- Transcript 'Haaura.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S3591.g10343.01.t
Possible name(s)
ASCC3; HFM1; SNRNP200
Gene model
Location
S3591 [7 / 6,330]
Amino acid sequence
Length: 2,036
>Haaura.CG.MTP2014.S3591.g10343.01.p
MADASARSLQYEYKANSNLVLQADRSLIDRRPRDEPTGEVISLQGKLTGMRMGDRAQRTK
PPQMEERRAKRHKRDEDQKTSVKLRGATLLSEGIDEMVNILYKPKTKETRETYEILLSFI
QAALGDQPRDILCGAADEIILVLKNDRLRDKERRKEIQSLLGQQEDSRYHVLVNLGKKIT
DFGTDKGAETADDNIDETYGVNVQFESDEEEDDQENRYGEVQGDSEDEEDQDEGGVETDA
KMVVSANLTNEAGNVNVVKNRALHPRDVDAYWLQRNLSKVYDDAIVSQKKAEEVLDILKT
ASDDLQCENQLVMLLGFNQFDFIKVLRQNRQMILYCTLLASAQSDSAKKTIEDKMKNDSR
LSAILQQLRETNKEDIIREEQERRERVRRSKVDADLEAMETDQTDDALQPNQVVDLEDIM
FEQGSHLMANKKCQLPDGSYRKQRKGYEEVHVPALKAKPFGDDEKLTPIDALPKFAQAAF
EGFKSLNRIQSKLGKTALESDENILLCAPTGGGKTNVALLTMLREIGKHINPDGTINVND
FKIIYIAPMRSLVQEMVGNFGKRLAAYGIKVSELTGDHQLCKEEINATQIIVCTPEKWDI
ITRKGGERTYTQLVRLLIIDEIHMLHDDRGPVLEAVVARTIRSIETTQEDVRLVGLSATL
PNYEDVATFLRVDPSKGLFFFDNSFRPCPLEQQYIGITEKKAIKRFQVMNEVVYEKVVDN
AGKNQVLIFVHSRKETGKTARAIRDMCLENDTLGHFLREGSASTEVLRTESEQVKNLELK
DLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYS
PEKGRWVELGALDVLQMMGRAGRPQYDTKGEGVLITSHSELQYYLSLLNQQLPIESQMVA
KLPDMLNAEIVLGNVQTVRDAVNWLGYSYLYIRMLRHPALYAISHDTLKADPLLQQHRVD
LIHAAANILDKNGLAKYDRKSGNLQVTDLGRIASHYYCTYESMATYNQLLKPTLSEIELF
RVFSLSSEFRYINVREEEKLELQKLLERVPIPVKEGIDEPSAKINVLLQTYISQLKLDGF
ALMSDMVYVTQSAGRLMRAIFEIVLYRGWAQLTEKCLSLGKMINRRMWQSMTPLRQFKKV
PEEVVKKIEKKNFPWERFYDLNHNEIGELIRMPKMGKTLHKLIHQFPKMELSVHIQPITR
STLRVELTITPDFQWDEKVHGSSEAFWILVEDVDSEIILHHEYFLLKRKYATDEHIVNFF
VPVFEPLPPQYFIRIVSDRWLASETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNP
EFESLYEDKFPCFNPIQTQVFNALYHSDENVFIGAPTGSGKTVCAEFAMMRALTQNPDAR
CVYVTPMDALAEITYQDWREKFEVQLGKRVVLLTGETSTDLKLIAKGNIVIATPEKWDVL
SRRWKQRKNVQNVSLFVVDEIHLLGGEAGPELEVVCSRMRYVSSQLERQIRIVALGSSLA
NAKDAAQWLGCSATHTFNFHPNVRPVPLEIHIQGFNISHAQSRVLSMAKPVYNAVVKHSP
KRSVIVFVASRKQTKLTAVDMLTYAAADSQPQRFLHCKEEDLAPYLEHVKDETLKETLSN
GVAYLHDGTTSVERKVVDQLFSSGAVQVLVASRSLCWGLTVAAHLVVVMDTQYYNGKIHS
