- Clone 'AHC0AAA202YJ07' >
- Transcript 'Phmamm.CG.MTP2014.S3...' >
- Transcript 'Cisavi.CG.ENS81.R49....' >
- Transcript 'Haaura.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S319.g04269.01.t
Possible name(s)
COPA; COPB2; PAFAH1B1
Gene model
Location
S319 [49,167 / 51,924]
Amino acid sequence
Length: 919
>Haaura.CG.MTP2014.S319.g04269.01.p
MPLRLDIKRKLSARSDRVKCVDLHPTEPWMLVSLYNGNVHIWNTESQQLVKSFEICDLPV
RAARFVPRKNWVVSGSDDMQIRVFNYNTLERSHMFEAHTDYIRSIAIHPTQPYLLTSSDD
MLIKLWDWDKKWCCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT
LEGHDKGVNCVDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVVCVSFHPE
LPIIMTGSEDGTVKLWHANTYRLETTLNYGLERVWCISALKGSNNIALGYDEGSILIKLG
REEPAMSMDSSGKIIWAKHSEIQQANLKALSEVDAKDGERLQLAIKDMGSCEVYPQNLRH
NSNGRFVVVCGDGEYIIYTAMALRNKAFGSALEFVWANDSSEYAVRESGTTIKIFKNFKE
RQTFKPDFGCEAIYGGYLLGVKTNQGLAFYDWDSLELIRRIENNPKYIFWSDNGDLVSIA
SEDSFFILRYDQNKLAEAQDNKDLVTEDGIENSFDVLGEIEETVKTGVWIGDCFIYTNSV
NRLNYYVGGEIVTIAHLDRILYLLGYIPAHNRLYLGDKELNVVSYSLLLSVLEYQTAVMR
KDFETADKVLPSIPKEQRTRVAHFLEKQNFKVQAMAVTCDPEHKFELALGLGDMKVAYGL
AKEAESEQKWKQLAELATSKCEFSLAQECLHNAKDFGGLLLLATSAGNAKMVGSLAEGAE
KGGKNNVAFLSYFVTGQLTKCLDLLVNTMRFPEAAFFARTYQPSEVSRIVQLWKTNLALT
NKKAADSLADPKQYENLFPMMSESLVAQKYLQATEKIRPASHYLQTPNNDERNVLEECDG
FQEPKTEVVEENEVVPQNVVPLIKPEEEKKPQEAIEDFVGQISEEEQEQDLDLDIENLVL
DENIDTSDIDLDAELLED*
Nucleotide sequence
Length: 2,757
>Haaura.CG.MTP2014.S319.g04269.01.t
ATGCCACTACGTCTTGATATCAAAAGAAAGTTGAGTGCGCGTTCCGACCGCGTAAAATGC
GTCGATCTTCATCCGACCGAACCGTGGATGCTCGTCTCCCTTTACAATGGTAACGTTCAT
ATATGGAATACCGAATCGCAGCAATTGGTGAAATCTTTTGAGATATGTGATCTCCCTGTT
CGAGCTGCACGATTTGTACCAAGGAAAAATTGGGTCGTCAGTGGCTCAGACGACATGCAG
ATACGCGTTTTTAACTATAACACCCTAGAACGCTCTCACATGTTCGAGGCACACACCGAC
TACATAAGATCGATAGCGATACATCCTACACAGCCATATTTGTTGACAAGTAGTGACGAC
ATGCTGATCAAACTGTGGGATTGGGATAAAAAATGGTGTTGTTCTCAAGTTTTCGAAGGT
CACACGCATTATGTTATGCAGATCGTCATAAACCCTAAAGACAACAATCAATTTGCCAGT
GCTTCTCTTGATAGGACGATCAAAGTTTGGCAGCTTGGGTCGTCATCGCCCAACTTCACT
CTGGAAGGTCATGACAAGGGTGTCAACTGCGTTGATTACTACAGCGGTGGCGACAAGCCG
TACCTTATATCTGGCGCCGATGACAGGCTGGTCAAGATATGGGACTACCAGAACAAAACC
TGTGTCCAAACTCTGGAAGGCCACGCACAAAATGTGGTGTGTGTCAGTTTCCACCCAGAG
CTTCCTATTATAATGACCGGTTCAGAAGATGGTACTGTCAAACTGTGGCATGCCAACACT
TACAGGCTTGAGACGACGTTAAATTACGGCTTAGAAAGGGTCTGGTGCATTTCTGCGCTG
AAAGGCTCGAACAATATCGCTCTTGGTTACGATGAAGGAAGCATATTGATCAAACTAGGC
CGAGAAGAACCTGCCATGTCCATGGACAGCAGCGGTAAAATCATTTGGGCGAAGCACTCT
GAAATCCAGCAAGCGAACCTGAAAGCCCTCTCGGAAGTCGATGCTAAAGATGGAGAACGT
TTGCAATTGGCTATAAAAGACATGGGTAGTTGTGAAGTATATCCTCAGAACCTCAGGCAC
AATTCAAATGGACGTTTTGTGGTTGTTTGTGGTGATGGCGAATATATCATTTACACTGCG
ATGGCACTGAGAAACAAAGCTTTTGGTTCGGCATTGGAATTCGTTTGGGCAAACGATTCA
TCAGAGTATGCTGTGCGTGAAAGCGGCACCACCATTAAGATCTTCAAGAACTTCAAAGAA
