- Transcript 'KH2012:KH.C2.292.v2....' >
- Transcript 'KH2012:KH.S562.5.v1....' >
- Transcript 'KH2012:KH.C9.73.v1.A...' >
- Clone 'cilv022o06' >
- Transcript 'Haaura.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S39.g01027.04.t
Possible name(s)
H2AFJ; HIST1H2AA; HIST2H2AB
Gene model
Location
S39 [118,923 / 119,295]
Amino acid sequence
Length: 124
>Haaura.CG.MTP2014.S39.g01027.04.p
MSGRGKGGKVKSKSKTRSSRAGLQFPVGRVHRLIRKGNYAERVGAGAPVYLAAVLEYLSA
EVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT
AHKS
Nucleotide sequence
Length: 372
>Haaura.CG.MTP2014.S39.g01027.04.t
ATGTCTGGACGTGGCAAAGGTGGAAAAGTGAAGTCGAAGTCGAAGACACGATCTTCCCGA
GCTGGATTGCAATTTCCTGTAGGACGTGTGCATAGGCTTATCCGCAAAGGCAATTACGCC
GAGCGGGTAGGGGCTGGTGCTCCGGTTTATCTGGCTGCAGTGCTCGAATATTTGAGCGCT
GAAGTGTTGGAACTAGCTGGAAATGCAGCTCGTGATAACAAGAAGAGCAGAATTATCCCA
CGTCATCTCCAACTAGCCATCAGAAATGACGAGGAGTTGAACAAATTACTCGGCGGTGTT
ACAATCGCTCAGGGTGGTGTGTTACCAAACATTCAAGCTGTTCTACTACCAAAGAAGACT
GCTCATAAGAGT
| Gene3D |
Histone-fold (IPR009072) - T[2-124] 1.9E-65 |
| SMART |
Histone_H2A (IPR002119) - T[3-122] 3.2E-80 |
| Pfam |
Histone_H2A/H2B/H3 (IPR007125) - T[9-88] 1.2E-16 |
| PRINTS |
Histone_H2A (IPR002119) - T[13-35] 1.8E-55 - T[42-57] 1.8E-55 - T[57-70] 1.8E-55 - T[71-85] 1.8E-55 - T[99-117] 1.8E-55 |
| SUPERFAMILY |
Histone-fold (IPR009072) - T[15-119] 1.39E-45 |
| CDD |
Histone_H2A (IPR002119) - T[16-119] 3.44946E-68 |
| ProSitePatterns |
Histone_H2A_CS (IPR032458) - T[21-27] . |
| Pfam |
Histone_H2A_C (IPR032454) - T[91-124] 8.2E-21 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| H2AJ_HUMAN | 91.736 % | 222 | 8.71E-77 |
| H2A1A_HUMAN | 90.083 % | 222 | 1.27E-76 |
| H2A2B_HUMAN | 89.6 % | 222 | 1.18E-76 |