YVDYPVTDVLQMIGRANRPLKDEEGKCVIMCQGSKKDFFKKFVYEPLPVESHLDHCLHDH
FNAEIVTKTIENKQDAVDYMTWTFLYRRMTQNPNYYNLQGVSHRHLSDSLSELVENTLSD
LEQSKCIAIEDEIDVSPLNLAMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEY
ENIPIRHREDATLRQLLEKVPYKPQNPRFTDPHIKTNLLLQAHLSRLQLPAELQSDTEVI
LSKSVRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFSPDIIKRCT
EKEIESVFDILEMEDDERNGILRLTDAQMADVARFCNRYPNIELMYDVMEQENLRA
Nucleotide sequence
Length: 6,108
>Haaura.CG.MTP2014.S3591.g10343.01.t
ATGGCTGACGCATCAGCCCGTTCGCTTCAGTACGAGTACAAGGCAAATTCAAATCTTGTA
CTTCAAGCAGATAGATCATTGATAGATAGAAGACCCCGTGATGAACCTACAGGCGAAGTT
ATATCACTGCAGGGTAAGCTGACGGGAATGAGAATGGGAGACCGAGCTCAGCGCACCAAG
CCTCCTCAGATGGAAGAAAGGCGTGCTAAGCGTCACAAGAGGGATGAGGATCAAAAAACC
TCGGTGAAGCTGAGAGGTGCAACACTTCTTTCCGAGGGAATAGATGAAATGGTGAACATT
CTTTACAAGCCAAAAACCAAGGAGACGAGAGAAACATATGAAATTTTGCTCAGTTTTATA
CAGGCAGCTTTGGGGGATCAGCCTAGAGACATCCTTTGTGGTGCTGCAGACGAGATCATC
CTGGTTTTAAAGAACGACAGGCTTAGAGACAAAGAGAGACGTAAAGAGATTCAGTCTTTA
CTGGGACAGCAGGAAGATTCGAGATATCATGTACTTGTCAACTTGGGTAAAAAGATAACT
GATTTTGGTACGGACAAGGGAGCTGAAACGGCTGACGACAACATTGATGAAACGTATGGA
GTCAACGTCCAGTTCGAGTCGGATGAAGAAGAGGACGATCAGGAAAACAGGTATGGTGAG
GTTCAGGGAGATTCTGAAGATGAAGAAGACCAGGATGAGGGAGGAGTGGAAACTGATGCG
AAAATGGTTGTTTCTGCCAATCTCACAAATGAAGCAGGAAATGTAAATGTTGTAAAAAAC
AGGGCTCTGCACCCAAGAGATGTGGATGCATACTGGCTCCAGAGAAACTTGAGCAAAGTG
TACGATGACGCTATTGTATCACAAAAAAAGGCTGAGGAAGTTTTAGATATTTTGAAGACA
GCTTCGGATGACCTGCAATGTGAGAATCAGCTTGTGATGCTGTTAGGATTCAACCAGTTT
GATTTCATCAAAGTTTTACGGCAGAACAGGCAGATGATTCTCTATTGTACGCTTCTGGCT
AGTGCACAAAGTGACTCAGCGAAGAAGACAATTGAAGACAAGATGAAAAATGATTCTAGG
CTCTCTGCCATCTTGCAACAACTAAGAGAAACAAACAAAGAAGATATCATTAGGGAGGAG
CAGGAGAGACGTGAACGAGTACGTAGAAGCAAAGTGGACGCCGATCTAGAAGCCATGGAA
ACCGATCAAACCGATGATGCTCTTCAACCGAATCAAGTGGTTGATCTTGAAGATATCATG
TTCGAGCAAGGATCTCATCTCATGGCTAACAAAAAATGCCAATTGCCTGATGGCTCATAC
CGTAAGCAACGCAAGGGGTATGAGGAAGTTCACGTACCGGCCCTTAAGGCCAAGCCTTTT
GGGGACGATGAAAAATTAACTCCCATTGACGCTTTGCCAAAATTTGCACAAGCTGCATTT
GAGGGGTTCAAAAGTTTAAACAGAATCCAGAGTAAACTTGGAAAAACAGCCCTGGAAAGC
