- Transcript 'Haaura.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S349.g04494.01.t
Possible name(s)
ZIC2; ZIC3; ZIC4
Gene model
Location
S349 [61,137 / 63,780]
Amino acid sequence
Length: 615
>Haaura.CG.MTP2014.S349.g04494.01.p
MKESENFNFSRPIDKAVHDSSYVTTHPVSYAYDNFYNPHDAAGAPVVSNRQMLYHPSNSY
PSDPSGAKAHGLQVTNFYQSPYEICCNDPCKVAPYATFQSGRAISSEGFVQASSEDSYQD
NGYVSAQFDSNGKPISSNSNISMGYHQAPTALNFHSFHTFPPNKFYSPPQSMNDFYTFIR
PQQIHQQLGMCQSDYVCKWMYPVNKQQLGKSTVTNEAPEVTEEPCNRVFVTLLDLVTHIS
LNHIGGSEQIDHTCYWQNCSRGKKSFKAKYKLVNHTRVHTGERPFSCPFPGCGKMFARSE
NLKIHKRIHTGERPFTCTFPGCDRRFANSSDRKKHSHVHTSDKPYTCKIKGCDKNYTHPS
SLRKHMRLHEAQGDVIHHQFDAECEKIDALNIPSSDSNNNIKRFCHSVSPGNLNTNNNIT
PIATSSMTSVPASLTNFNGNLNQKSPKENMLYRPDGCNQNSYEMGKPAVTKMYTEPGVKA
GNGLFTEVLNTPLHAYSANDWYVYQTQRLGGMPTPPSEDRSQTNIATLCYKTSMRTEEIR
NTSLPYHYSDPIIHTLVHLFQRCLEFCTHTTHWRLFVIQCLLFARSPFCCRLYFHVPCIL
NFIQSVYELCELVFF
Nucleotide sequence
Length: 1,845
>Haaura.CG.MTP2014.S349.g04494.01.t
ATGAAAGAATCTGAAAACTTTAACTTTTCTCGGCCCATCGATAAGGCTGTTCATGATAGT
AGCTACGTCACAACGCATCCCGTGAGTTACGCTTATGATAATTTTTACAATCCCCATGAC
GCTGCTGGAGCACCAGTAGTAAGTAATCGCCAAATGCTTTACCATCCATCGAATTCATAT
CCAAGCGACCCCTCCGGTGCGAAGGCTCATGGCCTACAAGTGACAAATTTTTATCAATCT
CCCTATGAAATATGCTGTAACGATCCGTGTAAAGTCGCACCCTACGCTACATTCCAAAGT
GGGCGTGCTATTTCATCAGAGGGCTTTGTGCAGGCCAGTTCTGAAGACTCTTACCAAGAC
AACGGTTATGTCAGTGCTCAGTTCGATTCGAACGGGAAACCCATTTCGTCGAATTCAAAT
ATTTCCATGGGATATCATCAAGCACCAACTGCACTAAATTTTCACTCGTTTCACACTTTT
CCACCCAACAAATTTTATTCTCCACCACAATCGATGAACGACTTTTATACTTTCATCCGA
CCACAACAAATCCATCAGCAACTCGGCATGTGCCAGTCAGATTATGTATGCAAGTGGATG
TATCCTGTTAATAAACAGCAGTTGGGAAAATCTACTGTGACGAATGAAGCACCGGAGGTC
ACCGAGGAACCGTGCAATCGTGTTTTCGTAACGTTGCTAGACCTTGTAACTCACATCAGC
TTGAACCACATTGGCGGATCGGAGCAAATCGACCATACTTGTTATTGGCAAAATTGCTCA
CGAGGAAAGAAAAGTTTCAAGGCTAAATATAAACTGGTCAATCACACTCGCGTTCATACG
GGTGAAAGACCGTTTTCTTGTCCCTTCCCCGGATGTGGAAAAATGTTTGCCCGCAGCGAG
AATTTGAAGATTCACAAAAGAATTCATACAGGAGAACGGCCGTTCACTTGCACTTTTCCA
GGATGCGATCGTCGTTTTGCAAATAGTTCTGACAGAAAAAAACACAGTCACGTGCACACA
TCAGACAAACCATATACTTGCAAGATAAAGGGATGCGATAAGAATTATACGCATCCTAGC
TCCTTGCGGAAACACATGAGACTTCACGAGGCCCAAGGAGACGTTATCCATCATCAATTC
GACGCTGAGTGTGAAAAAATCGATGCTTTGAACATACCTTCATCCGACAGTAACAATAAC
ATCAAACGGTTTTGTCACTCCGTGTCTCCGGGGAATCTTAATACGAACAACAACATTACA
CCTATTGCGACTTCATCTATGACGAGTGTGCCTGCTTCTCTCACAAATTTCAATGGCAAC
TTGAACCAGAAATCGCCGAAAGAGAATATGCTTTATAGACCAGATGGATGCAACCAAAAT
AGCTACGAAATGGGAAAACCTGCCGTGACAAAAATGTACACGGAACCCGGAGTCAAAGCT
GGAAACGGACTGTTTACCGAAGTTTTGAACACGCCGTTACATGCGTACAGTGCTAACGAC
TGGTACGTCTATCAAACCCAAAGACTTGGAGGAATGCCTACACCACCGAGCGAAGATAGA
TCGCAAACTAACATTGCTACGCTTTGTTATAAAACTTCTATGAGGACCGAGGAAATTCGT
AATACATCTCTGCCTTATCATTATTCTGATCCAATAATTCACACGCTTGTGCACCTTTTT
CAAAGATGCCTTGAATTTTGCACACATACAACACATTGGAGATTGTTTGTTATTCAGTGT
CTTCTTTTTGCACGTTCACCATTTTGTTGTCGTTTATATTTTCATGTTCCCTGTATTCTT
AATTTCATACAGTCTGTTTATGAGCTATGTGAGCTCGTTTTTTTT
| SMART |
Znf_C2H2_type (IPR013087) - T[252-279] 9.3 - T[285-309] 1.8E-4 - T[315-339] 0.025 - T[345-369] 1.7E-4 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[257-284] 11.531 - T[285-314] 16.54 - T[315-344] 12.902 - T[345-374] 11.655 |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[265-321] 5.14E-19 - T[326-370] 4.27E-10 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[287-309] . - T[317-339] . - T[347-369] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZIC4_HUMAN | 59.113 % | 253 | 4.65E-79 |
| ZIC2_HUMAN | 60.914 % | 255 | 2.03E-77 |
| ZIC3_HUMAN | 55.702 % | 259 | 6.25E-80 |