- Transcript 'Haaura.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S36.g00945.01.t
Possible name(s)
PCDH18; PCDH19; PCDHA4
Gene model
Location
S36 [3,275 / 13,086]
Amino acid sequence
Length: 1,161
>Haaura.CG.MTP2014.S36.g00945.01.p
MDILWSFLYLYLCVINFSACSSSPFKSTVHVNEETKDGNTGAIIADVADLTSAKLLPNIR
PRINKKFRIISQKLKSSSSLDVSLKSSENKATRWLKIDERTGLVKIMRHVDRDVVCAGKE
ECVIRAEVVVLPQEIFALVELDVVIDDVNDNAPEFPIKFVTFNLSESRSVSEMINLDPYK
ATDLDSGRNSLIHYNLSNNSYFALKQFNDENGQSHVQLYLLRNLDHEAIPEVSMTVTATD
SGVPPLTDVMTIKIVIADVNDNYPIFEQQEYIVTLKENFAPGNVIATVKANDLDSGAFGY
VKYSIPARSGNIARGLVSIDEDRGIITLIKLVDRESHHGLRILVEAHDSDPNNRKSAETW
LVIYVEDVNDNSPVINVDFVLESSENTVFITESSPIGTFLAKVSATDADAGRNGDVNVRI
TSKELNQGKRAKSSAENQSRNLFTVNDYGFIESRIKLDRELCNQYRMIITACDLGESSRC
STKLVLISVMDVNEFAPKFEMLNQRINLREDASVSTDVTTVSATDGDSVNGQALTKNEDD
NIVPSKNGQVYYSIVSGSGGVFTIDKRSGLIHGGEPPKESKSDVTVLVDDVNDNPPRFTN
PGFNNSVVYANIKSNKLVTKIQAVDYDFGFNAKIRYYLESDNGVKSDERRSIKKFMLVKS
NKQISGPFFILNPLNGDLRVNFSHGNLSDGLGLHLLVVRAQDSGTPPLNTKTTLRVVVTK
GMIPRTGGRNDFSGSTDFLILAVALGCATIFLMFLIIAVALKCRKMNKEIRTYSVPKKSD
LEKSEKFEESIEKQSNRDENISLEKDQNFSEKASNSNRSTPASSPTKSEDNGQIASALYQ
CDPAKKRLDIASSSHSDGDSGRGDSEADVVSCNVADAKGKLLIDERLFSDIHQRRELGNT
LGPHCNDKCRIYGHSDTCWMPVQSSYEMQPRKALPHYDWNKMKLRYHYPERSRHSLAVAD
NMMHRARCSDSNLLPYNTNYVLAASNHPSMRHVNSACHMPEYQRLPLHLQRPRSTTPTTS
FQSNNAHPYSSRESEYVESPAARSCQTTLCEFESCLSPGRSTGYSANFVGCGTGLDTLYE
SDSTGNNLPPPTTVKFPDHKTSEIRSHESGNIESNLSQTPSPSGSSSSSGSFDNNVPMSQ
ELISMQETRQIIDDIESLLV*
Nucleotide sequence
Length: 4,269
>Haaura.CG.MTP2014.S36.g00945.01.t
TCAAATTTGTATTTTAAACTCCGAATATTATTGCAAACTGCTTGTTGATCGACTCAGATA
CCATCAAAGAGAGTTGACTACTATCTGCTTGAAACTTTTGGTGGTTCTTTTACAAAAGAT
AAGACCCAAAAAGTTTGGTGTAGGAGGTAAAATCTTCTTCGAAAAGTTGCAGCGTCACAA
GGCAAAAGATGTTTACTTTTAAAATCACGAGAGAGAAAAACCGGAAAACAGGTCTACACG
GTGCTCTGCACTCGCTTGCTATTTCAAAGATCATGTACCGCTCATTACGGATGGGTGCAA
TACAACTATTAGGCCGAAGAATTTACCAGACTACTATGCCTCGACCCTCCCTTTCTTAAT
TTTCACAAGCGTCTGTTTTGGCTATATCGGTTCCTTTGTAAGGAATACTATGTTGACTTC
AAAGGGAATCCTATTTTACTACTATTTCATACTCAAGTATGTCTTTATTGACAGTGTTTT
ACGACCAGGTCTACAGGGCAATATTTAGATTCCTGCTAACCTTCGTACACGAAATTTAAT
GTCAAAAGTGTAAGACAACAAAAAGCTTTAATGTCAGGTCCATTACTGTACAGAGTCGGG
TTGTCCTCCGTCTACCACCTGCCGCTGACATCACTACAAAAAGATTTTATTTACCTATGT
ATCATTTTCCCACTGGGATATGAATTTATCCTCACAAATTTGATCATCTTCAATTACTCA
