- Transcript 'Haaura.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S36.g00946.01.t
Possible name(s)
PCDH10; PCDH18; PCDH19
Gene model
Location
S36 [30,527 / 38,412]
Amino acid sequence
Length: 1,181
>Haaura.CG.MTP2014.S36.g00946.01.p
MDTYTALNLIFYVFIVITCQPPSCTSASVKSSIHVEEGLPEGTFIVNLARLFNPKNSGFL
HQNYEYKILSQNLKAPASMRKRTSALRWVKLNSRNGVMTTTRKIDRETECPGADKCIVHI
QAMRLPQRAFTLLDLELIIDDVNDNSPMFDQGVIQISISESSSAGDVYSLDAYQAKDKDT
GNNSRIYYELSPNRFFGLKQYIGTGGMPHLQLYLLQDLDYERYPEIKLTLSAIDGGKPAL
QTKIPIKIQVIDVNDNVPVFPKKEYFITLRENLSPGNVVETVKAYDKDSDSYGQIRYTIP
RRNSATARSLLLVDENTGVLTLNERVDGKKHDGLRILIEARDNDPINPRTGECWVVISVE
DVNDNEPVITAIPILHSRDESIYVSELAPVGTYVMRVSAIDEDKGRNGEVHLEIKTNAVG
SCRRRSSRKDLLTSKLFVLSADGLVATGELLDRESCSEYIVTLKACDFGSPNRCSTKTIA
VVVLDENEYAPKFQAPTQRVVMSEDMPAGTIITTVRAYDGDNVNGRGFVQSKNGGVIEGE
NGKVSYYMTSGGRGFFTIDSETGTIRLLRPLDREEKKEWMLTITARDGAKPKSLESVCKV
IITVDDVNDNIPQFINPSTNNSLVYASISRDDVVVKLNAKDADSGRNSHLRFKIISDNTN
GLVSKSMMNNVNESNNFVLNSLTGELRLNFSRKNMSDLIGIHDITIRVTDMGETQLSSNI
SLRIKVSKSMLDNWKSHTNRDGETFTVNFLVLAVSLGSATVILMVVIIAVAIRCQRENED
MEMYNTPKHDEYDIEKKANKEISMVPDYNFTTAPGISVKSEILSSNGSHATIEVASASAS
NFTTKLEETIDVTHRNDPNHLSVSQNFESGANFHSDEDSGRGDSDVDVTSNNQTKDTAKL
QNRNVPVFGMGPFCNHQCKQLGHSDNCWMPRPGENTKIVPKRQTSVQAGENTLSITNPSN
HLRRYSSNDSCLNERPCLSKPRSRHPLQIINNGTREIYGSNRYLPPHEIKYASCKLPSIN
QVKYERSLSCRSTPTNFEPAGSFSSATCTRYYARNSSRNDMCINRGSATNLSVVHEKRPF
SLRNDNLLLENPSRSYFKTNSEGSSCKNVRFAPPDIATIKDHNAEESPKEDMVTGEASQK
VILRCSSVSSPTKTSSNTQPSVGCRYSMQDTCDIINDIDRL
Nucleotide sequence
Length: 3,666
>Haaura.CG.MTP2014.S36.g00946.01.t
ATGCCAGGTGGCCTACGAGCAACAGACGCTGTTTACTATTTTACCGGAACCTCGTTGAAA
AATATTGGGAAGTTAGTAGTTGTCGGCAATAGTATTTTTTGACAGTTTCGCATTTATATA
GGCATGGATACTTATACTGCATTAAATTTAATTTTCTATGTATTTATCGTCATAACATGT
CAGCCACCCAGTTGCACATCAGCTTCGGTTAAATCAAGCATTCACGTGGAAGAAGGATTG
CCAGAAGGTACGTTCATCGTAAACCTTGCCAGATTATTCAATCCCAAAAATTCTGGATTC
CTCCATCAAAATTACGAGTACAAGATACTGAGTCAAAATTTAAAGGCTCCAGCGTCGATG
AGAAAGCGAACCTCGGCGCTTCGTTGGGTCAAATTAAATTCTCGTAACGGTGTGATGACC
ACGACACGAAAGATAGATCGGGAAACGGAATGTCCAGGTGCAGATAAATGCATCGTCCAT
ATACAGGCGATGAGGCTGCCGCAAAGAGCATTCACGCTTCTCGATTTGGAATTAATTATT
