- Transcript 'Cisavi.CG.ENS81.R54....' >
- Transcript 'KH2012:KH.C1.546.v3....' >
- Transcript 'Haaura.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S467.g05216.01.t
Possible name(s)
SEMA6A; SEMA6C; SEMA6D
Gene model
Location
S467 [1,097 / 21,844]
Amino acid sequence
Length: 913
>Haaura.CG.MTP2014.S467.g05216.01.p
MNEMVYSENGDIRMVAHVAQVCKNDKGGQHVLVRQWTTFVKSRLNCSLNGFYFDQLQDVS
EPVEVPVGDGSNTTETMVFAIFTTPDNAVPGSAVCSFRIKDIRKALFGHFKQDRTNGIGE
NNEPSEDRHPASCPVDGFSDIELQFLKSHPLLEDQAEGRLLTTQVGERWSTVNVDPRAGP
KRDWTVIFVGTFKGEIIRYLYPSDGVKNTVMLSKHAVYDPSECTLDNTHEDDKKKDMKLK
RILIDPQQNTLTAAFRHCVISLPLRTCSVHKCEQSCVASADPYCGWNNGHCVSYLSLSQN
LPQNIFSNAMYPKTDVDSLCPEKKEDTKPGSGLVDPAGTPDETDNGVDGKSGIVPSNTTD
SATISNVDVSAGEKTESPEAALSVASKPGYMEIHIGVVIGAVVLALVVGFLLCCCCIRCC
WRGEIEKSIESEINDSTLSLSLCKKTFNSIFSCLSPEPKRRSIPRDYESSTLMEPKKRHT
SGDSRRSEDLHDGKMVKLNGTHNQRPISQGPRTSRLNSSGSNGSQVMVPNGGSVTSHHGS
RPQSMMTNSTTSMSAKPVFNPNISSNRPSYTRQHSGKRSSDPVHNTDDYTNAPTLLADRK
AARNSTPGGMGYYPAISPSRSDFPSFLDSTGVDDVVENTTNTLQGVQEVIAAEIQRRSQE
VEPLENIPEEERPRHDSDDSGKGESPRNSLQNEEERANKIAPMPRPQTLEFGQNRQRRHR
LNSEPPNSTINMQAHPQYARQPVMRSISVRGPATTVQPINIARGQRSGSFSSQPSTPIGQ
SPPKYTVHPGSIPQSSRSDHNMIYSTMPTNPNGRNRAPPEAYRHGYDPHFVQTPPQYVRF
DQQMENVHPNNMSMQEKYSSLPSRGRTKRNAQQQQQQQQQQQQQQQQQQQLQQQQQQPQP
QFYVQQSQPAVPF
Nucleotide sequence
Length: 3,892
>Haaura.CG.MTP2014.S467.g05216.01.t
ATGGATACGACCAGAATTGTGTGGTTTTCCATGTACCTTGCATTACTAATCACGGAATGC
CAGGGATTGTTTCCAGATAATACTGCACCTATCACGAGAATAGGACGAGATGATGTCCCT
TACACGGTTTTCTCTCGCGACGACCAAGACAACTTCCGACTTCGTTATGTTCAAGACGTC
AAAGAGATGACATTAGCCGATAAGCGAGTGATTGCTGTCACAGCAAGTGAGGTAGATTTT
CATGACGTTCACGTCCCTTTGTTCAAAGTACAATACGTTTTGTCGACACTTATTCATTAC
TATTGTCTTACTAAGGCTTATCCTGGTCTATTTTTCGCCACACCTAGTAGGTACTACTAT
ATACTATACCCAGCGTTGAATTGTAAGCAAACTGGGAACAACAAAGTCTTTCAAAATTAC
TGTAGTCATTGTCAACATAATGTCCCCGAAAAGATCGCAAACAAGTGACTGCGGGAACAA
TTTGTACATCCTTGACAAAGACAAGTTCTCCTACAACTCCTCCGAGGATAGATTCTTACC
AATGGATATTATTACATGGAAGTCAGATAAAGCTACAGAAGAATTGTGCAAGATGAAAGG
