- Transcript 'KH2012:KH.L123.1.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S4...' >
- Transcript 'KH2012:KH.L123.1.v1....' >
- Transcript 'Haaura.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S52.g01256.01.t
Possible name(s)
HMGB1; HMGB2; HMGB3
Gene model
Location
S52 [15,734 / 16,560]
Amino acid sequence
Length: 201
>Haaura.CG.MTP2014.S52.g01256.01.p
MGRKDPNKPRGKMTAYAFFVQTCRQEHKKKHPDEQVVFAEFSKKCAERWQGMTTKEKKIF
VDMANRDKVRYDREMEGYTPPAGDAKKIVKRKKDPNAPKRPQSAFFLFCADRRADIKKIN
PEFTVGDIAKCLGKQWSETTPEIKTKYEENGKIEKEKYLKVMEKYRAQQKKEAEGAKRQK
KESSSSSGSGSSSDSDQESD*
Nucleotide sequence
Length: 603
>Haaura.CG.MTP2014.S52.g01256.01.t
ATGGGTAGAAAAGATCCGAACAAGCCACGCGGTAAGATGACAGCGTATGCTTTTTTTGTT
CAAACTTGCCGCCAAGAGCATAAGAAGAAACACCCCGATGAACAAGTGGTGTTCGCAGAA
TTTTCTAAAAAATGCGCAGAGAGATGGCAGGGTATGACTACAAAGGAGAAAAAGATTTTC
GTTGACATGGCCAACCGAGACAAGGTACGATATGACAGAGAAATGGAAGGCTATACTCCC
CCTGCTGGTGATGCTAAAAAAATAGTGAAAAGAAAAAAGGATCCCAATGCACCCAAGCGA
CCACAATCTGCATTTTTCCTGTTCTGTGCAGACCGTAGGGCTGACATTAAGAAAATCAAT
CCCGAATTTACTGTTGGAGATATTGCTAAATGTCTCGGAAAGCAGTGGTCTGAAACAACT
CCCGAAATCAAGACAAAATATGAAGAAAACGGAAAGATCGAGAAAGAAAAATATCTCAAG
GTGATGGAAAAGTATAGGGCACAACAGAAAAAGGAAGCAGAGGGAGCAAAGAGGCAGAAG
AAGGAGTCGTCCTCTTCCTCCGGCTCCGGAAGCTCAAGTGATAGCGACCAAGAGAGCGAT
TAG
| Gene3D |
HMG_box_dom_sf (IPR036910) - T[1-80] 1.1E-31 - T[81-183] 4.6E-25 |
| SUPERFAMILY |
HMG_box_dom_sf (IPR036910) - T[3-82] 1.18E-24 - T[85-168] 1.19E-24 |
| Pfam |
HMG_box_dom (IPR009071) - T[6-78] 5.9E-23 - T[98-166] 6.3E-20 |
| SMART |
HMG_box_dom (IPR009071) - T[8-80] 9.7E-21 - T[97-167] 1.3E-19 |
| ProSiteProfiles |
HMG_box_dom (IPR009071) - T[9-79] 16.141 - T[98-166] 17.788 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HMGB1_HUMAN | 57.803 % | 193 | 1.27E-62 |
| HMGB2_HUMAN | 58.382 % | 191 | 4.89E-62 |
| HGB1A_HUMAN | 54.335 % | 179 | 3.19E-57 |