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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.L141.53.v1...'
  2. Transcript 'KH2012:KH.L170.28.v4...'
  3. Transcript 'KH2012:KH.C5.392.v2....'
  4. Transcript 'Phfumi.CG.MTP2014.S8...'
  5. Transcript 'Haaura.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S290.g04040.01.t

Possible name(s)

BRIP1; RTEL1; RTEL1-TNFRSF6B

Location

S290 [27,571 / 32,425]

Sequences

Amino acid sequence

Length: 1,091

>Haaura.CG.MTP2014.S290.g04040.01.p
MHTLHIRGIEVEFPFKPYDVQLDYMTKVIESLQTGNNAILESPTGTGKTLCLLCATLAWR
RSEIKSKTLSIQNQPSDKEPDYPFGWGQTDAVPGEEEQQIPSAPKVIYASRTHSQLTQVV
AELKRTDYAKDTKISILGSREQLCIHPEVSEQKSNTAMIHMCRNKVNKRICQFYNNVENV
RKSGVFTGEVLDIEELVNLGKKKNACPYYAQREQSKEADTGIIFSPYNYLLDRKARGSNN
LDVKDNILIFDEAHNLEKMCEESASFDLTSVDIAHCIEEMGDLLSAKCKLIETGTIPNGH
EAGQSSALHEFDQDELTLLKVLFLALEKHLDDIELSRADKCRTEKGRYMFEFLAQVNLNF
GTHEALLSVIEKVVSYLSTLSNSFQTRGTALQKFAEIVKVVFSMSDGQSNILPSSLCQSS
YVMEKMMDELSKFYRVHIQEESPKDSYKKSSTNTKSKRNKRTLSYWCFSPGYAMRDLIAC
GVRNLILTSGTLSPLASFTCELQVDFPITLQNTHVIDNHQIFVGVMTRGLSGKKLESTYK
SRNDSQLTTELGRTLTQIARTCPGGLLVFFPSYAAMDAYTTCWSNFSVDIMRELELVKPC
TSEPKNKHELKQAMEKYYSDVEKPSGGTFLAVCRGKVSEGLDFANDNGRAVVVIGLPFPP
SKDPKVRLKMQFLEDLRANGAKQIITGQEWYRLQALRAVNQAIGRVIRHRFDYGAVLLCD
HRYSQKENSSELPKWIHGRVNTFDNCQQALRRLKAFFCSIKDKEKIRMQTLQTYQPNCIQ
DNKTDTSDSFFKPTPPAKDQMFFGVKPDKRKDNEIFSQYFSKANKSSDSRKNSNLRFPKL
NEFDDHIPSTSNGASDSIQSTSGGSCSGCEITGKRKRDDVPESEGSVVIKNRKKKSKNFG
LLDALDRDSTVTECTAEEEPAVVSEESTQRLSSHMLAMDKRLDDERRGVLRKKIKIVSKS
TASSSCKEQKDKKLSSANSEVNLKSSCCDVIEVNESKLTSGSAKEYLDAIKSRFVESSYF
QFKRLTASYSKSKELDALVSGLADLFLEDDTHHVLFRCFVRFIKLEQKAKFDEFCFNLTG
KRCLQKSKSSK

