Aniseed - Transcript Card

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S344.g04445.01.t

Possible name(s)

ARFGEF1; ARFGEF2; FBXO8

Gene model

Haaura.CG.MTP2014.S344.g04445

Location

S344 [18,559 / 21,977]

Sequences

Amino acid sequence

Length: 361

>Haaura.CG.MTP2014.S344.g04445.01.p
MGQLVARRLLRADNGNRNSSYRQRRRHASNPTRRQTLWQILGFIRGASGHGQFPGQSPSR
TARRSSSDLDNFPDLHLLPPEIGIEVLKNLNATDLCLASCVWTDLANDEMLWEGLCKTSW
GYCSAYREWKLSQKSFKKLFLLLDEGSLTFDCEPKWGMKYLHDNNVLYDDAKEIALFIHR
TNQLCWQKVRVYLKTRSDVLEELIMLQNYTNQFLPNALRKFFQAVDSPTSRGEYLNLLID
KFSLRFCSDNPHLTLTPDIVNILCYSLILLSVDLTSPHVKNKMSKREFIRNICSALGDQN
RGRIEQEPVANDLYLRGQRLPPEEVARRRAIAMVDKDFAGHLYDNIYLVGHIAPRRWDEG
*

Nucleotide sequence

Length: 1,083

>Haaura.CG.MTP2014.S344.g04445.01.t
ATGGGGCAGCTAGTCGCGAGGCGTCTGCTGCGAGCAGATAACGGAAATCGGAATTCAAGC
TATCGCCAGCGCAGAAGACATGCTTCGAATCCAACTAGAAGACAAACCTTATGGCAAATA
TTAGGCTTTATCAGAGGAGCGTCTGGTCATGGCCAGTTTCCTGGACAAAGTCCGAGCAGA
ACAGCAAGGAGGTCAAGTTCAGATTTGGATAATTTCCCAGATTTACATTTACTTCCTCCA
GAAATTGGGATTGAGGTTTTGAAGAATCTGAATGCGACAGATCTCTGCCTTGCTTCGTGT
GTGTGGACCGACCTAGCCAATGATGAAATGCTTTGGGAAGGGTTATGTAAAACTTCATGG
GGATACTGCAGTGCTTACCGAGAATGGAAATTGTCACAAAAGTCATTCAAAAAGCTTTTC
CTCCTTCTGGACGAAGGGAGCCTTACATTCGACTGTGAACCAAAATGGGGAATGAAATAT
CTGCATGACAATAATGTGCTCTATGATGACGCCAAGGAAATCGCATTATTCATACACCGT
ACGAATCAGTTGTGTTGGCAGAAAGTTCGCGTTTATTTAAAGACACGGAGCGACGTCTTG
GAAGAATTGATTATGCTTCAGAATTACACGAATCAATTCCTGCCCAATGCCTTGAGGAAA
TTTTTTCAAGCTGTAGATTCTCCAACGTCTAGAGGAGAGTATCTAAATTTGCTCATAGAT
AAGTTTTCTCTAAGATTCTGTAGTGACAATCCTCATCTCACCCTTACACCAGATATTGTG
AACATTCTTTGCTACTCTCTCATCCTGCTCTCCGTCGACCTGACCAGCCCGCACGTAAAA
AACAAAATGTCCAAGCGTGAGTTCATTAGAAATATATGCTCTGCCTTGGGAGACCAGAAC
AGAGGCAGAATTGAACAGGAACCAGTGGCGAACGACCTCTATTTACGAGGACAGCGTCTG
CCGCCAGAAGAGGTAGCCCGCAGAAGAGCCATAGCTATGGTGGATAAAGACTTTGCCGGT
CACTTATATGACAACATCTATTTGGTGGGACATATCGCGCCGCGAAGGTGGGACGAGGGG
TGA

InterProScan

SUPERFAMILY	F-box-like_dom_sf (IPR036047) - T[65-140] 8.24E-13
ProSiteProfiles	Sec7_dom (IPR000904) - T[132-349] 21.377
SMART	Sec7_dom (IPR000904) - T[136-309] 2.6E-23
SUPERFAMILY	Sec7_dom_sf (IPR035999) - T[142-302] 1.15E-35
Pfam	Sec7_dom (IPR000904) - T[143-307] 9.2E-25
Gene3D	Sec7_C_sf (IPR023394) - T[212-315] 4.9E-18

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
FBX8_HUMAN	52.041 %	301	2.3E-101