Aniseed - Transcript Card

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S5.g00164.01.t

Possible name(s)

CCNA1; CCNB1; CCNB2

Gene model

Haaura.CG.MTP2014.S5.g00164

Location

S5 [13,436 / 15,558]

Sequences

Amino acid sequence

Length: 445

>Haaura.CG.MTP2014.S5.g00164.01.p
VCGALAVRILFLRDISTLFEATMTSLATTRNVLTNNFDQENPGKSKGGAIIKKRTAAPVT
RSAFVALSNNVTGQRVSQKGNLKPELKKPLIRQAAAANLKAKSNDQLKRELKALPKSQTI
LKVKEAKIQNGSTSPTPMEMGTPNDKLKLLQKNIFDRADKPEVEDIDENDTENPQLCSEF
VNDIYQYMLYLEGEFPVKKHYLKDTTLKPRMRSILVDWLFQVHHRFQLLQETFYLTIAIL
DRFLQLEPVARTKLQLAGVTAMLISSKYEEMYAPEVNDFVYITDQAFTRSQILQMEIVML
KTLDFDLGRPLPLHFLRRNSKAGQVDANQHTLAKYLMELSMVDYEMCHVAPSKVAAAALC
LSIKLLEDTDWTPTLEHYSQYSQAQLWPVVSHLAKNLKSAETNTYLQAIRTKYSSHKAFK
IAQIAEVNSSLVIELSEKAASITL*

Nucleotide sequence

Length: 1,335

>Haaura.CG.MTP2014.S5.g00164.01.t
GTGTGTGGAGCCCTTGCAGTTCGTATTCTCTTCCTTCGAGATATCAGTACTCTGTTTGAA
GCAACAATGACGAGCCTGGCCACAACAAGAAATGTTTTAACTAACAACTTCGATCAAGAA
AATCCTGGCAAATCAAAAGGAGGAGCCATCATTAAAAAGAGAACAGCGGCACCAGTAACC
AGATCTGCATTTGTTGCTTTGAGCAATAATGTGACTGGTCAACGAGTTTCTCAAAAGGGC
AATTTGAAACCAGAATTAAAGAAACCTTTGATAAGGCAAGCAGCTGCTGCCAACTTAAAA
GCAAAATCCAACGATCAACTGAAACGCGAGTTAAAAGCCCTTCCGAAGAGTCAAACTATC
CTAAAAGTTAAAGAAGCAAAAATCCAAAATGGATCGACGAGTCCAACGCCGATGGAGATG
GGTACTCCAAATGACAAGCTCAAGCTCCTTCAGAAAAACATATTTGACAGAGCCGACAAA
CCAGAGGTCGAGGACATTGACGAGAATGATACAGAAAATCCTCAGCTCTGCTCAGAATTT
GTCAATGATATTTATCAATACATGTTGTACCTGGAAGGGGAGTTTCCGGTGAAAAAACAT
TACCTGAAAGACACTACTTTGAAACCACGAATGCGTTCAATCCTTGTCGATTGGTTGTTT
CAGGTTCATCACAGGTTTCAGTTATTGCAGGAAACCTTTTATCTCACAATAGCTATCCTG
GATAGATTCCTGCAGTTGGAGCCTGTTGCTAGAACAAAATTACAACTGGCTGGTGTCACA
GCAATGCTGATTTCTTCAAAATACGAGGAAATGTATGCTCCAGAGGTCAATGATTTTGTG
TACATCACTGATCAAGCATTCACCAGATCCCAGATTTTGCAAATGGAAATTGTCATGCTG
AAAACCTTGGATTTTGATTTAGGTCGTCCACTCCCTTTGCACTTCTTGAGACGTAATTCC
AAAGCTGGGCAGGTTGATGCCAATCAACATACTCTCGCAAAATATTTAATGGAATTGTCA
ATGGTAGATTATGAGATGTGTCACGTCGCTCCATCCAAAGTGGCTGCAGCAGCGCTTTGT
CTTTCCATCAAGCTTCTTGAAGACACCGATTGGACACCAACATTAGAACATTACAGCCAG
TATTCACAAGCACAGTTGTGGCCTGTGGTGAGTCACTTAGCAAAAAACCTGAAATCTGCA
GAAACAAATACCTACCTTCAAGCTATTCGCACAAAATACAGCAGTCACAAAGCTTTTAAA
ATTGCTCAGATAGCGGAGGTGAATTCCTCATTGGTCATAGAATTGTCCGAGAAGGCAGCT
AGCATTACGCTTTGA

InterProScan

SUPERFAMILY	Cyclin-like_sf (IPR036915) - T[172-307] 7.38E-48 - T[310-426] 2.31E-36
Pfam	Cyclin_N (IPR006671) - T[183-307] 4.4E-43
CDD	Cyclin-like (IPR013763) - T[211-300] 1.04827E-20 - T[308-385] 4.25181E-16
ProSitePatterns	Cyclin_N (IPR006671) - T[212-243] .
SMART	Cyclin-like (IPR013763) - T[217-301] 2.4E-23 - T[314-395] 8.2E-19
SMART	Cyclin_C-dom (IPR004367) - T[310-427] 1.1E-33
Pfam	Cyclin_C-dom (IPR004367) - T[310-424] 3.8E-33

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
CCNB1_HUMAN	51.246 %	315	5.33E-104
CCNB2_HUMAN	50.307 %	330	2.22E-110
CCNA1_HUMAN	40.486 %	170	9.47E-48