- Transcript 'Haaura.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S496.g05382.01.t
Possible name(s)
CSDE1
Gene model
Location
S496 [4,726 / 11,408]
Amino acid sequence
Length: 1,100
>Haaura.CG.MTP2014.S496.g05382.01.p
MEWMNQSPFFNDHLPNSQSFRPNFGSSAGSIALTTKQKALITGQMGNRFENKEKPVTSHR
PLTRTTSCGVFNPPLRPSALNQHRALQRSTSYDTNRLNQSMPTLGSRSLGLSNSTSPAPS
GINTSSNGYRSRETGVIEKLLLSYGFIRCADREGRLFFHYSQFHGEAPSLHINDEVEFDV
SMDTRTGKPVAVQVVKLKKGTVVFEVYSEERILGEVASPAVPQGGPQPFMGTGSNGFKPG
ERGEIIPGGKYGSLCYDRMGEVFFLPYTVNDLTNKSIQLEAGDKVSFYIATEKRTGVLRA
RKITLVERAPPKRFTGIVTAMKESFGFIERADVVKEIFFHYSEVSNNVPDLHIGDHAEFS
IQERNGKEVATDVSLLPRGSVQLEEISNEIFIGTVEKPLPPKAPNKLQQTITSNNAGGDA
STLNISNKSTNGNGSLQTSQQPCLTLAGIIQYTTSLGESRKIRFGEKDRAANCLYTLRQG
DKVSFLTVSDKRNGQQRAAGVNLLLNETIDSNGEKRERGIVAAVKEGFGFIKCLERDSRL
FFHCCELLDPNHNVRMSDEVEFTVLNDPVAEKHRLHATRISILPKGTVIFHTVSDETYQG
IVELLPGSAAGANPDCLISPALGPNPGLISYEADQENHQIPFTMKEFMEWTDASVLSIGS
EVEFRICTVKRTSARNAVDIKLAKLAVSTSDMIRTIVSGLSTLPVTESSATSAVNHTTPR
TPIITPPMKMVPLIEDVTVSAEAFKLDPVPEKKTLFASSPKLSPSRPTVPLLTSVRTSNG
SNGLSSKLETALSPRSKDLSSEVKEEKMLGWISTLKETFGFIETSDHMSEIFFHFSELLD
SPEKYNVNTPVVYIKGVKDEKPCALQVTIANEKELTFKEDIDPTIYEGIVVKALKSANQT
QGMYHGTIEYKGNPLDTEAKQVLYSPISLNDRRDLVQSSDKVTFQICHDSVNNTSRAINV
TVKRDIIQATIESIKGEYGFINYEVKNADASSTGKLFFHMSEVREGADEMTTGTLVEFSV
IFNQRTGKHSASNIRCLESKRQRPMRLRVRSACIDQSGPVVTVIRQPKGPSDDKGFTLQR
HSSNNDSSEPDSMKAESSN*
Nucleotide sequence
Length: 3,300
>Haaura.CG.MTP2014.S496.g05382.01.t
ATGGAATGGATGAATCAGTCTCCCTTCTTCAACGATCACCTGCCCAATAGTCAATCCTTT
CGTCCGAACTTCGGAAGTTCAGCTGGGAGCATTGCCTTAACTACGAAACAAAAAGCTCTC
ATCACAGGACAAATGGGAAACCGATTTGAGAACAAAGAGAAGCCAGTTACTAGTCACAGA
CCACTTACAAGAACAACAAGCTGTGGAGTTTTCAATCCTCCCCTACGTCCTTCAGCACTC
AATCAACACAGAGCTCTGCAGCGCTCAACCAGCTATGACACTAACCGTCTAAATCAGTCC
ATGCCTACGCTTGGGTCACGGTCATTGGGACTGTCAAACTCTACTAGTCCCGCTCCCTCC
GGTATCAACACTTCAAGCAACGGTTACAGAAGTCGCGAAACTGGAGTTATAGAAAAGCTT
TTGTTATCATACGGGTTCATCCGTTGCGCTGACAGAGAAGGACGTCTATTCTTTCACTAC
AGTCAGTTTCATGGTGAAGCACCGTCCTTACATATCAATGATGAAGTGGAATTTGATGTT
TCCATGGACACAAGAACAGGCAAGCCAGTGGCTGTGCAAGTCGTCAAGTTGAAGAAAGGA
ACCGTGGTTTTCGAAGTTTATAGCGAAGAGCGAATTCTCGGCGAAGTCGCCAGCCCCGCA
GTCCCGCAAGGAGGCCCGCAACCGTTTATGGGAACAGGGTCAAACGGTTTCAAACCCGGC
GAAAGAGGAGAGATAATACCCGGGGGGAAATATGGTAGTCTGTGCTATGATAGAATGGGG
GAGGTCTTCTTCCTGCCATACACAGTCAATGACTTAACAAACAAAAGTATTCAGCTGGAG
GCAGGGGACAAAGTTTCGTTCTATATTGCCACAGAGAAAAGAACGGGAGTTCTCCGGGCA
CGTAAAATAACTTTGGTTGAGCGTGCGCCTCCGAAGCGATTCACTGGTATAGTGACTGCC
ATGAAAGAGTCATTCGGATTTATAGAAAGAGCAGATGTTGTCAAAGAGATATTTTTCCAC
TACAGCGAGGTTAGCAACAACGTCCCTGATCTGCATATTGGCGATCACGCCGAATTTAGT
ATCCAAGAAAGAAATGGCAAAGAAGTCGCTACAGACGTAAGTCTCCTTCCTCGTGGTTCT
GTTCAGCTGGAGGAGATTTCGAATGAAATCTTCATCGGAACCGTAGAAAAACCGCTTCCT
CCTAAAGCACCGAATAAATTGCAGCAAACTATCACTAGCAACAATGCAGGTGGAGATGCC
TCCACTCTCAATATCAGCAACAAATCAACAAATGGAAACGGCTCACTTCAGACAAGCCAG