CTAGTTTTCATTGAATTGAATAATTTTCCGCGTCAATAACGTCTTTCATCTATTTCAGTT
GAAAACATGGATATATTATGGAGTTTTCTTTACCTCTACTTGTGTGTCATCAACTTTTCT
GCCTGTTCTTCGTCGCCTTTCAAATCGACCGTCCACGTCAACGAGGAAACCAAAGACGGT
AATACCGGAGCCATCATTGCTGACGTTGCCGATCTTACTTCAGCGAAATTGTTGCCCAAT
ATTCGCCCAAGAATTAATAAAAAGTTCCGGATTATAAGTCAAAAATTGAAAAGTTCCAGC
TCTTTGGATGTATCCCTTAAAAGTTCAGAAAACAAAGCCACACGATGGTTGAAAATAGAC
GAAAGAACCGGGCTTGTCAAAATCATGCGACATGTCGATAGAGATGTGGTATGTGCTGGA
AAAGAGGAATGCGTCATCCGTGCAGAGGTTGTTGTACTGCCTCAAGAAATTTTCGCCCTA
GTCGAACTGGACGTCGTTATTGACGACGTGAATGACAACGCTCCGGAATTTCCGATCAAA
TTCGTTACTTTCAACTTATCCGAAAGTCGTTCTGTCAGTGAGATGATAAATCTGGATCCC
TACAAAGCCACCGATTTGGATTCAGGAAGGAACTCATTGATTCACTACAATCTGTCAAAC
AATTCTTATTTTGCATTGAAACAATTCAACGACGAAAACGGCCAGTCACATGTTCAGCTG
TATTTGCTTAGGAATCTTGACCATGAGGCCATACCGGAGGTCAGTATGACCGTTACGGCA
ACAGACAGCGGAGTGCCACCGCTGACAGACGTCATGACGATCAAGATAGTGATTGCAGAT
GTAAACGACAATTATCCAATTTTTGAACAACAGGAATACATTGTCACACTGAAAGAAAAC
TTTGCTCCCGGTAACGTGATCGCTACGGTAAAAGCAAACGACTTGGACAGCGGAGCTTTC
GGCTATGTAAAGTATTCAATTCCGGCTAGAAGCGGAAACATCGCCCGAGGTCTCGTATCT
ATTGACGAAGATCGCGGTATTATCACGTTGATCAAATTGGTCGACAGAGAAAGCCATCAT
GGTCTCCGTATCCTTGTGGAGGCCCACGATTCTGATCCGAACAATCGAAAGTCGGCCGAG
ACGTGGTTAGTGATTTACGTAGAAGACGTCAACGACAATTCCCCAGTGATAAATGTGGAT
TTCGTACTGGAATCGTCAGAAAACACAGTTTTCATCACGGAGTCGTCCCCGATCGGAACC
TTTCTCGCTAAAGTATCAGCAACTGATGCTGACGCTGGAAGAAACGGAGATGTCAATGTT
CGAATTACATCCAAAGAACTAAACCAAGGGAAAAGAGCAAAGTCATCTGCTGAAAATCAA
TCTCGAAATCTGTTCACAGTGAATGATTACGGATTCATTGAAAGCAGGATAAAGCTTGAT
CGGGAGCTTTGCAATCAGTACAGAATGATTATAACGGCTTGTGACCTTGGAGAATCATCA
AGATGCTCAACCAAACTAGTATTAATATCTGTCATGGACGTGAACGAATTTGCTCCTAAA
TTTGAGATGCTGAATCAGAGAATAAATTTACGTGAGGACGCCTCTGTCAGCACGGACGTT
ACTACTGTGTCAGCCACCGATGGAGATAGCGTTAATGGGCAAGCCTTGACCAAAAATGAG
GATGACAATATCGTCCCATCGAAGAATGGACAAGTTTACTACTCCATTGTTAGCGGTAGT
GGCGGTGTTTTCACAATCGACAAAAGGTCTGGTTTAATCCATGGAGGAGAACCCCCAAAG
GAAAGCAAGAGTGACGTAACCGTTTTGGTAGATGATGTGAACGACAACCCACCACGTTTT
ACAAACCCAGGCTTTAATAACTCTGTGGTTTACGCAAACATTAAGTCTAATAAACTTGTC
ACTAAAATACAGGCTGTGGATTACGATTTCGGCTTTAACGCGAAAATTCGATACTACTTG
GAATCGGACAACGGCGTAAAGAGTGACGAACGGCGCAGCATAAAAAAATTCATGCTTGTG
AAATCGAATAAGCAAATTTCCGGCCCGTTTTTCATTCTCAATCCACTTAACGGGGATCTA
CGTGTCAATTTTAGTCATGGTAACCTTTCCGACGGACTCGGACTCCATCTCTTAGTTGTT
CGGGCACAGGATTCAGGAACTCCTCCACTGAACACTAAAACCACTCTTCGAGTAGTGGTT