CCAGTCTGCGGTAAGATATCATGAGTTTTCAAATTCTGCACTATTTCGTATACCTACGTC
ACGCGGGGGCGCATACGAAAAAATATGTGAAGCGTGTCGGCTTTGCATACAACATAATAT
GAAAATTGGTTAGCTGCAAACCCCAATCCCAACCGGAAAATTGCCACAATTATCTGCGTG
TACTCGAAGCTACAGACGACAATTCAAAGCTTCTACTTTGCGGAAGCAATTCTTACCATC
CTCGGTATAAGTACATTTCGATAGGAAAGCAAGGTCATGGGAAAAACAGTGATGTTCGTC
TCCGCTTAGGCAACGAGACCCGCTCGGGCACAGAAATTTGCGCTTTCGGACCAGATCAGA
CTGGTGTGAGTCTATTTCAAGATGGATCACTGTATTCTGCAACGGTGACAGAATTCAATG
GACGAACGACAGTAATCACTCGTCATTTTGGAACGAAGACACAATTACGCGTTCCCAAAT
TTGACACCAAGTTTTTAAACGAGCCACAGTTTATCAAACTTGCCGATGACGGTAAAAGAA
TTCTGATTTACATGAACGAAATGGTCTACAGTGAAAATGGTGACATCCGCATGGTGGCAC
ACGTCGCACAGGTATGTAAGAACGACAAAGGCGGCCAGCACGTGCTAGTACGACAATGGA
CAACATTTGTTAAATCTCGTTTGAACTGCTCGCTGAATGGATTCTACTTTGACCAGTTAC
AAGATGTGTCCGAACCTGTCGAAGTTCCGGTCGGCGATGGATCGAACACAACCGAAACTA
TGGTATTCGCTATCTTCACAACGCCCGATAATGCTGTGCCAGGATCCGCTGTCTGCTCTT
TCCGTATCAAGGATATACGGAAAGCCCTATTCGGTCATTTTAAGCAAGACAGGACCAATG
GAATAGGCGAAAACAACGAACCCTCTGAAGATCGTCATCCTGCTTCCTGTCCGGTAGACG
GATTCAGCGATATCGAGCTCCAGTTTTTAAAATCCCATCCTTTGCTGGAGGATCAAGCTG
AGGGTCGTCTTTTGACGACACAAGTTGGCGAACGATGGAGTACCGTCAATGTCGATCCCA
GAGCAGGTCCGAAGAGAGACTGGACCGTGATCTTCGTTGGCACGTTCAAAGGCGAAATAA
TACGCTATCTTTACCCATCTGATGGGGTGAAAAACACTGTTATGTTGTCAAAGCACGCAG
TATATGATCCATCTGAATGTACTTTGGATAACACACACGAAGACGACAAAAAGAAAGACA
TGAAACTGAAACGCATTTTGATAGACCCGCAACAGAACACCTTGACGGCTGCCTTCAGGC
ATTGTGTTATATCTCTACCACTGAGGACTTGCTCTGTACATAAATGTGAACAATCTTGCG
TCGCCTCTGCAGATCCCTATTGCGGCTGGAACAACGGGCACTGTGTTAGCTACCTCTCCC
TTTCTCAAAATCTGCCACAAAACATATTTTCGAATGCCATGTATCCCAAGACAGATGTAG
ACTCGCTTTGCCCAGAGAAAAAGGAGGACACTAAGCCGGGCTCTGGTCTAGTAGATCCCG
CAGGAACCCCGGATGAAACGGATAACGGAGTCGATGGGAAATCTGGGATAGTTCCTTCGA
ATACGACCGATTCTGCAACAATTTCGAACGTCGATGTCTCCGCCGGAGAGAAAACAGAGA
GTCCTGAAGCTGCGCTTTCAGTAGCTTCAAAGCCAGGCTATATGGAGATTCATATTGGCG
TGGTCATCGGAGCAGTTGTGCTCGCTTTGGTGGTCGGCTTCCTACTTTGCTGTTGCTGTA
TCAGATGCTGCTGGCGAGGAGAAATCGAGAAATCGATCGAATCCGAAATCAACGATTCAA
CACTTTCTCTCTCGCTTTGCAAGAAGACGTTCAATTCCATTTTCTCCTGTCTATCACCCG
