- Transcript 'Haaura.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S57.g01395.01.t
Possible name(s)
NR1I2; NR1I3; VDR
Gene model
Location
S57 [83,354 / 89,796]
Amino acid sequence
Length: 557
>Haaura.CG.MTP2014.S57.g01395.01.p
MKTVGRTGLSLSRLRQDSPEDEGKTKDKICVVCGDIATGTHFAAMTCEGCKGFFRRSMKK
CTQFTCAFENHCTINKSNRKHCQACRLQKCLAVGMNSNLIMSEESVNRKRELIRTNREKR
ALMRLKKEQEEVDQREKVFELSPQPVVQMTPEDKCLIKMLLDGHYSSYDFSYEDYETFRG
RQHIAPPNVEEIKTSHVTLAWLMANTEEDSSRPQEEKPGKSASKVRSSSKKDNKVEHPKR
VKGKILIPYNSPVECGDLSDTFSSLHGVSQPPVGQQDGAVGRQSDAQDSFYSDSSTSMPS
PQNIRLGEQELNQYKCDMADQAATGMMFEDSKDALTDSGVDSLLYLQGLFMNQGLMDEKT
HSLFQHFCDIMTWGIKKVIEFCKCIPEFQELSTVDQINLLRGGCLEMLVLRSYFAFASDG
NKYMSDKFQYSPEDFLQAGASTEFVDQYTNVHMRMRKMKLKVEEICLLIGLVLFSPDRPG
IQDHGKVEAMQKRIAQALRAYEYTNKDPEKACVIYSELLLLLPVLRTINVLFSNTILTLK
GSKENDFNPLILEVNN*
Nucleotide sequence
Length: 1,671
>Haaura.CG.MTP2014.S57.g01395.01.t
ATGAAAACCGTAGGTCGAACGGGTCTATCGCTGAGCAGGTTGAGGCAAGATTCCCCTGAG
GATGAAGGCAAAACAAAGGATAAAATATGCGTGGTATGCGGGGATATCGCTACAGGAACG
CATTTTGCCGCCATGACATGTGAAGGGTGTAAAGGATTTTTCCGAAGGTCTATGAAAAAA
TGCACCCAGTTTACCTGCGCTTTCGAGAACCATTGCACCATAAATAAGTCGAACAGAAAA
CACTGCCAAGCGTGCCGACTGCAGAAATGTCTCGCCGTTGGTATGAATTCCAACCTGATA
ATGAGCGAAGAAAGCGTGAACAGAAAACGTGAACTCATTCGAACGAACAGGGAAAAGAGG
GCTCTTATGAGGTTGAAGAAAGAGCAAGAGGAAGTTGATCAACGGGAAAAAGTTTTCGAG
TTGTCGCCACAGCCTGTTGTACAGATGACACCTGAAGACAAATGTCTGATTAAAATGCTT
TTGGATGGCCACTACTCGAGCTATGACTTCAGCTATGAAGACTACGAAACGTTCCGTGGC
AGACAGCATATCGCTCCACCAAATGTCGAAGAGATCAAGACGTCACATGTTACCCTCGCT
TGGCTCATGGCAAACACAGAGGAAGACTCGAGTCGCCCGCAGGAGGAAAAGCCGGGGAAA
AGTGCGAGCAAAGTCAGATCGTCAAGTAAAAAAGACAATAAAGTTGAACATCCTAAGAGA
GTGAAAGGTAAAATTTTGATTCCTTATAATTCCCCGGTCGAATGCGGTGACTTGTCAGAT
ACGTTCAGCTCTCTGCACGGGGTTTCGCAGCCGCCCGTTGGCCAGCAAGACGGTGCGGTC
GGGAGACAGTCGGACGCTCAAGATTCATTCTATTCAGATTCATCAACAAGCATGCCATCA
CCGCAAAACATCAGGCTAGGTGAGCAGGAATTGAATCAGTACAAATGTGATATGGCCGAT
CAAGCTGCAACTGGGATGATGTTTGAAGATTCCAAAGATGCCTTGACAGACTCTGGAGTC
GATTCCTTGTTGTATCTGCAAGGATTGTTTATGAATCAAGGTCTGATGGACGAAAAGACG
CATTCGTTATTTCAACATTTCTGCGATATCATGACATGGGGAATCAAGAAGGTGATTGAA
TTTTGCAAATGTATACCGGAATTCCAAGAGCTATCTACAGTTGATCAAATCAATCTGCTT
CGAGGAGGATGTCTTGAGATGCTTGTCTTACGTTCCTACTTTGCTTTTGCTTCCGACGGT
AACAAGTACATGTCGGATAAATTTCAATATTCGCCAGAGGACTTCTTGCAAGCTGGTGCA
AGTACGGAGTTTGTTGATCAATATACAAACGTACACATGAGAATGCGCAAGATGAAGCTC
AAGGTGGAAGAGATCTGTCTTCTGATCGGTCTTGTGCTTTTCTCTCCCGATCGGCCCGGC
ATACAAGATCATGGGAAGGTTGAGGCAATGCAAAAAAGAATTGCTCAGGCGCTGAGAGCA
TATGAATACACTAACAAGGATCCGGAGAAGGCTTGTGTCATATATTCTGAACTTCTCTTG
CTATTGCCTGTGCTGAGAACAATCAACGTTCTATTTTCAAACACGATCCTGACATTGAAA
GGCAGCAAAGAAAATGACTTCAACCCTCTTATACTGGAAGTTAACAACTAA
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[20-132] 8.5E-31 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[27-102] 18.686 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[27-98] 4.6E-32 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[29-96] 8.1E-28 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[30-56] . |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[30-46] 1.4E-15 - T[46-61] 1.4E-15 - T[79-87] 1.4E-15 - T[87-95] 1.4E-15 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[91-101] 1.4E-16 - T[370-391] 1.4E-16 - T[391-407] 1.4E-16 - T[458-473] 1.4E-16 - T[517-534] 1.4E-16 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[352-554] 4.72E-53 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[359-532] 1.3E-23 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[369-529] 1.4E-37 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| VDR_HUMAN | 43.575 % | 147 | 4.07E-39 |
| NR1I3_HUMAN | 39.521 % | 121 | 2.02E-30 |
| NR1I2_HUMAN | 40.625 % | 124 | 8.29E-31 |