GATGAAAACATTCTCCTGTGTGCGCCGACAGGAGGTGGTAAAACGAATGTGGCCTTGCTG
ACAATGCTCAGGGAAATCGGAAAGCACATCAATCCAGACGGAACAATAAATGTGAATGAT
TTCAAAATAATCTACATAGCTCCCATGAGATCTCTGGTCCAGGAAATGGTCGGAAATTTT
GGGAAGAGATTGGCAGCTTACGGAATCAAAGTTAGCGAACTCACAGGAGACCATCAGTTG
TGCAAGGAGGAAATAAATGCGACACAAATCATAGTCTGCACCCCGGAAAAATGGGACATC
ATTACCCGGAAGGGAGGAGAGAGAACATACACGCAATTGGTACGACTGCTGATTATTGAT
GAAATCCACATGCTGCACGATGACAGAGGACCGGTGCTTGAAGCAGTCGTGGCACGAACC
ATCAGATCCATTGAAACTACACAGGAGGATGTTCGTCTTGTTGGACTTTCCGCAACCCTT
CCCAACTACGAGGACGTTGCTACTTTCTTGCGTGTCGATCCCTCGAAAGGCTTGTTTTTC
TTTGACAACAGTTTCAGGCCTTGTCCTTTAGAGCAACAATACATAGGAATAACTGAGAAA
AAGGCCATCAAAAGATTTCAAGTCATGAACGAAGTAGTGTATGAGAAAGTGGTTGATAAC
GCTGGTAAAAATCAGGTACTGATCTTCGTTCATTCGCGAAAAGAAACCGGAAAGACAGCC
CGTGCTATTCGGGACATGTGTCTTGAAAACGATACACTCGGCCATTTCCTCCGCGAAGGA
TCGGCATCCACAGAAGTCTTGCGTACGGAATCGGAACAAGTGAAGAACCTGGAGCTGAAA
GATCTGCTTCCCTATGGTTTCGCTATCCATCATGCCGGAATGACCCGTGTCGACAGAACC
TTAGTCGAAGATCTTTTCGCGGATCGTCATATTCAAGTCCTGGTTTCCACAGCGACATTG
GCGTGGGGTGTCAATCTTCCGGCACATACTGTCATCATCAAAGGGACGCAGGTTTACAGC
CCTGAAAAAGGCAGATGGGTCGAATTAGGAGCTCTTGATGTGTTGCAGATGATGGGACGT
GCTGGCAGACCTCAGTATGATACCAAGGGTGAAGGCGTGCTCATAACATCACATAGTGAA
TTGCAATACTATCTCTCGCTTCTTAATCAGCAGTTGCCAATCGAAAGTCAGATGGTTGCC
AAGTTACCTGATATGTTGAATGCAGAAATAGTTCTTGGAAATGTTCAGACTGTGCGAGAT
GCGGTCAACTGGCTTGGATATTCCTACCTCTATATCAGAATGCTGCGACATCCCGCTCTG
TATGCTATAAGCCATGACACTTTGAAGGCCGATCCTCTACTTCAACAGCATAGAGTGGAT
CTCATTCACGCTGCTGCAAACATTCTGGACAAAAACGGCTTGGCAAAGTATGATCGTAAG
TCGGGAAACTTGCAGGTAACAGACCTCGGGCGTATTGCCAGTCATTATTACTGTACTTAT
GAAAGTATGGCGACGTACAACCAGCTTCTTAAACCAACGCTGAGCGAAATAGAGCTATTC
AGAGTGTTTTCACTCTCGTCCGAATTCAGGTATATTAACGTGAGGGAAGAGGAGAAGCTC
GAGTTGCAGAAGCTTCTAGAGAGAGTTCCGATTCCAGTCAAGGAAGGTATAGATGAGCCT
TCTGCTAAAATAAATGTTCTTCTGCAAACTTACATTTCACAGCTCAAACTGGATGGATTT
GCACTGATGTCAGACATGGTATACGTCACGCAGTCAGCAGGAAGACTCATGAGGGCGATA
TTTGAAATCGTTCTGTATCGTGGCTGGGCACAACTGACAGAAAAATGCTTGTCGCTCGGC
AAAATGATTAATAGACGAATGTGGCAGTCGATGACCCCACTTCGACAGTTCAAAAAGGTA
CCAGAAGAGGTTGTGAAGAAGATAGAGAAGAAAAATTTTCCTTGGGAACGCTTTTATGAT