ACCAAGGGTATGATTCCAAGGACTGGAGGAAGGAACGATTTTTCCGGGTCTACTGATTTT
CTCATCCTGGCGGTTGCTCTAGGATGCGCAACAATCTTTCTTATGTTTCTTATCATAGCT
GTTGCTCTCAAATGCAGAAAAATGAATAAGGAAATAAGGACTTACAGCGTTCCCAAGAAA
AGTGATCTAGAAAAGAGTGAAAAGTTTGAAGAAAGTATTGAAAAGCAAAGCAATCGTGAT
GAAAATATCTCACTTGAAAAAGATCAAAATTTTTCAGAAAAAGCGAGTAACAGTAACAGA
TCCACTCCAGCTTCATCGCCGACAAAATCAGAAGACAATGGTCAAATTGCATCAGCTTTA
TATCAATGCGATCCTGCTAAAAAGAGGCTAGATATTGCAAGTTCTTCTCATTCGGATGGC
GACAGTGGAAGAGGAGACAGTGAAGCAGACGTTGTGAGTTGCAACGTGGCGGATGCTAAA
GGTAAACTGCTAATTGATGAACGTTTATTTTCAGATATCCATCAAAGAAGGGAGCTCGGT
AACACACTGGGCCCACACTGCAACGATAAATGCAGAATATATGGCCACAGCGACACCTGC
TGGATGCCAGTGCAATCATCATATGAAATGCAACCACGAAAAGCTTTGCCTCATTACGAC
TGGAATAAAATGAAACTAAGATATCATTATCCGGAAAGATCACGTCACTCCCTGGCAGTT
GCAGACAACATGATGCATCGAGCCAGATGTAGCGATTCTAATTTGCTTCCTTACAATACG
AATTACGTGTTAGCTGCCTCAAACCATCCATCCATGCGTCACGTTAACAGTGCTTGTCAT
ATGCCTGAATATCAAAGACTGCCACTACATTTACAAAGACCCAGATCCACTACTCCAACT
ACAAGCTTTCAGAGTAACAATGCTCATCCGTATTCTAGCCGAGAAAGCGAATATGTTGAA
TCACCGGCTGCGAGATCTTGTCAAACTACTCTCTGTGAATTTGAATCTTGCTTGTCGCCA
GGTCGCTCTACTGGCTATTCCGCAAACTTTGTAGGATGCGGAACAGGTCTAGACACTTTG
TACGAATCTGATTCCACTGGAAACAACCTCCCTCCTCCAACAACAGTCAAATTTCCGGAT
CACAAAACATCAGAAATCAGATCCCACGAAAGTGGAAATATCGAATCCAATCTTTCTCAA
ACTCCTTCACCTTCCGGGAGTTCAAGTTCTTCCGGAAGTTTTGATAACAATGTTCCAATG
AGCCAAGAACTTATTTCAATGCAAGAAACGCGGCAAATTATTGATGATATTGAAAGTTTA
CTTGTATAA
| SMART |
Cadherin (IPR002126) - T[70-153] 0.045 - T[179-264] 1.3E-22 - T[288-373] 4.0E-18 - T[403-497] 2.1E-17 - T[536-596] 0.072 - T[621-726] 0.0094 |
| Pfam |
Cadherin_N (IPR013164) - T[87-130] 6.0E-5 |
| PRINTS |
Cadherin (IPR002126) - T[93-112] 4.3E-21 - T[231-243] 4.3E-21 - T[245-264] 4.3E-21 - T[264-277] 4.3E-21 - T[322-348] 4.3E-21 - T[580-597] 4.3E-21 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[149-266] 7.14E-19 - T[254-380] 2.43E-26 - T[368-492] 3.71E-17 - T[493-590] 6.57E-8 - T[591-719] 2.28E-14 |
| Pfam |
Cadherin (IPR002126) - T[179-256] 1.0E-8 - T[272-365] 2.5E-8 - T[388-489] 1.6E-9 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[254-264] . - T[363-373] . - T[586-596] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCD18_HUMAN | 28.099 % | 284 | 1.21E-79 |
| PCD19_HUMAN | 29.504 % | 258 | 8.1E-71 |
| PCDA4_HUMAN | 28.836 % | 234 | 1.36E-63 |