CAACCATGTCTAACACTTGCTGGTATAATACAGTACACCACATCTCTCGGAGAATCAAGG
AAAATACGTTTCGGAGAGAAAGACAGAGCTGCTAATTGCTTGTACACATTACGTCAAGGC
GATAAGGTCTCCTTCCTCACTGTGTCTGACAAACGAAATGGCCAGCAAAGAGCAGCTGGC
GTTAATCTGCTGCTCAACGAAACTATTGATAGCAATGGGGAAAAAAGAGAACGGGGCATC
GTAGCCGCAGTAAAAGAAGGATTCGGCTTCATCAAATGCCTGGAACGAGACTCTCGTCTT
TTCTTTCACTGCTGCGAGTTGCTCGATCCCAATCATAATGTCAGAATGTCGGATGAGGTG
GAGTTCACTGTGCTGAATGACCCGGTTGCTGAAAAACACAGGCTGCATGCAACAAGGATC
TCTATACTACCTAAAGGAACTGTGATATTTCACACTGTCTCAGATGAAACCTACCAAGGA
ATTGTTGAACTGTTACCTGGATCAGCAGCTGGTGCAAACCCTGATTGCCTGATAAGTCCA
GCCCTTGGTCCAAATCCTGGATTAATAAGTTACGAAGCTGATCAGGAAAATCACCAGATT
CCGTTCACAATGAAAGAATTCATGGAGTGGACGGATGCTTCAGTACTCTCTATTGGTAGT
GAGGTTGAGTTCCGAATTTGCACAGTCAAGCGTACAAGTGCTAGAAATGCAGTTGACATC
AAGTTGGCAAAACTAGCTGTGTCTACCAGTGATATGATCAGGACCATTGTTAGCGGACTC
TCTACTTTACCAGTCACTGAGAGCTCTGCTACCTCTGCAGTCAATCACACAACTCCTAGA
ACCCCGATAATAACACCTCCGATGAAAATGGTTCCACTCATTGAAGATGTGACTGTATCT
GCCGAAGCATTCAAACTAGATCCCGTACCCGAGAAAAAAACACTGTTTGCGTCCAGTCCA
AAATTGTCCCCAAGCAGACCCACAGTTCCCTTACTCACGTCCGTCCGAACGTCCAATGGA
TCAAATGGGCTGTCGAGTAAACTGGAAACGGCACTTTCCCCAAGATCGAAGGACTTGTCA
TCCGAAGTCAAAGAAGAGAAAATGCTTGGCTGGATTAGTACACTGAAGGAAACTTTCGGT
TTCATAGAAACTTCCGACCACATGTCCGAAATATTTTTCCACTTCAGCGAGCTGCTGGAT
TCACCCGAAAAGTATAATGTCAATACTCCAGTTGTCTACATAAAAGGCGTCAAAGATGAA
AAACCTTGTGCTTTGCAAGTGACCATTGCTAACGAGAAAGAGCTCACGTTCAAAGAAGAT
ATTGATCCTACCATCTACGAAGGTATTGTAGTAAAAGCATTGAAATCTGCAAACCAGACT
CAGGGCATGTACCATGGTACGATAGAGTACAAAGGAAATCCTCTTGACACAGAAGCAAAG
CAAGTCCTCTATAGTCCAATAAGTTTGAATGACCGACGTGACCTTGTGCAATCGAGTGAT
AAGGTTACCTTCCAGATTTGCCACGACTCTGTTAACAACACCAGCCGAGCCATCAATGTT
ACCGTGAAACGTGATATTATACAAGCAACAATTGAAAGCATTAAAGGAGAGTATGGTTTT
ATCAACTACGAAGTCAAGAATGCCGATGCCAGCTCAACCGGGAAACTGTTTTTCCACATG
TCAGAGGTGAGAGAAGGGGCAGATGAAATGACCACTGGCACTCTGGTAGAATTCTCAGTC
ATCTTCAATCAGAGAACAGGTAAGCACTCGGCATCGAATATACGTTGCCTCGAATCAAAG
CGACAGAGGCCAATGCGGTTACGTGTCCGCAGTGCCTGTATTGATCAAAGTGGCCCGGTA
GTCACAGTCATTCGTCAGCCGAAAGGTCCTAGTGATGACAAGGGATTTACTCTGCAACGA
CATTCCAGCAACAATGATAGCTCTGAACCTGATAGCATGAAAGCTGAGAGCAGCAACTAA
| SUPERFAMILY |
NA-bd_OB-fold (IPR012340) - T[128-202] 2.79E-16 - T[311-380] 7.43E-14 - T[511-588] 1.7E-12 - T[806-872] 9.0E-10 - T[967-1037] 1.24E-9 |
| Pfam |
CSP_DNA-bd (IPR002059) - T[134-196] 1.4E-11 - T[315-374] 1.1E-13 - T[518-571] 9.4E-7 - T[810-868] 1.2E-5 - T[969-1035] 1.5E-6 |
| SMART |
CSD (IPR011129) - T[134-197] 1.4E-11 - T[315-376] 6.8E-12 - T[518-583] 7.8E-5 - T[809-870] 2.1 - T[968-1037] 0.053 |
| CDD |
CSP_DNA-bd (IPR002059) - T[144-196] 2.92577E-10 - T[315-375] 5.3882E-11 - T[819-869] 1.52613E-7 |
| ProSitePatterns |
Cold-shock_CS (IPR019844) - T[144-163] . - T[325-344] . - T[819-838] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CSDE1_HUMAN | 40.862 % | 362 | 1.64E-110 |