GATGACGTCAACGATAACTCACCCATGTTCGATCAAGGGGTGATTCAAATTAGCATAAGT
GAAAGTTCAAGCGCCGGAGACGTATATAGTTTGGATGCATATCAAGCGAAGGACAAAGAT
ACTGGAAACAACTCTCGCATCTACTACGAATTATCCCCAAATCGTTTCTTTGGTTTGAAA
CAATATATTGGGACAGGAGGAATGCCGCACTTGCAACTTTACCTACTGCAGGATCTCGAT
TATGAACGATACCCTGAAATAAAATTAACACTATCGGCAATTGATGGCGGAAAACCTGCA
TTGCAAACCAAAATTCCTATCAAAATTCAAGTGATTGATGTAAACGACAATGTTCCAGTT
TTTCCAAAAAAGGAATACTTCATTACTTTGCGGGAAAACTTGTCGCCTGGAAACGTGGTT
GAAACGGTGAAGGCTTACGACAAAGATAGCGACAGTTACGGACAAATAAGATATACAATT
CCCCGAAGGAACAGCGCTACAGCCAGAAGCCTGCTATTGGTGGACGAGAATACGGGGGTG
CTTACACTTAATGAACGGGTCGACGGAAAAAAGCATGATGGATTAAGAATCTTGATCGAA
GCTAGAGACAACGATCCCATTAACCCAAGAACTGGAGAATGCTGGGTTGTCATCAGCGTG
GAGGACGTCAATGATAACGAACCTGTTATAACTGCGATTCCCATTCTGCACTCACGGGAT
GAAAGTATTTACGTATCGGAACTCGCTCCAGTGGGAACCTATGTGATGAGAGTGTCTGCT
ATAGACGAGGACAAGGGAAGAAACGGCGAAGTTCATTTGGAAATCAAAACAAACGCTGTG
GGAAGTTGCCGGAGGCGTTCATCCCGTAAAGACTTATTAACATCCAAACTGTTCGTGTTA
TCTGCTGATGGACTAGTAGCAACTGGTGAGCTGTTGGATCGAGAATCGTGTAGCGAATAC
ATCGTTACACTAAAGGCATGCGACTTTGGCAGTCCCAATCGATGTTCAACAAAAACAATC
GCTGTCGTAGTTTTGGACGAAAATGAATATGCACCAAAGTTCCAAGCGCCCACACAGCGC
GTAGTCATGAGCGAGGATATGCCAGCTGGCACGATTATTACAACAGTTAGAGCTTATGAT
GGTGACAATGTTAATGGCAGAGGATTTGTCCAAAGCAAGAACGGAGGAGTCATAGAGGGA
GAAAATGGTAAAGTTAGTTATTACATGACTAGCGGAGGACGCGGATTTTTTACGATTGAT
TCAGAAACAGGAACGATACGATTACTTCGACCTTTGGATAGGGAGGAAAAGAAGGAATGG
ATGCTAACTATAACTGCCCGCGATGGAGCAAAACCGAAATCTTTAGAAAGCGTCTGCAAG
GTCATTATAACCGTCGATGATGTGAACGATAACATCCCACAGTTCATCAATCCATCCACC
AATAATTCACTTGTTTATGCCAGCATTTCCAGAGATGATGTAGTTGTCAAATTAAATGCA
AAGGACGCTGATTCTGGGAGAAATTCTCATCTTCGCTTCAAGATAATCTCGGATAATACG
AATGGTTTGGTTTCCAAATCAATGATGAACAATGTCAATGAGTCCAACAATTTCGTACTG
AATTCACTCACTGGAGAACTTCGTTTAAATTTCAGTCGCAAAAACATGTCAGATCTCATC
GGAATCCATGATATTACGATACGAGTTACTGACATGGGCGAAACTCAGCTAAGCAGCAAC
ATATCTTTGCGAATCAAAGTGTCAAAATCAATGTTAGACAACTGGAAATCTCACACCAAT
CGAGATGGCGAAACTTTCACAGTTAACTTCTTAGTATTGGCAGTGTCACTCGGCTCCGCC
ACTGTCATACTGATGGTGGTGATTATCGCAGTGGCTATCAGATGTCAGCGAGAAAATGAG
GATATGGAAATGTACAATACACCAAAACATGATGAGTACGATATAGAAAAGAAGGCAAAC