CTGAATCACAACGAAATAGGAGAACTGATCAGAATGCCGAAGATGGGGAAAACATTGCAC
AAATTGATTCATCAGTTCCCAAAAATGGAGCTCTCGGTCCACATACAACCTATCACAAGA
TCCACACTACGTGTAGAGCTCACGATCACACCGGACTTTCAGTGGGATGAAAAAGTGCAT
GGTTCATCAGAGGCTTTCTGGATCCTTGTTGAGGATGTCGACAGTGAAATCATTCTACAT
CATGAATATTTCCTACTGAAAAGAAAATATGCCACTGATGAGCACATCGTAAATTTCTTC
GTGCCCGTCTTTGAGCCTCTGCCTCCGCAATACTTCATACGTATAGTGTCTGACAGATGG
CTAGCATCAGAAACCCAACTTCCAGTTTCTTTCCGTCATTTGATTTTGCCGGAAAAGTAT
CCACCTCCGACGGAACTTCTAGACCTGCAGCCTCTTCCCGTGACGGCTTTAAGGAACCCA
GAATTTGAATCCCTTTATGAGGATAAGTTTCCCTGCTTCAATCCAATCCAGACCCAAGTT
TTTAATGCTCTTTACCACAGCGATGAAAATGTTTTCATTGGTGCACCTACAGGCAGTGGT
AAGACTGTGTGTGCTGAATTTGCAATGATGCGTGCCCTGACTCAAAATCCAGATGCCAGG
TGCGTTTACGTAACTCCGATGGATGCTCTTGCCGAAATCACTTATCAGGATTGGAGAGAA
AAGTTTGAGGTTCAGCTCGGTAAACGTGTCGTTTTGCTAACAGGAGAAACGAGTACAGAT
TTGAAGTTGATTGCTAAAGGCAACATTGTCATTGCTACACCTGAGAAATGGGATGTTCTT
TCCAGAAGATGGAAGCAGAGGAAGAATGTCCAAAATGTCTCGCTCTTCGTAGTGGATGAG
ATTCATTTGCTCGGAGGTGAAGCTGGACCGGAGCTTGAGGTAGTTTGCTCGAGGATGCGA
TACGTTTCTTCGCAGCTGGAGCGACAGATCCGTATTGTGGCGCTCGGTTCTTCTCTTGCA
AATGCTAAGGATGCTGCACAATGGCTGGGATGTAGTGCCACGCATACATTCAATTTCCAT
CCCAACGTTCGACCAGTTCCATTGGAAATTCACATTCAGGGCTTCAATATCAGCCATGCC
CAGTCCCGTGTGCTCAGTATGGCAAAGCCGGTGTATAATGCCGTAGTAAAACACTCTCCA
AAACGTTCAGTTATTGTATTCGTCGCATCGAGAAAGCAAACGAAGCTGACTGCTGTTGAC
ATGCTGACTTATGCTGCTGCTGACAGTCAGCCCCAAAGATTCCTCCATTGCAAAGAGGAA
GATCTTGCTCCCTATTTAGAGCATGTCAAGGATGAAACACTGAAGGAGACTTTGAGCAAT
GGTGTCGCCTATCTTCATGACGGCACCACGTCCGTAGAGCGAAAAGTTGTGGACCAACTC
TTTTCCTCCGGGGCCGTCCAGGTACTTGTCGCTTCGCGTAGCCTGTGTTGGGGTTTGACG
GTAGCTGCTCATTTGGTCGTCGTCATGGACACCCAGTACTACAATGGTAAGATCCATTCA
TATGTGGACTACCCGGTCACTGATGTGCTGCAGATGATTGGGCGTGCAAACCGACCTCTG
AAAGATGAAGAAGGAAAATGTGTCATTATGTGTCAAGGATCAAAGAAAGATTTTTTCAAA
AAATTTGTGTATGAACCCTTACCTGTTGAATCTCACTTGGACCATTGCTTGCACGACCAC
TTCAATGCGGAAATTGTGACCAAGACTATTGAAAACAAGCAAGATGCTGTGGACTACATG
ACCTGGACATTCTTATACAGGCGTATGACACAAAATCCCAACTACTACAACTTGCAGGGA
GTATCGCATCGTCATTTGTCAGACAGTCTGTCAGAGCTGGTAGAAAATACTTTGTCTGAT
