Aniseed - Transcript Card

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S50.g01236.01.t

Possible name(s)

SNRNP35; SRSF8; TRA2A

Gene model

Haaura.CG.MTP2014.S50.g01236

Location

S50 [104,304 / 108,015]

Sequences

Amino acid sequence

Length: 464

>Haaura.CG.MTP2014.S50.g01236.01.p
DFRIQFITKLCTEGGEANLAAMTQFLPPNLLALFASRDPIPYKQPAVRLTWEKDHEKNPY
TGVSSIVSLFEDPTDTPAPTRGETKLEKKFRRIKEKTIIRANEIEEELKTWDPHNDKNAT
SDSFKTLFVSRINYDTSESKLRREFETYGRIRKINMVKDLAGKPRGYAFIEFEHERDMHS
AYKNADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGATRRGANEESLNESRRSEPTGN
ERLDEKKRDTHRSVSKESREKRTSRDRDRERHDRTDRNDRTERTDRNDRNRSDRKRDRDR
REDRPKDRSKERDKDRSRNKERDRDRKRHRDKSKERDRDGSRRKRSKERDRDRKGSERSS
KKESDDKVRAEIKKEPKNGDSQENNGMEEEDNQPPKTERFDDNAKIEQEIEEMNDSELLN
LFYRKPVMNWNGCFFLYKISLMLDMHLHTVYSVGFLVYTIRRN*

Nucleotide sequence

Length: 1,410

>Haaura.CG.MTP2014.S50.g01236.01.t
GATTTTCGGATTCAGTTTATTACGAAGCTGTGCACTGAAGGTGGGGAAGCTAATTTGGCA
GCTATGACGCAGTTTTTACCCCCAAATCTATTGGCTCTGTTTGCGTCAAGAGATCCTATT
CCTTATAAACAGCCAGCTGTACGGCTCACATGGGAAAAAGATCATGAGAAAAATCCCTAC
ACTGGAGTCAGTTCTATTGTTAGCTTGTTTGAAGATCCAACCGATACTCCTGCACCGACT
AGAGGTGAAACAAAGTTGGAAAAAAAGTTCAGACGAATCAAGGAGAAAACAATAATTCGT
GCAAATGAAATCGAAGAAGAACTAAAGACGTGGGATCCACATAACGATAAAAATGCAACC
TCGGACTCCTTTAAAACTTTGTTCGTGTCAAGAATAAACTATGACACGTCAGAATCAAAA
CTACGCAGGGAGTTTGAAACATATGGAAGAATTCGGAAGATAAACATGGTTAAGGATCTT
GCGGGAAAACCCCGTGGGTATGCATTCATCGAGTTTGAACATGAACGTGATATGCACTCT
GCCTATAAAAATGCCGATGGGAAAAAAATTGACGGACGTCGTGTACTGGTTGATGTCGAG
AGAGGCAGGACGGTCAAAGGCTGGCGTCCACGTAGATTGGGAGGGGGCTTGGGAGCAACA
AGGCGGGGAGCTAACGAAGAGAGCTTGAATGAATCCAGGCGATCAGAACCAACTGGGAAC
GAAAGGCTTGACGAGAAAAAAAGAGATACACATAGGAGTGTTAGTAAGGAGTCCAGAGAA
AAAAGAACTTCAAGGGACAGGGACCGTGAGAGACATGACAGAACTGACCGAAATGACAGG
ACTGAAAGAACTGACCGTAATGACAGAAATCGAAGTGACCGTAAAAGAGACCGGGATCGT
CGTGAAGACCGTCCTAAAGACAGATCAAAAGAGAGGGATAAGGACAGATCCAGAAACAAA
GAACGGGATCGTGATCGCAAACGTCACCGGGACAAATCTAAAGAGCGAGATCGTGATGGA
AGTCGTAGAAAAAGAAGTAAAGAGCGTGATCGTGACCGCAAAGGTTCAGAAAGAAGTAGT
AAAAAAGAAAGCGATGACAAAGTACGTGCCGAGATTAAAAAAGAACCTAAAAACGGTGAT
TCGCAGGAAAATAATGGCATGGAAGAGGAAGACAATCAACCACCTAAAACAGAACGTTTT
GATGATAATGCGAAGATAGAGCAGGAAATAGAAGAAATGAATGATTCTGAATTATTGAAT
CTGTTTTACAGAAAGCCAGTCATGAATTGGAATGGATGTTTCTTTCTTTATAAAATTTCA
TTGATGCTGGATATGCATTTGCATACAGTATATTCTGTAGGATTTCTCGTGTACACCATA
CGGAGAAATTGAAATACTGTCGTGCTGGTT

InterProScan

Pfam	U1snRNP70_N (IPR022023) - T[24-116] 5.7E-24
Gene3D	Nucleotide-bd_a/b_plait_sf (IPR012677) - T[112-236] 1.2E-33
SUPERFAMILY	RBD_domain_sf (IPR035979) - T[113-224] 1.22E-27
CDD	snRNP70_RRM (IPR034143) - T[124-213] 6.30803E-54
ProSiteProfiles	RRM_dom (IPR000504) - T[125-202] 18.751
SMART	RRM_dom (IPR000504) - T[126-198] 1.8E-22
Pfam	RRM_dom (IPR000504) - T[127-195] 6.8E-19

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
U1SBP_HUMAN	39.604 %	91.7	5.62E-21