- Clone 'cien34954' >
- Clone 'cima8106213' >
- Clone 'cien207329' >
- Transcript 'Haaura.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S50.g01236.01.t
Possible name(s)
SNRNP35; SRSF8; TRA2A
Gene model
Location
S50 [104,304 / 108,015]
Amino acid sequence
Length: 464
>Haaura.CG.MTP2014.S50.g01236.01.p
DFRIQFITKLCTEGGEANLAAMTQFLPPNLLALFASRDPIPYKQPAVRLTWEKDHEKNPY
TGVSSIVSLFEDPTDTPAPTRGETKLEKKFRRIKEKTIIRANEIEEELKTWDPHNDKNAT
SDSFKTLFVSRINYDTSESKLRREFETYGRIRKINMVKDLAGKPRGYAFIEFEHERDMHS
AYKNADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGATRRGANEESLNESRRSEPTGN
ERLDEKKRDTHRSVSKESREKRTSRDRDRERHDRTDRNDRTERTDRNDRNRSDRKRDRDR
REDRPKDRSKERDKDRSRNKERDRDRKRHRDKSKERDRDGSRRKRSKERDRDRKGSERSS
KKESDDKVRAEIKKEPKNGDSQENNGMEEEDNQPPKTERFDDNAKIEQEIEEMNDSELLN
LFYRKPVMNWNGCFFLYKISLMLDMHLHTVYSVGFLVYTIRRN*
Nucleotide sequence
Length: 1,410
>Haaura.CG.MTP2014.S50.g01236.01.t
GATTTTCGGATTCAGTTTATTACGAAGCTGTGCACTGAAGGTGGGGAAGCTAATTTGGCA
GCTATGACGCAGTTTTTACCCCCAAATCTATTGGCTCTGTTTGCGTCAAGAGATCCTATT
CCTTATAAACAGCCAGCTGTACGGCTCACATGGGAAAAAGATCATGAGAAAAATCCCTAC
ACTGGAGTCAGTTCTATTGTTAGCTTGTTTGAAGATCCAACCGATACTCCTGCACCGACT
AGAGGTGAAACAAAGTTGGAAAAAAAGTTCAGACGAATCAAGGAGAAAACAATAATTCGT
GCAAATGAAATCGAAGAAGAACTAAAGACGTGGGATCCACATAACGATAAAAATGCAACC
TCGGACTCCTTTAAAACTTTGTTCGTGTCAAGAATAAACTATGACACGTCAGAATCAAAA
CTACGCAGGGAGTTTGAAACATATGGAAGAATTCGGAAGATAAACATGGTTAAGGATCTT
GCGGGAAAACCCCGTGGGTATGCATTCATCGAGTTTGAACATGAACGTGATATGCACTCT
GCCTATAAAAATGCCGATGGGAAAAAAATTGACGGACGTCGTGTACTGGTTGATGTCGAG
AGAGGCAGGACGGTCAAAGGCTGGCGTCCACGTAGATTGGGAGGGGGCTTGGGAGCAACA
AGGCGGGGAGCTAACGAAGAGAGCTTGAATGAATCCAGGCGATCAGAACCAACTGGGAAC
GAAAGGCTTGACGAGAAAAAAAGAGATACACATAGGAGTGTTAGTAAGGAGTCCAGAGAA
AAAAGAACTTCAAGGGACAGGGACCGTGAGAGACATGACAGAACTGACCGAAATGACAGG
ACTGAAAGAACTGACCGTAATGACAGAAATCGAAGTGACCGTAAAAGAGACCGGGATCGT
CGTGAAGACCGTCCTAAAGACAGATCAAAAGAGAGGGATAAGGACAGATCCAGAAACAAA
GAACGGGATCGTGATCGCAAACGTCACCGGGACAAATCTAAAGAGCGAGATCGTGATGGA
AGTCGTAGAAAAAGAAGTAAAGAGCGTGATCGTGACCGCAAAGGTTCAGAAAGAAGTAGT
AAAAAAGAAAGCGATGACAAAGTACGTGCCGAGATTAAAAAAGAACCTAAAAACGGTGAT
TCGCAGGAAAATAATGGCATGGAAGAGGAAGACAATCAACCACCTAAAACAGAACGTTTT
GATGATAATGCGAAGATAGAGCAGGAAATAGAAGAAATGAATGATTCTGAATTATTGAAT
CTGTTTTACAGAAAGCCAGTCATGAATTGGAATGGATGTTTCTTTCTTTATAAAATTTCA
TTGATGCTGGATATGCATTTGCATACAGTATATTCTGTAGGATTTCTCGTGTACACCATA
CGGAGAAATTGAAATACTGTCGTGCTGGTT
| Pfam |
U1snRNP70_N (IPR022023) - T[24-116] 5.7E-24 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[112-236] 1.2E-33 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[113-224] 1.22E-27 |
| CDD |
snRNP70_RRM (IPR034143) - T[124-213] 6.30803E-54 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[125-202] 18.751 |
| SMART |
RRM_dom (IPR000504) - T[126-198] 1.8E-22 |
| Pfam |
RRM_dom (IPR000504) - T[127-195] 6.8E-19 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| U1SBP_HUMAN | 39.604 % | 91.7 | 5.62E-21 |