Nucleotide sequence

Length: 3,273

>Haaura.CG.MTP2014.S290.g04040.01.t
ATGCACACTCTGCATATACGTGGTATCGAAGTGGAATTTCCGTTCAAACCTTACGATGTA
CAACTTGATTATATGACCAAAGTTATAGAATCATTGCAGACTGGTAACAACGCTATCCTC
GAATCACCTACAGGAACAGGCAAGACTCTTTGTCTGTTATGTGCCACGCTGGCATGGAGA
AGGTCAGAAATAAAATCCAAGACACTGAGCATACAAAACCAACCATCCGACAAAGAACCC
GATTATCCGTTTGGATGGGGCCAAACAGATGCTGTTCCAGGGGAGGAAGAACAGCAAATT
CCAAGCGCACCGAAAGTTATTTATGCATCTCGAACTCATTCACAGCTGACCCAAGTAGTC
GCTGAACTGAAACGTACCGATTACGCAAAAGATACGAAGATAAGCATCTTGGGTTCTCGG
GAACAGCTGTGTATTCATCCTGAAGTTTCAGAGCAGAAGAGCAATACGGCCATGATACAT
ATGTGTAGAAACAAAGTGAACAAACGCATCTGTCAATTTTATAATAATGTTGAAAATGTG
AGGAAATCTGGAGTGTTCACTGGAGAGGTTCTAGATATCGAAGAGCTGGTGAATCTGGGA
AAGAAGAAGAATGCGTGTCCATATTATGCACAAAGAGAGCAGTCAAAGGAGGCTGATACC
GGAATCATATTCTCCCCATACAATTATCTCCTCGATCGAAAGGCAAGAGGATCTAACAAT
CTTGATGTGAAAGATAACATACTGATTTTTGACGAAGCCCACAATCTCGAGAAGATGTGT
GAAGAATCTGCTTCGTTTGATCTGACGTCTGTTGATATTGCTCACTGCATTGAAGAAATG
GGCGATTTGCTTTCGGCAAAATGCAAATTGATTGAAACTGGAACTATTCCAAATGGTCAT
GAAGCAGGTCAATCCTCTGCACTTCATGAATTTGATCAAGATGAACTAACTCTCCTCAAA
GTACTCTTTCTGGCTCTGGAAAAACATCTAGATGATATCGAGCTCTCCAGGGCTGATAAA
TGCAGGACTGAGAAAGGAAGGTATATGTTTGAGTTCCTGGCTCAAGTTAATTTGAATTTC
GGTACCCACGAAGCTCTTCTTAGCGTGATTGAAAAAGTGGTGTCGTACCTGTCCACTCTG
AGCAATTCATTCCAAACCCGCGGCACAGCTTTGCAAAAGTTTGCTGAAATTGTCAAGGTC
GTGTTCAGCATGTCGGACGGGCAGTCGAACATCTTGCCATCTTCTCTCTGTCAGTCCAGC
TATGTAATGGAGAAAATGATGGACGAATTGTCCAAGTTTTATCGCGTCCACATTCAAGAA
GAGTCTCCCAAAGATTCATATAAGAAGTCGAGCACGAATACAAAGTCTAAAAGAAACAAA
CGTACTCTCAGCTATTGGTGTTTTAGCCCTGGTTATGCAATGCGTGATCTTATTGCATGT
GGGGTTAGAAACCTAATACTAACCAGCGGCACGCTATCACCTCTAGCATCGTTCACCTGT
GAATTACAAGTCGATTTTCCCATAACGCTACAGAACACGCATGTGATAGACAATCATCAA
ATATTTGTTGGTGTTATGACAAGAGGTTTGAGTGGGAAAAAACTTGAATCTACATACAAG
TCAAGAAATGATTCCCAGCTGACTACCGAACTTGGTCGCACACTGACCCAGATTGCCAGA
ACCTGTCCCGGTGGTCTGCTTGTCTTTTTTCCTTCTTATGCTGCGATGGATGCTTACACT
ACTTGCTGGAGCAATTTTTCCGTTGATATTATGAGAGAATTAGAATTGGTCAAGCCTTGC
ACCTCAGAACCTAAAAATAAACATGAGTTGAAGCAAGCAATGGAAAAGTACTACAGCGAT
GTCGAAAAGCCTTCAGGCGGCACTTTCTTAGCTGTCTGTCGTGGCAAAGTTTCTGAAGGA
CTTGATTTTGCCAATGATAATGGAAGAGCGGTCGTAGTAATTGGCTTACCGTTCCCTCCT
TCGAAAGACCCAAAAGTTCGATTAAAGATGCAGTTCCTCGAGGATCTTCGAGCAAATGGA
GCAAAACAAATAATAACTGGACAAGAATGGTATCGTCTTCAAGCGTTGAGAGCTGTCAAT
CAGGCAATAGGACGTGTAATTCGTCATAGATTTGACTATGGAGCGGTCCTTCTGTGCGAT
CACAGGTACAGTCAGAAGGAAAATTCTTCCGAACTCCCGAAATGGATTCATGGTCGCGTC
AACACGTTTGATAATTGTCAGCAAGCACTGAGAAGACTGAAAGCTTTTTTCTGTTCCATA
AAAGACAAAGAAAAAATCAGAATGCAAACACTGCAAACGTATCAACCAAATTGTATTCAA
GATAACAAAACAGATACATCGGATTCCTTTTTTAAACCCACCCCACCAGCAAAAGATCAA
ATGTTTTTTGGTGTCAAACCTGATAAAAGGAAAGACAACGAAATCTTTAGTCAATATTTT
TCCAAAGCAAACAAAAGTTCTGATAGCCGGAAAAACAGTAACTTGAGATTTCCAAAACTT
AACGAATTTGACGATCACATACCATCAACCTCCAACGGAGCTTCAGATTCCATTCAGTCA
ACTTCTGGTGGATCTTGTTCAGGATGTGAAATTACTGGAAAAAGGAAGAGGGATGATGTT
CCTGAAAGTGAGGGTTCAGTAGTCATTAAGAACCGAAAGAAAAAATCAAAGAATTTTGGT
TTGCTGGATGCTCTTGATAGGGATTCGACGGTCACCGAGTGCACTGCTGAAGAAGAACCG
GCTGTGGTATCTGAAGAATCTACGCAGAGGTTATCCAGCCATATGTTGGCCATGGACAAG
AGACTCGATGATGAGAGAAGAGGCGTGCTGAGAAAGAAAATTAAAATCGTTTCAAAAAGT
ACCGCATCATCATCCTGTAAAGAGCAGAAGGACAAGAAGCTTAGTAGTGCAAATTCAGAA
GTGAACTTGAAATCTTCCTGCTGTGATGTCATTGAGGTTAATGAAAGTAAACTGACTTCA
GGATCTGCAAAAGAATATCTTGATGCCATCAAATCACGCTTCGTGGAATCCTCTTATTTC
CAGTTTAAACGCTTAACTGCATCTTACAGTAAATCCAAAGAACTTGATGCTCTAGTGTCA
GGACTTGCTGATTTATTTCTGGAGGATGATACACATCATGTTTTGTTTCGTTGCTTCGTA
AGGTTCATAAAGCTCGAACAGAAAGCAAAGTTTGATGAATTTTGTTTCAACTTGACTGGA
AAACGATGTCTACAGAAGAGCAAGTCTTCTAAA