CTTGAGCAATCCAAATGCATTGCGATCGAGGATGAAATCGACGTATCGCCACTCAACCTG
GCCATGATCGCGGCTTACTATTACATAAATTACACCACAATTGAGTTGTTCAGTATGTCC
TTGAATGCCAAAACCAAAATTCGTGGCCTCATCGAGATCATCAGCAACGCTGCCGAGTAT
GAAAACATCCCCATCAGACACAGGGAAGATGCTACACTCCGGCAGCTTCTAGAGAAAGTA
CCATACAAACCACAGAATCCAAGGTTCACAGACCCCCACATAAAAACCAATCTACTACTG
CAGGCACATCTGTCACGTCTTCAACTGCCAGCAGAACTGCAGTCGGACACCGAGGTTATT
TTAAGCAAGTCCGTTCGACTTATCCAGGCCTGCGTGGACGTCCTGTCATCAAATGGCTGG
CTATCACCGGCACTGGCTGCTATGGAACTGGCGCAGATGGTGACACAGGCTATGTGGAGC
AAGGACTCCTATCTCAAACAGCTGCCACATTTCAGTCCTGATATTATCAAGCGATGCACT
GAAAAGGAAATAGAGAGTGTGTTTGACATCCTTGAGATGGAAGACGATGAACGAAATGGT
ATCCTGCGTCTAACGGATGCCCAGATGGCAGATGTGGCTAGATTTTGCAATCGTTACCCT
AATATTGAGCTGATGTATGATGTAATGGAACAAGAAAACTTGCGAGCG
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[426-671] 1.69E-44 - T[681-893] 1.98E-47 - T[1219-1475] 1.3E-49 - T[1503-1514] 1.3E-49 - T[1519-1728] 3.13E-40 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[482-693] 1.0E-31 - T[1329-1533] 2.7E-27 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[488-663] 3.4E-26 - T[1335-1518] 8.1E-26 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[495-678] 21.613 - T[1342-1517] 20.871 |
| SMART |
AAA+_ATPase (IPR003593) - T[500-817] 0.24 - T[1347-1522] 1.4 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[689-926] 11.993 - T[1550-1758] 10.126 |
| CDD |
Helicase_C (IPR001650) - T[689-863] 3.27152E-13 |
| SMART |
Helicase_C (IPR001650) - T[773-865] 4.9E-17 - T[1612-1700] 2.8E-10 |
| Pfam |
Helicase_C (IPR001650) - T[774-863] 1.5E-6 - T[1611-1698] 5.9E-5 |
| SUPERFAMILY |
WH_DNA-bd_sf (IPR036390) - T[893-997] 7.07E-6 - T[1728-1828] 2.72E-7 |
| SMART |
Sec63-dom (IPR004179) - T[986-1291] 3.9E-124 - T[1817-2036] 2.1E-57 |
| Pfam |
Sec63-dom (IPR004179) - T[987-1290] 3.2E-92 - T[1817-2028] 4.1E-55 |
| Gene3D |
C2_domain_sf (IPR035892) - T[1186-1294] 1.6E-49 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ASCC3_HUMAN | 44.994 % | 1530 | 0 |
| U520_HUMAN | 80.452 % | 3428 | 0 |
| HFM1_HUMAN | 33.181 % | 317 | 4.95E-88 |