- Transcript 'KH2012:KH.C2.88.v3.A...' >
- Transcript 'KH2012:KH.C7.219.v1....' >
- Transcript 'KH2012:KH.C4.519.v2....' >
- Transcript 'Boleac.CG.SB_v3.S148...' >
- Transcript 'Haaura.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S3.g00128.02.t
Possible name(s)
PABPC1; TIA1; TIAL1
Gene model
Location
S3 [223,686 / 226,455]
Amino acid sequence
Length: 481
>Haaura.CG.MTP2014.S3.g00128.02.p
MQHPMTSTQGGLGMNQAMPANTSLQGGMSQQAQYAMGNMQNMMMSSAMGTFNSTPSSMNG
NSNPDDEAYPRTLYVGNLDPQVTESLILELFSVIGVCTKCNMIRDPTGMNDMYCFIEFQD
HNNAAAAITAMNGRKILGKEVKVNWATRPANKKDTSNHFHIFVGDLSPEVTSEDLRRAFT
HCGAISDAKVVRDMHTNASKGYGFVSFINRVDAQNAIESMRGQMLGCRQIRTNWATRKPG
APGKYGDGRQYQKLDYNTVLNQSSQTNCTVYVGGVQVGLTEMIMRSTFQNYGTIQEVRVF
PDKGYAFIRMSSHADAARAIVEVHGTTIEGNVVKCSWGKEGAGIPSYNNESSTQQRNNQA
TNQWNTADMWSSQHPQQQQQQQQAFGQWNGTQWSGYNQQQQQNAWGGWDSNQSQANLGQW
AAWSNMQQTPQQGGDGWGNNMQQANNAMNPQQQMMSSAWGAGDSQQPAAAQESATFTPQQ
*
Nucleotide sequence
Length: 1,443
>Haaura.CG.MTP2014.S3.g00128.02.t
ATGCAACACCCTATGACATCCACACAAGGAGGATTGGGAATGAATCAAGCAATGCCGGCG
AATACGTCGTTGCAAGGTGGAATGAGCCAGCAGGCCCAGTATGCCATGGGTAACATGCAA
AACATGATGATGAGCAGTGCCATGGGGACTTTCAACTCGACTCCAAGCTCAATGAACGGG
AACTCGAACCCCGACGATGAAGCTTACCCCAGAACTCTATACGTTGGAAACTTGGATCCT
CAAGTAACTGAAAGCCTGATTTTGGAGCTGTTTAGCGTCATTGGAGTATGCACCAAATGC
AACATGATTAGAGATCCCACTGGCATGAACGACATGTACTGCTTCATTGAATTCCAAGAC
CACAACAATGCAGCTGCTGCCATAACGGCCATGAATGGAAGGAAGATCTTGGGAAAGGAA
GTGAAAGTCAATTGGGCTACCAGACCAGCTAATAAGAAGGACACGAGCAACCATTTTCAC
ATCTTTGTTGGAGATCTTTCACCTGAGGTCACCTCGGAGGACTTGCGAAGGGCCTTTACC
CACTGCGGCGCGATTTCGGATGCGAAAGTAGTCCGAGACATGCATACCAATGCCTCCAAG
GGCTACGGTTTTGTTTCTTTTATTAACCGCGTGGACGCTCAGAATGCGATCGAGTCCATG
AGAGGACAGATGCTTGGATGCAGACAAATAAGAACCAATTGGGCAACAAGAAAGCCTGGG
GCTCCAGGGAAATATGGTGACGGCAGACAATATCAGAAACTGGACTACAACACTGTGCTC
AATCAATCTAGCCAAACAAACTGTACAGTGTACGTGGGTGGCGTTCAGGTTGGCCTGACC
GAAATGATCATGCGAAGCACTTTTCAGAACTATGGTACTATCCAGGAAGTCAGAGTGTTT
CCTGATAAAGGCTATGCCTTCATAAGGATGAGCTCGCACGCTGATGCCGCTCGTGCCATA
GTGGAGGTACATGGTACGACCATTGAAGGCAACGTTGTCAAGTGCTCATGGGGCAAAGAG
GGAGCTGGAATTCCGAGTTACAATAATGAATCTTCTACTCAGCAGCGGAACAATCAAGCG
ACCAATCAGTGGAATACTGCCGACATGTGGAGTTCCCAGCACCCGCAACAACAACAGCAG
CAACAGCAAGCCTTTGGACAGTGGAATGGAACCCAGTGGAGTGGATACAACCAACAACAG
CAACAGAACGCATGGGGTGGATGGGACAGCAATCAGTCGCAGGCAAACTTGGGACAATGG
GCAGCATGGAGCAACATGCAGCAGACGCCACAGCAAGGGGGTGACGGATGGGGCAACAAT
ATGCAGCAGGCGAATAATGCGATGAACCCACAGCAGCAAATGATGTCGAGCGCATGGGGC
GCCGGTGACAGTCAGCAGCCGGCTGCTGCGCAGGAGAGTGCAACTTTCACTCCTCAGCAA
TAA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[49-151] 1.3E-23 - T[152-249] 2.5E-26 - T[250-342] 4.5E-24 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[53-153] 8.33E-26 - T[153-252] 1.48E-27 - T[255-341] 2.42E-22 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[71-148] 17.063 - T[159-237] 18.257 - T[268-340] 15.102 |
| SMART |
RRM_dom (IPR000504) - T[72-144] 2.7E-21 - T[160-233] 5.4E-21 - T[269-336] 5.0E-16 |
| SMART |
RRM_dom_euk (IPR003954) - T[72-144] 0.01 - T[160-233] 0.78 - T[269-336] 0.81 |
| Pfam |
RRM_dom (IPR000504) - T[73-142] 5.0E-19 - T[161-231] 3.6E-20 - T[270-334] 2.3E-13 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TIAR_HUMAN | 64.26 % | 358 | 8.45E-121 |
| TIA1_HUMAN | 55.211 % | 357 | 1.28E-120 |
| PABP1_HUMAN | 29.964 % | 118 | 2.05E-28 |