InterProScan

Hamap
RTEL1 (IPR030845) - T[1-1081] 12.766
ProSiteProfiles
Helic_SF1/SF2_ATP-bd_DinG/Rad3 (IPR014013) - T[7-306] 29.673
SMART
Helicase-like_DEXD_c2 (IPR006554) - T[9-295] 1.3E-63
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[10-66] 1.45E-12 - T[28-62] 2.41E-11 - T[102-124] 2.41E-11 - T[105-143] 1.45E-12 - T[202-279] 2.41E-11 - T[215-300] 1.45E-12 - T[481-495] 2.41E-11 - T[529-718] 2.41E-11
TIGRFAM
Rad3/Chl1-like (IPR013020) - T[11-751] 7.1E-144
SMART
Helicase_ATP-bd (IPR014001) - T[13-322] 5.4E-5
Pfam
DEAD_2 (IPR010614) - T[108-272] 6.8E-53
Pfam
ATP-dep_Helicase_C (IPR006555) - T[556-737] 5.8E-51
SMART
ATP-dep_Helicase_C (IPR006555) - T[573-725] 1.5E-50

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
DDX12_HUMAN 25.035 % 223 3.47E-60
FANCJ_HUMAN 31.818 % 342 1.69E-99
RTEL1_HUMAN 37.274 % 714 0