AACCAAAACGGCGTTCGATTCCGAGAGATTACGAATCAAGCACACTAATGGAACCAAAGA
AACGTCACACATCGGGCGACAGCCGACGTTCAGAAGATTTGCATGATGGAAAAATGGTGA
AACTTAACGGAACCCACAATCAGCGTCCTATATCTCAAGGCCCTCGTACGTCTCGCCTCA
ACAGTAGCGGTAGCAACGGAAGCCAGGTCATGGTACCGAATGGGGGATCAGTTACTAGTC
ACCATGGCAGTAGACCTCAGTCCATGATGACCAACTCTACGACAAGTATGTCGGCGAAAC
CTGTGTTCAACCCGAATATTTCGTCTAATCGTCCGAGCTACACGCGTCAACATTCGGGTA
AGCGCTCTTCCGACCCAGTTCACAATACCGACGATTATACGAACGCTCCCACTCTGCTTG
CTGATAGAAAAGCCGCGAGAAATTCCACACCGGGCGGGATGGGATACTACCCGGCAATTT
CTCCGAGTCGATCCGATTTTCCGAGTTTTCTCGATAGCACCGGGGTCGACGATGTGGTTG
AGAACACGACCAATACCTTGCAGGGAGTCCAGGAGGTAATCGCTGCCGAAATCCAGAGGC
GATCGCAAGAAGTCGAGCCCTTGGAAAACATTCCGGAAGAAGAAAGACCGAGACATGATT
CTGACGACAGCGGAAAAGGCGAAAGTCCTAGAAATTCGCTGCAAAACGAAGAAGAAAGGG
CCAATAAGATAGCTCCTATGCCCCGACCACAGACATTAGAGTTCGGACAAAACAGACAGC
GTCGTCATAGACTGAATTCCGAACCGCCTAACAGTACGATCAACATGCAAGCGCATCCTC
AGTACGCCCGACAGCCTGTGATGCGTTCCATATCCGTACGCGGACCGGCCACGACAGTTC
AACCTATTAACATTGCCAGGGGCCAGCGTAGTGGGTCTTTTTCGTCCCAGCCATCGACGC
CAATCGGTCAATCACCACCCAAGTATACGGTTCATCCTGGCTCCATACCACAGTCTTCCA
GATCCGATCACAATATGATCTACTCGACTATGCCTACCAATCCAAACGGAAGAAACAGGG
CACCGCCCGAAGCATATCGACATGGCTACGATCCTCACTTTGTTCAAACTCCGCCCCAAT
ACGTACGATTTGATCAGCAAATGGAGAACGTACATCCAAATAATATGTCGATGCAAGAAA
AATATTCAAGTCTTCCATCACGAGGTAGAACGAAACGTAACGCTCAACAGCAACAGCAAC
AACAGCAGCAACAACAGCAACAACAACAGCAGCAACAACAACTACAGCAACAACAACAAC
AGCCTCAGCCACAGTTTTACGTTCAGCAGTCGCAGCCGGCTGTACCGTTTAA
| ProSiteProfiles |
Semap_dom (IPR001627) - T[1-264] 43.266 |
| SMART |
Semap_dom (IPR001627) - T[1-233] 0.0012 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[2-265] 5.0E-55 |
| SUPERFAMILY |
Semap_dom_sf (IPR036352) - T[7-270] 9.16E-48 |
| Pfam |
Semap_dom (IPR001627) - T[13-216] 6.8E-41 |
| PANTHER |
Semaphorin (IPR027231) - T[14-883] 4.6E-58 |
| SMART |
PSI (IPR016201) - T[266-321] 0.0072 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SEM6A_HUMAN | 30.735 % | 182 | 4.14E-47 |
| SEM6D_HUMAN | 35.948 % | 186 | 2.14E-48 |
| SEM6C_HUMAN | 35.855 % | 170 | 1.56E-43 |