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TRANSCRIPT CARD

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  1. Clone 'cien34954'
  2. Clone 'cima8106213'
  3. Clone 'cien207329'
  4. Transcript 'Haaura.CG.MTP2014.S5...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S50.g01236.01.t

Possible name(s)

SNRNP35; SRSF8; TRA2A

Location

S50 [104,304 / 108,015]

Sequences

Amino acid sequence

Length: 464

>Haaura.CG.MTP2014.S50.g01236.01.p
DFRIQFITKLCTEGGEANLAAMTQFLPPNLLALFASRDPIPYKQPAVRLTWEKDHEKNPY
TGVSSIVSLFEDPTDTPAPTRGETKLEKKFRRIKEKTIIRANEIEEELKTWDPHNDKNAT
SDSFKTLFVSRINYDTSESKLRREFETYGRIRKINMVKDLAGKPRGYAFIEFEHERDMHS
AYKNADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGATRRGANEESLNESRRSEPTGN
ERLDEKKRDTHRSVSKESREKRTSRDRDRERHDRTDRNDRTERTDRNDRNRSDRKRDRDR
REDRPKDRSKERDKDRSRNKERDRDRKRHRDKSKERDRDGSRRKRSKERDRDRKGSERSS
KKESDDKVRAEIKKEPKNGDSQENNGMEEEDNQPPKTERFDDNAKIEQEIEEMNDSELLN
LFYRKPVMNWNGCFFLYKISLMLDMHLHTVYSVGFLVYTIRRN*

Nucleotide sequence

Length: 1,410

>Haaura.CG.MTP2014.S50.g01236.01.t
GATTTTCGGATTCAGTTTATTACGAAGCTGTGCACTGAAGGTGGGGAAGCTAATTTGGCA
GCTATGACGCAGTTTTTACCCCCAAATCTATTGGCTCTGTTTGCGTCAAGAGATCCTATT
CCTTATAAACAGCCAGCTGTACGGCTCACATGGGAAAAAGATCATGAGAAAAATCCCTAC
ACTGGAGTCAGTTCTATTGTTAGCTTGTTTGAAGATCCAACCGATACTCCTGCACCGACT
AGAGGTGAAACAAAGTTGGAAAAAAAGTTCAGACGAATCAAGGAGAAAACAATAATTCGT
GCAAATGAAATCGAAGAAGAACTAAAGACGTGGGATCCACATAACGATAAAAATGCAACC
TCGGACTCCTTTAAAACTTTGTTCGTGTCAAGAATAAACTATGACACGTCAGAATCAAAA
CTACGCAGGGAGTTTGAAACATATGGAAGAATTCGGAAGATAAACATGGTTAAGGATCTT
GCGGGAAAACCCCGTGGGTATGCATTCATCGAGTTTGAACATGAACGTGATATGCACTCT
GCCTATAAAAATGCCGATGGGAAAAAAATTGACGGACGTCGTGTACTGGTTGATGTCGAG
AGAGGCAGGACGGTCAAAGGCTGGCGTCCACGTAGATTGGGAGGGGGCTTGGGAGCAACA
AGGCGGGGAGCTAACGAAGAGAGCTTGAATGAATCCAGGCGATCAGAACCAACTGGGAAC
GAAAGGCTTGACGAGAAAAAAAGAGATACACATAGGAGTGTTAGTAAGGAGTCCAGAGAA
AAAAGAACTTCAAGGGACAGGGACCGTGAGAGACATGACAGAACTGACCGAAATGACAGG
ACTGAAAGAACTGACCGTAATGACAGAAATCGAAGTGACCGTAAAAGAGACCGGGATCGT
CGTGAAGACCGTCCTAAAGACAGATCAAAAGAGAGGGATAAGGACAGATCCAGAAACAAA
GAACGGGATCGTGATCGCAAACGTCACCGGGACAAATCTAAAGAGCGAGATCGTGATGGA
AGTCGTAGAAAAAGAAGTAAAGAGCGTGATCGTGACCGCAAAGGTTCAGAAAGAAGTAGT
AAAAAAGAAAGCGATGACAAAGTACGTGCCGAGATTAAAAAAGAACCTAAAAACGGTGAT
TCGCAGGAAAATAATGGCATGGAAGAGGAAGACAATCAACCACCTAAAACAGAACGTTTT
GATGATAATGCGAAGATAGAGCAGGAAATAGAAGAAATGAATGATTCTGAATTATTGAAT
CTGTTTTACAGAAAGCCAGTCATGAATTGGAATGGATGTTTCTTTCTTTATAAAATTTCA
TTGATGCTGGATATGCATTTGCATACAGTATATTCTGTAGGATTTCTCGTGTACACCATA
CGGAGAAATTGAAATACTGTCGTGCTGGTT

InterProScan

Pfam
U1snRNP70_N (IPR022023) - T[24-116] 5.7E-24
Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[112-236] 1.2E-33
SUPERFAMILY
RBD_domain_sf (IPR035979) - T[113-224] 1.22E-27
CDD
snRNP70_RRM (IPR034143) - T[124-213] 6.30803E-54
ProSiteProfiles
RRM_dom (IPR000504) - T[125-202] 18.751
SMART
RRM_dom (IPR000504) - T[126-198] 1.8E-22
Pfam
RRM_dom (IPR000504) - T[127-195] 6.8E-19

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
U1SBP_HUMAN 39.604 % 91.7 5.62E-21