFQTRGTALQKFAEIVKVVFSMSDGQSNILPSSLCQSS
YVMEKMMDELSKFYRVHIQEESPKDSYKKSSTNTKSKRNKRTLSYWCFSPGYAMRDLIAC
GVRNLILTSGTLSPLASFTCELQVDFPITLQNTHVIDNHQIFVGVMTRGLSGKKLESTYK
SRNDSQLTTELGRTLTQIARTCPGGLLVFFPSYAAMDAYTTCWSNFSVDIMRELELVKPC
TSEPKNKHELKQAMEKYYSDVEKPSGGTFLAVCRGKVSEGLDFANDNGRAVVVIGLPFPP
SKDPKVRLKMQFLEDLRANGAKQIITGQEWYRLQALRAVNQAIGRVIRHRFDYGAVLLCD
HRYSQKENSSELPKWIHGRVNTFDNCQQALRRLKAFFCSIKDKEKIRMQTLQTYQPNCIQ
DNKTDTSDSFFKPTPPAKDQMFFGVKPDKRKDNEIFSQYFSKANKSSDSRKNSNLRFPKL
NEFDDHIPSTSNGASDSIQSTSGGSCSGCEITGKRKRDDVPESEGSVVIKNRKKKSKNFG
LLDALDRDSTVTECTAEEEPAVVSEESTQRLSSHMLAMDKRLDDERRGVLRKKIKIVSKS
TASSSCKEQKDKKLSSANSEVNLKSSCCDVIEVNESKLTSGSAKEYLDAIKSRFVESSYF
QFKRLTASYSKSKELDALVSGLADLFLEDDTHHVLFRCFVRFIKLEQKAKFDEFCFNLTG
KRCLQKSKSSK
Nucleotide sequence
Length: 3,273
>Haaura.CG.MTP2014.S290.g04040.01.t
ATGCACACTCTGCATATACGTGGTATCGAAGTGGAATTTCCGTTCAAACCTTACGATGTA
CAACTTGATTATATGACCAAAGTTATAGAATCATTGCAGACTGGTAACAACGCTATCCTC
GAATCACCTACAGGAACAGGCAAGACTCTTTGTCTGTTATGTGCCACGCTGGCATGGAGA
AGGTCAGAAATAAAATCCAAGACACTGAGCATACAAAACCAACCATCCGACAAAGAACCC
GATTATCCGTTTGGATGGGGCCAAACAGATGCTGTTCCAGGGGAGGAAGAACAGCAAATT
CCAAGCGCACCGAAAGTTATTTATGCATCTCGAACTCATTCACAGCTGACCCAAGTAGTC
GCTGAACTGAAACGTACCGATTACGCAAAAGATACGAAGATAAGCATCTTGGGTTCTCGG
GAACAGCTGTGTATTCATCCTGAAGTTTCAGAGCAGAAGAGCAATACGGCCATGATACAT
ATGTGTAGAAACAAAGTGAACAAACGCATCTGTCAATTTTATAATAATGTTGAAAATGTG
AGGAAATCTGGAGTGTTCACTGGAGAGGTTCTAGATATCGAAGAGCTGGTGAATCTGGGA
AAGAAGAAGAATGCGTGTCCATATTATGCACAAAGAGAGCAGTCAAAGGAGGCTGATACC
GGAATCATATTCTCCCCATACAATTATCTCCTCGATCGAAAGGCAAGAGGATCTAACAAT
CTTGATGTGAAAGATAACATACTGATTTTTGACGAAGCCCACAATCTCGAGAAGATGTGT
GAAGAATCTGCTTCGTTTGATCTGACGTCTGTTGATATTGCTCACTGCATTGAAGAAATG
GGCGATTTGCTTTCGGCAAAATGCAAATTGATTGAAACTGGAACTATTCCAAATGGTCAT
GAAGCAGGTCAATCCTCTGCACTTCATGAATTTGATCAAGATGAACTAACTCTCCTCAAA
GTACTCTTTCTGGCTCTGGAAAAACATCTAGATGATATCGAGCTCTCCAGGGCTGATAAA
TGCAGGACTGAGAAAGGAAGGTATATGTTTGAGTTCCTGGCTCAAGTTAATTTGAATTTC
GGTACCCACGAAGCTCTTCTTAGCGTGATTGAAAAAGTGGTGTCGTACCTGTCCACTCTG
AGCAATTCATTCCAAACCCGCGGCACAGCTTTGCAAAAGTTTGCTGAAATTGTCAAGGTC
GTGTTCAGCATGTCGGACGGGCAGTCGAACATCTTGCCATCTTCTCTCTGTCAGTCCAGC
TATGTAATGGAGAAAATGATGGACGAATTGTCCAAGTTTTATCGCGTCCACATTCAAGAA
GAGTCTCCCAAAGATTCATATAAGAAGTCGAGCACGAATACAAAGTCTAAAAGAAACAAA
CGTACTCTCAGCTATTGGTGTTTTAGCCCTGGTTATGCAATGCGTGATCTTATTGCATGT
GGGGTTAGAAACCTAATACTAACCAGCGGCACGCTATCACCTCTAGCATCGTTCACCTGT
GAATTACAAGTCGATTTTCCCATAACGCTACAGAACACGCATGTGATAGACAATCATCAA
ATATTTGTTGGTGTTATGACAAGAGGTTTGAGTGGGAAAAAACTTGAATCTACATACAAG
TCAAGAAATGATTCCCAGCTGACTACCGAACTTGGTCGCACACTGACCCAGATTGCCAGA