AAAGAAATTTCTATGGTTCCAGACTATAACTTCACAACAGCACCCGGAATATCAGTTAAA
AGTGAAATCCTGTCCAGTAACGGATCTCATGCAACTATTGAAGTAGCCTCGGCCTCAGCA
TCAAATTTCACGACTAAACTAGAAGAGACTATTGATGTTACTCACAGGAATGACCCAAAC
CATCTGTCAGTATCACAGAATTTTGAAAGTGGCGCAAACTTCCATTCGGACGAGGACAGC
GGAAGGGGAGACAGTGATGTAGACGTAACCAGTAACAATCAAACGAAAGATACAGCGAAA
CTACAGAATCGAAATGTTCCCGTCTTCGGCATGGGACCCTTTTGTAATCACCAATGCAAA
CAGCTTGGTCATAGTGACAATTGTTGGATGCCACGGCCAGGCGAGAATACAAAAATTGTC
CCAAAACGTCAGACCAGTGTCCAGGCCGGAGAAAATACTCTCTCTATAACGAATCCCTCG
AACCATTTACGCCGATACAGTTCTAACGACTCTTGCCTAAATGAACGGCCTTGTCTATCC
AAACCACGCAGTCGTCATCCTCTACAGATTATCAACAACGGCACAAGAGAAATCTATGGT
TCTAATCGTTACTTGCCTCCTCACGAGATAAAATATGCATCATGCAAACTGCCATCTATC
AACCAAGTTAAATATGAAAGAAGCCTGTCATGTCGCAGCACTCCAACTAATTTCGAACCA
GCAGGTTCATTTTCATCAGCGACATGTACTAGATATTACGCGAGGAATTCGTCGCGAAAC
GACATGTGTATCAATCGCGGTTCTGCAACGAATCTTTCCGTTGTTCACGAAAAACGACCG
TTCTCTTTACGAAATGACAATTTATTACTCGAAAATCCTTCACGGAGTTACTTTAAAACT
AACAGCGAGGGTAGCTCTTGTAAAAACGTTAGGTTTGCCCCACCTGACATCGCTACAATC
AAAGACCACAACGCAGAAGAGTCGCCAAAAGAGGATATGGTTACTGGTGAAGCTTCACAA
AAAGTTATCCTAAGATGTTCAAGCGTATCTTCACCGACGAAAACAAGTTCAAACACTCAG
CCTTCTGTTGGTTGTAGATATAGCATGCAAGATACTTGTGATATTATTAATGATATTGAT
CGATTA
| SMART |
Cadherin (IPR002126) - T[49-147] 0.45 - T[173-258] 1.1E-16 - T[282-367] 1.4E-15 - T[397-491] 1.5E-13 - T[530-612] 7.7E-23 - T[637-730] 0.015 |
| PRINTS |
Cadherin (IPR002126) - T[87-106] 5.1E-27 - T[260-289] 5.1E-27 - T[458-470] 5.1E-27 - T[472-491] 5.1E-27 - T[491-504] 5.1E-27 - T[561-587] 5.1E-27 - T[596-613] 5.1E-27 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[143-260] 1.04E-17 - T[248-371] 6.15E-23 - T[362-485] 2.71E-15 - T[481-618] 4.45E-25 - T[607-726] 5.42E-13 |
| Pfam |
Cadherin (IPR002126) - T[156-250] 7.0E-9 - T[265-360] 3.5E-10 - T[381-484] 4.5E-10 - T[502-604] 1.0E-14 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[248-258] . - T[357-367] . - T[602-612] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCD18_HUMAN | 28.355 % | 303 | 3.58E-86 |
| PCD19_HUMAN | 29.335 % | 276 | 7.56E-77 |
| PCD10_HUMAN | 28.765 % | 265 | 1.39E-73 |