Aniseed - Transcript Card

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S3.g00119.02.t

Possible name(s)

LAMA1; LAMA2; LAMA3

Gene model

Haaura.CG.MTP2014.S3.g00119

Location

S3 [135,201 / 137,392]

Sequences

Amino acid sequence

Length: 202

>Haaura.CG.MTP2014.S3.g00119.02.p
MSETQFFDILLPEWAIIADYCVFAPFMWRENRRPATNTVSVAKIFQVAYVILKSSNSPRP
GNWILEKSLDNVSWHPWQYFALSSSECRKRYPIRTTRTGSPRFRADDEVVCTSFFSKILP
LNNGEIHISLINGRPTTNNPSQKLLEFTSARFIRFRFQKIRTLHGDLMTIMKNSAKDVDP
YVTRRVSYLYVLVTTSFTVRK*

Nucleotide sequence

Length: 606

>Haaura.CG.MTP2014.S3.g00119.02.t
ATGAGTGAAACACAGTTTTTCGATATCCTGTTACCGGAATGGGCGATAATAGCGGATTAT
TGTGTCTTTGCGCCTTTCATGTGGCGAGAAAATCGTCGACCCGCGACGAACACGGTTTCG
GTGGCGAAAATATTTCAAGTTGCCTACGTCATATTGAAATCTTCCAATTCCCCAAGGCCA
GGGAATTGGATTCTTGAGAAATCCCTCGACAACGTATCCTGGCATCCCTGGCAATATTTT
GCTCTGTCATCGAGCGAATGCAGAAAGAGATATCCAATCCGGACTACGCGGACCGGCTCT
CCGAGATTCAGGGCAGATGACGAAGTTGTCTGCACTTCGTTCTTCTCTAAAATTCTACCG
TTAAACAATGGCGAGATTCACATTTCTTTGATCAACGGACGACCGACAACCAATAATCCT
TCGCAAAAACTGTTGGAATTCACCTCGGCAAGATTCATTCGTTTCCGTTTCCAGAAAATT
CGAACCCTTCACGGAGATCTGATGACGATCATGAAAAATTCTGCCAAGGACGTAGATCCA
TACGTCACAAGAAGAGTAAGTTATTTATATGTTCTTGTAACCACTAGTTTCACAGTACGG
AAATAA

InterProScan

ProSiteProfiles	Laminin_N (IPR008211) - T[1-200] 27.006
SMART	Laminin_N (IPR008211) - T[5-188] 9.7E-19
Gene3D	Laminin_N_sf (IPR038684) - T[24-194] 2.3E-46
Pfam	Laminin_N (IPR008211) - T[38-174] 6.9E-34

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
LAMA1_HUMAN	60.131 %	210	4.89E-63
LAMA2_HUMAN	60.131 %	209	1.2E-62
LAMA5_HUMAN	43.506 %	127	6.43E-34