CGGCAGACGTTTAAACCAGACTTCGGCTGTGAAGCTATCTACGGAGGGTATCTTTTAGGG
GTCAAAACTAACCAAGGACTCGCTTTTTACGACTGGGATAGCCTGGAACTTATTCGCAGG
ATTGAAAACAACCCGAAATATATCTTCTGGTCGGATAACGGAGATTTGGTGTCTATCGCC
AGTGAAGATTCATTCTTTATTCTGAGGTATGACCAAAACAAGCTCGCTGAAGCTCAGGAT
AATAAAGATCTTGTTACAGAAGACGGCATAGAAAATTCTTTCGATGTTCTCGGCGAAATC
GAAGAGACTGTCAAGACCGGCGTTTGGATCGGCGACTGTTTCATTTACACCAATTCAGTT
AACAGATTGAATTACTACGTCGGAGGTGAAATAGTCACTATAGCTCATCTTGATAGAATC
CTTTATCTACTCGGTTACATCCCTGCTCACAATCGTTTGTATTTGGGAGACAAAGAATTA
AACGTAGTCAGTTATTCTTTGCTATTGTCGGTGCTTGAATATCAAACTGCCGTGATGAGA
AAGGATTTCGAAACCGCAGACAAAGTCTTGCCATCGATTCCGAAAGAACAGCGCACTCGT
GTGGCTCATTTTCTGGAAAAACAAAACTTCAAAGTTCAAGCCATGGCTGTGACCTGTGAT
CCTGAGCACAAATTCGAGCTAGCCTTGGGTCTCGGAGACATGAAAGTAGCCTACGGTCTT
GCGAAAGAAGCAGAGTCTGAACAGAAATGGAAACAGTTGGCAGAACTAGCTACGTCCAAG
TGCGAGTTCTCTCTGGCTCAAGAATGTTTACATAATGCCAAAGATTTTGGCGGATTGCTC
TTGCTAGCCACCTCGGCCGGAAATGCCAAAATGGTTGGATCGCTTGCCGAAGGGGCTGAG
AAAGGCGGTAAAAACAACGTTGCCTTTTTGTCATACTTTGTGACGGGCCAACTGACAAAA
TGTCTGGACCTTTTAGTAAACACTATGAGATTTCCAGAAGCTGCCTTTTTTGCTAGAACT
TACCAACCAAGTGAGGTTTCAAGAATCGTACAGTTATGGAAAACCAACCTGGCGCTAACT
AACAAAAAGGCAGCTGATTCGCTTGCTGATCCTAAGCAATACGAAAACCTGTTCCCAATG
ATGAGCGAGTCTCTCGTAGCGCAAAAGTACTTGCAAGCAACAGAGAAAATTCGTCCCGCC
AGCCATTACTTACAGACGCCTAACAACGACGAGAGAAATGTTCTGGAAGAGTGTGACGGT
TTCCAGGAGCCAAAGACTGAAGTTGTAGAGGAAAATGAAGTGGTTCCACAGAACGTCGTT
CCTTTAATAAAACCGGAAGAAGAGAAAAAACCCCAAGAGGCAATAGAAGATTTTGTTGGT
CAGATTTCTGAGGAGGAGCAGGAGCAAGATTTGGACTTAGACATAGAAAATTTAGTGCTG
GATGAAAACATTGACACTTCAGACATAGATCTAGATGCTGAATTGCTGGAAGATTGA
| PIRSF |
COPB2 (IPR016453) - T[2-890] 0.0 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[3-296] 2.5E-81 - T[232-309] 1.52E-13 - T[344-378] 1.52E-13 - T[417-493] 1.52E-13 - T[522-563] 1.52E-13 |
| SMART |
WD40_repeat (IPR001680) - T[4-43] 0.083 - T[46-85] 0.0028 - T[88-127] 1.7E-8 - T[131-171] 3.8E-8 - T[174-215] 1.0E-7 - T[218-257] 4.2E-10 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[11-300] 6.1E-111 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[11-266] 52.176 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[11-52] 9.406 - T[95-127] 13.783 - T[138-180] 12.447 - T[181-224] 13.215 - T[225-266] 15.956 |
| Pfam |
WD40_repeat (IPR001680) - T[15-43] 0.26 - T[60-85] 0.068 - T[92-127] 2.7E-5 - T[132-170] 0.0047 - T[177-215] 2.3E-6 - T[220-256] 1.2E-8 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[114-128] 6.8E-6 - T[158-172] 6.8E-6 - T[202-216] 6.8E-6 |
| Pfam |
Coatomer_WD-assoc_reg (IPR006692) - T[319-763] 1.1E-168 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COPA_HUMAN | 27.083 % | 249 | 7.3E-69 |
| COPB2_HUMAN | 72.579 % | 1441 | 0 |
| LIS1_HUMAN | 26.296 % | 117 | 4.73E-28 |