- Transcript 'Haaura.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S291.g04058.01.t
Possible name(s)
HNRNPDL; RBM23; RBM39
Gene model
Location
S291 [47,461 / 48,622]
Amino acid sequence
Length: 387
>Haaura.CG.MTP2014.S291.g04058.01.p
MADDLDVEAMLEAPFKKDQATENGESKSRSKNNRGKSGKDRKRSRSRKRSRSRKESKSRK
HRSRSRSRDKRRHSDRTRRSRSRSRERRRRRSRSKERRHRSSPIKKAPTPPIVPPEPKER
SPSPADRDARTVFCMQLSQRIRPRDLEEFFSSVGTVRDVKLIADKHSKRSKGIAYVEFKD
MESVPLSLGLSGQKVLGVPIIVQPSQAEKNRVQQTATQSSLQKGNFGPMKLYVGSLHQNI
TEDMLKGIFSPFGKIEQVQLVKDVSTNISRGYGFITFTEAECAKRALEQLNGFEIAGKPM
KVSNVTDKADQQAAMALASGQSGPSFLDNDAIERTGIDLGTTGRLQLMAKLAEGTGLLVP
SITQQALSMGQAMGLGLRGSINVQSSE
Nucleotide sequence
Length: 1,161
>Haaura.CG.MTP2014.S291.g04058.01.t
ATGGCCGACGATCTTGACGTGGAGGCTATGTTAGAAGCTCCGTTCAAAAAGGACCAAGCG
ACCGAAAATGGCGAATCTAAATCGAGAAGTAAAAACAATAGGGGTAAGAGCGGCAAAGAT
AGAAAACGCAGTAGATCCCGTAAGCGAAGCAGGTCCCGAAAAGAAAGTAAGTCCCGTAAA
CACCGATCTCGTTCAAGAAGCAGAGACAAAAGAAGACATTCCGATCGTACCAGACGTTCT
AGAAGTCGATCGCGTGAGAGAAGGCGAAGAAGAAGTCGTTCTAAAGAAAGACGGCATCGT
TCGAGTCCCATCAAAAAAGCACCGACTCCTCCGATTGTGCCGCCAGAGCCGAAGGAACGC
TCGCCCAGCCCCGCAGATCGCGATGCTCGTACAGTGTTTTGTATGCAACTGTCTCAACGC
ATCAGACCGCGAGATTTGGAAGAATTTTTTTCTTCTGTTGGCACCGTACGAGATGTCAAA
TTAATCGCCGACAAACATTCAAAGAGATCGAAGGGAATAGCCTACGTCGAATTCAAAGAT
ATGGAATCAGTGCCTTTGTCACTCGGGCTGAGCGGACAGAAAGTATTGGGCGTTCCCATA
ATAGTACAGCCATCGCAAGCTGAAAAGAACAGGGTTCAGCAAACCGCTACTCAAAGCAGC
TTGCAGAAGGGTAATTTCGGACCTATGAAACTGTACGTTGGATCGCTGCATCAAAACATC
ACTGAAGACATGCTCAAAGGAATATTTTCCCCGTTTGGTAAAATAGAACAAGTACAGTTG
GTAAAGGACGTCTCAACCAACATCTCCCGTGGTTACGGTTTCATCACGTTTACCGAAGCC
GAGTGCGCTAAACGTGCACTGGAACAATTGAATGGATTTGAAATTGCCGGAAAACCTATG
AAGGTCTCAAACGTTACGGATAAAGCTGACCAACAAGCCGCTATGGCACTCGCCTCTGGA
CAATCAGGGCCCTCATTTTTGGACAATGATGCCATTGAGCGAACAGGAATCGACCTTGGC
ACTACCGGCAGACTTCAATTAATGGCAAAACTTGCCGAAGGCACCGGTTTGCTGGTCCCA
TCCATAACCCAACAAGCGCTATCGATGGGTCAGGCCATGGGCTTAGGATTACGTGGTTCC
ATAAACGTACAGAGCAGCGAA
| TIGRFAM |
RBM39_SF (IPR006509) - T[19-372] 3.2E-112 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[63-220] 1.5E-24 - T[228-321] 6.3E-26 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[65-205] 2.69E-21 - T[225-326] 7.93E-29 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[130-207] 14.419 - T[229-307] 19.741 |
| SMART |
RRM_dom (IPR000504) - T[131-203] 4.2E-14 - T[230-303] 1.4E-26 |
| Pfam |
RRM_dom (IPR000504) - T[132-194] 2.7E-10 - T[231-300] 8.5E-22 |
| Pfam |
RBM39_linker (IPR029123) - T[330-374] 2.5E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HNRDL_HUMAN | 33.951 % | 86.3 | 1.57E-18 |
| RBM39_HUMAN | 54 % | 372 | 1.11E-125 |
| RBM23_HUMAN | 49.749 % | 330 | 2.57E-110 |