Aniseed - Transcript Card

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S3.g00119.01.t

Possible name(s)

LAMA1; LAMA2; LAMA3

Gene model

Haaura.CG.MTP2014.S3.g00119

Location

S3 [132,331 / 137,392]

Sequences

Amino acid sequence

Length: 255

>Haaura.CG.MTP2014.S3.g00119.01.p
LYPSVVNLAAHADITVNATCGETEPEYFCKLVEHVNKLFRRKRSQCGTCYSKSPDTSEHH
NISFVIDGRGDTWWQSPSISQGYQYHWVTITLDLKQIFQVAYVILKSSNSPRPGNWILEK
SLDNVSWHPWQYFALSSSECRKRYPIRTTRTGSPRFRADDEVVCTSFFSKILPLNNGEIH
ISLINGRPTTNNPSQKLLEFTSARFIRFRFQKIRTLHGDLMTIMKNSAKDVDPYVTRRVS
YLYVLVTTSFTVRK*

Nucleotide sequence

Length: 765

>Haaura.CG.MTP2014.S3.g00119.01.t
TTGTACCCATCAGTGGTGAACCTTGCAGCACATGCAGATATCACGGTTAACGCGACGTGC
GGTGAAACAGAGCCGGAATATTTTTGTAAATTGGTTGAACATGTAAACAAACTCTTTCGT
CGAAAAAGAAGTCAGTGTGGGACTTGCTATTCAAAGAGCCCGGATACAAGTGAACATCAC
AACATCTCGTTTGTAATTGATGGGCGTGGAGACACCTGGTGGCAGAGCCCAAGTATAAGC
CAAGGATATCAGTATCACTGGGTTACGATAACTCTAGATTTGAAACAGATATTTCAAGTT
GCCTACGTCATATTGAAATCTTCCAATTCCCCAAGGCCAGGGAATTGGATTCTTGAGAAA
TCCCTCGACAACGTATCCTGGCATCCCTGGCAATATTTTGCTCTGTCATCGAGCGAATGC
AGAAAGAGATATCCAATCCGGACTACGCGGACCGGCTCTCCGAGATTCAGGGCAGATGAC
GAAGTTGTCTGCACTTCGTTCTTCTCTAAAATTCTACCGTTAAACAATGGCGAGATTCAC
ATTTCTTTGATCAACGGACGACCGACAACCAATAATCCTTCGCAAAAACTGTTGGAATTC
ACCTCGGCAAGATTCATTCGTTTCCGTTTCCAGAAAATTCGAACCCTTCACGGAGATCTG
ATGACGATCATGAAAAATTCTGCCAAGGACGTAGATCCATACGTCACAAGAAGAGTAAGT
TATTTATATGTTCTTGTAACCACTAGTTTCACAGTACGGAAATAA

InterProScan

Gene3D	Laminin_N_sf (IPR038684) - T[1-244] 6.2E-66
SMART	Laminin_N (IPR008211) - T[1-241] 1.4E-83
ProSiteProfiles	Laminin_N (IPR008211) - T[1-253] 44.682
Pfam	Laminin_N (IPR008211) - T[2-227] 9.4E-64
SUPERFAMILY	Galactose-bd-like_sf (IPR008979) - T[53-133] 2.84E-9

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
LAMA1_HUMAN	59.751 %	304	7.47E-95
LAMA2_HUMAN	59.336 %	300	2.06E-93
LAMA3_HUMAN	42.857 %	179	2.31E-51