- Transcript 'KH2012:KH.C1.333.v1....' >
- Transcript 'Haaura.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S587.g05843.01.t
Possible name(s)
SOX14; SOX2; SOX21
Gene model
Location
S587 [25,387 / 26,926]
Amino acid sequence
Length: 451
>Haaura.CG.MTP2014.S587.g05843.01.p
MLAVDSQAGWMQIPYPPGTGVPVVHTTSHLPPPPPISGDGSIMQTDLKPIYSTSSQISPM
NSQMHHMSGIQHQVVGSATAGSKSSQEQRVKRPMNAFMVCSCFITPVDNIPPIPHFHKVW
SRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEGDKRPFIDEAKRLRALHMKEHPDYKYR
PRRKTKMMKKDKYGSTILPSSTSSAVATSIGRSPLPNSLDYQHLNGYGPYSTMISQDPYS
TQGYGVPGNQSAVGHLTQRYDMPMYYPSYTAAPTIPTMGNPGVSHLGGYHGPPTSYSIGP
PTLPGTPPYSNVLHQPHVPTVKSPDTSPGGIGHQTPSCHSGSSPGQTPIAGQPQCPPQAQ
AGQIQSMISMYLPHSEHAGVTPVPSSSPAMDNSRLASMQPAHYSIPLTSGVHIPHMHTMS
NIRDSREGELYTWNSIIAAEFLCIICIVCV*
Nucleotide sequence
Length: 1,353
>Haaura.CG.MTP2014.S587.g05843.01.t
ATGTTAGCTGTCGATTCACAAGCCGGTTGGATGCAGATTCCATACCCACCAGGAACTGGG
GTCCCAGTTGTTCATACTACTTCCCATTTACCACCCCCACCTCCGATTTCCGGAGATGGG
TCCATCATGCAAACGGATCTGAAGCCGATATATTCAACTTCAAGCCAAATATCGCCGATG
AACAGCCAAATGCATCACATGTCAGGGATACAACACCAGGTTGTTGGTTCGGCAACGGCG
GGCAGCAAATCCTCTCAGGAACAGAGGGTTAAGCGGCCAATGAATGCGTTTATGGTATGT
TCATGTTTTATTACTCCAGTTGACAATATTCCGCCCATTCCTCATTTTCACAAGGTTTGG
TCACGTGGTCAACGGAGAAAAATGGCGCAAGAAAATCCTAAGATGCATAATTCAGAAATA
TCAAAGCGACTAGGTGCTGAATGGAAATTACTTTCCGAGGGAGACAAAAGGCCGTTCATC
GACGAAGCAAAACGTCTGCGAGCATTGCATATGAAAGAGCACCCAGATTACAAATACAGA
CCAAGAAGAAAAACAAAAATGATGAAAAAAGATAAGTACGGAAGTACAATACTGCCATCC
TCTACGTCTTCAGCCGTCGCAACTTCAATCGGTAGATCACCCCTGCCAAATAGTCTTGAC
TATCAGCACTTAAATGGATATGGCCCGTATTCAACAATGATTTCTCAAGATCCATATTCA
ACTCAAGGTTATGGAGTTCCTGGAAACCAAAGTGCCGTTGGTCATCTTACTCAAAGATAC
GATATGCCTATGTATTATCCATCTTACACAGCAGCACCGACCATTCCAACTATGGGAAAT
CCAGGGGTTTCTCATTTAGGCGGGTATCATGGTCCTCCAACTTCTTACTCCATTGGACCA
CCAACATTACCTGGCACACCACCGTATTCCAACGTCTTGCACCAACCTCACGTTCCTACT
GTAAAATCTCCAGATACGAGTCCCGGCGGAATTGGACATCAAACTCCAAGTTGCCATTCT
GGATCGAGTCCCGGTCAAACACCAATTGCCGGACAACCACAATGTCCTCCACAAGCGCAA
GCCGGACAAATACAAAGCATGATAAGTATGTATCTACCACATAGTGAGCATGCTGGAGTA
ACCCCTGTTCCATCTAGTAGTCCTGCAATGGATAATTCCAGATTGGCGTCCATGCAACCT
GCGCACTATTCCATCCCACTTACGAGTGGTGTACATATTCCACATATGCATACGATGTCA
AATATTCGGGATTCAAGGGAAGGGGAGTTATATACTTGGAATTCAATTATTGCAGCTGAG
TTTCTTTGTATCATTTGCATAGTTTGTGTGTAA
| SUPERFAMILY |
HMG_box_dom_sf (IPR036910) - T[80-182] 2.39E-21 |
| Gene3D |
HMG_box_dom_sf (IPR036910) - T[87-185] 5.9E-29 |
| SMART |
HMG_box_dom (IPR009071) - T[89-179] 4.0E-19 |
| Pfam |
HMG_box_dom (IPR009071) - T[119-178] 6.3E-20 |
| ProSiteProfiles |
HMG_box_dom (IPR009071) - T[119-178] 17.634 |
| Pfam |
SOX_fam (IPR022097) - T[179-242] 1.8E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SOX2_HUMAN | 42.475 % | 172 | 3.86E-50 |
| SOX21_HUMAN | 70.755 % | 150 | 1.94E-42 |
| SOX14_HUMAN | 71.429 % | 152 | 1.56E-43 |