ACCTGTCCCGGTGGTCTGCTTGTCTTTTTTCCTTCTTATGCTGCGATGGATGCTTACACT
ACTTGCTGGAGCAATTTTTCCGTTGATATTATGAGAGAATTAGAATTGGTCAAGCCTTGC
ACCTCAGAACCTAAAAATAAACATGAGTTGAAGCAAGCAATGGAAAAGTACTACAGCGAT
GTCGAAAAGCCTTCAGGCGGCACTTTCTTAGCTGTCTGTCGTGGCAAAGTTTCTGAAGGA
CTTGATTTTGCCAATGATAATGGAAGAGCGGTCGTAGTAATTGGCTTACCGTTCCCTCCT
TCGAAAGACCCAAAAGTTCGATTAAAGATGCAGTTCCTCGAGGATCTTCGAGCAAATGGA
GCAAAACAAATAATAACTGGACAAGAATGGTATCGTCTTCAAGCGTTGAGAGCTGTCAAT
CAGGCAATAGGACGTGTAATTCGTCATAGATTTGACTATGGAGCGGTCCTTCTGTGCGAT
CACAGGTACAGTCAGAAGGAAAATTCTTCCGAACTCCCGAAATGGATTCATGGTCGCGTC
AACACGTTTGATAATTGTCAGCAAGCACTGAGAAGACTGAAAGCTTTTTTCTGTTCCATA
AAAGACAAAGAAAAAATCAGAATGCAAACACTGCAAACGTATCAACCAAATTGTATTCAA
GATAACAAAACAGATACATCGGATTCCTTTTTTAAACCCACCCCACCAGCAAAAGATCAA
ATGTTTTTTGGTGTCAAACCTGATAAAAGGAAAGACAACGAAATCTTTAGTCAATATTTT
TCCAAAGCAAACAAAAGTTCTGATAGCCGGAAAAACAGTAACTTGAGATTTCCAAAACTT
AACGAATTTGACGATCACATACCATCAACCTCCAACGGAGCTTCAGATTCCATTCAGTCA
ACTTCTGGTGGATCTTGTTCAGGATGTGAAATTACTGGAAAAAGGAAGAGGGATGATGTT
CCTGAAAGTGAGGGTTCAGTAGTCATTAAGAACCGAAAGAAAAAATCAAAGAATTTTGGT
TTGCTGGATGCTCTTGATAGGGATTCGACGGTCACCGAGTGCACTGCTGAAGAAGAACCG
GCTGTGGTATCTGAAGAATCTACGCAGAGGTTATCCAGCCATATGTTGGCCATGGACAAG
AGACTCGATGATGAGAGAAGAGGCGTGCTGAGAAAGAAAATTAAAATCGTTTCAAAAAGT
ACCGCATCATCATCCTGTAAAGAGCAGAAGGACAAGAAGCTTAGTAGTGCAAATTCAGAA
GTGAACTTGAAATCTTCCTGCTGTGATGTCATTGAGGTTAATGAAAGTAAACTGACTTCA
GGATCTGCAAAAGAATATCTTGATGCCATCAAATCACGCTTCGTGGAATCCTCTTATTTC
CAGTTTAAACGCTTAACTGCATCTTACAGTAAATCCAAAGAACTTGATGCTCTAGTGTCA
GGACTTGCTGATTTATTTCTGGAGGATGATACACATCATGTTTTGTTTCGTTGCTTCGTA
AGGTTCATAAAGCTCGAACAGAAAGCAAAGTTTGATGAATTTTGTTTCAACTTGACTGGA
AAACGATGTCTACAGAAGAGCAAGTCTTCTAAA
| Hamap |
RTEL1 (IPR030845) - T[1-1081] 12.766 |
| ProSiteProfiles |
Helic_SF1/SF2_ATP-bd_DinG/Rad3 (IPR014013) - T[7-306] 29.673 |
| SMART |
Helicase-like_DEXD_c2 (IPR006554) - T[9-295] 1.3E-63 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[10-66] 1.45E-12 - T[28-62] 2.41E-11 - T[102-124] 2.41E-11 - T[105-143] 1.45E-12 - T[202-279] 2.41E-11 - T[215-300] 1.45E-12 - T[481-495] 2.41E-11 - T[529-718] 2.41E-11 |
| TIGRFAM |
Rad3/Chl1-like (IPR013020) - T[11-751] 7.1E-144 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[13-322] 5.4E-5 |
| Pfam |
DEAD_2 (IPR010614) - T[108-272] 6.8E-53 |
| Pfam |
ATP-dep_Helicase_C (IPR006555) - T[556-737] 5.8E-51 |
| SMART |
ATP-dep_Helicase_C (IPR006555) - T[573-725] 1.5E-50 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX12_HUMAN | 25.035 % | 223 | 3.47E-60 |
| FANCJ_HUMAN | 31.818 % | 342 | 1.69E-99 |
| RTEL1_HUMAN | 37.274 % | 714 | 0 |