- Clone 'AHC0AAA217YM18' >
- Transcript 'Phfumi.CG.MTP2014.S2...' >
- EST 'FF933432.1' >
- Transcript 'Cisavi.CG.ENS81.R79....' >
- Transcript 'Haaura.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S625.g06008.01.t
Possible name(s)
SCN1A; SCN2A; SCN9A
Gene model
Location
S625 [22,656 / 31,573]
Amino acid sequence
Length: 1,564
>Haaura.CG.MTP2014.S625.g06008.01.p
MVVIFLGSFYLINLILAVVAMAYEEQHQLVAMEEERKTTLMQKKRDEIDALLTEVHDAEM
KLESRRASVVCTDSSPASSTGSLLSMYRRKSSVINVESGKACGRQTSVKSISKAGHHNGN
LTKTPFSDILIGTETTSADSKTPSVSFSLKNEAPPTGRRQTNPQIPEIVVNSFTSPHTPS
QEFDGEELSKRIQEELNRQRSQPQYQSKFTNLDGHYNSGTVVDRNGVVTLAQTTEHPAGG
PHISVLLPEVIIESAHDSETFKSSPDCEMICMDSLKPYSRSRATSIDLLGEPELAMLKKR
AMSQASIMTAELDKQDRKCSPCWYKFTNIFCIWNCCGCWNYIHRICKIICEDPFLDLFIT
ICIVVNTAFMTAEYQPMEESYARILEVANLVFTVIFTAEMVLKLVGMQPFQYFQDPWNCF
DSVIVSFSLLEYALQSVEGLSVLRTFRLMRVFKLAKSWPTLNMLIKIIGNSMGSLGNLTL
ILIIVLFIFAVVGMQLFRERYQEAELAGNLNMRWHMKDFGHSFLIVFRILCGEWIETMWD
CLRWGGDISGLCVPVFLLVQVVGNLVVLNLFLALLLSSFLADNFVNEDEEPNAIQLSMIR
VNKFLAIAKVKVNAAKATLLDSCRKKLVIGLDSKLMTQPHCNDINRDRMANTGNGLTDGQ
KILYNAPINQNEKPMTEKPKICFEATESAAIKHRKSTTLAVTWSPSKMKVPRADGESDFE
VPDSDDQSLDDESDYMSSARSSRSGTLSMDSRSDFEGVETSLPEKNTEEEEDVPAPCWPN
KWKERVACCDPVVDEGLCLVWWNMRKICYRIIEHAWFESFIILMIMLSSGALAFEDVYLK
DKIGLQRVLKYADRIFTYVFIFEMLLKWVGYGFKKYFTNAWCWLDFLIVGVSLISLIAEA
LGMDQIGSIRSLRTLRALRPLRAMSRFEGMKVVVNALVGAIPSIFNVLLVCLIFWLIFSI
MGVNFFAGKFRKCLNTTSGISLPAENFTLYGVTYPEINSTVCKYIHENVTDDIMWRNSKI
NFDNAFSGYLALLQIATYKGWMEIMYDAVDVTYTDKQPIFENSVGYYFYFVAFILFGSFF
TLNLFIGVIIDNFSQQKKKLGGQDIFMTEEQRKYYNAMKKLGSKQPQKPVPRPKNELQAW
VFDIVVHQTFEIAIMILIVTNMFTMMIEYHDMPQNLMDVLEYINYVFIAIFTGECLLKPT
LFRIIRLARIGRILRLIRGAKGIRTLLFALMMSLPALFNIALLLVLVMFIYSIFGMSQFA
YVHRGDGIDDIFNFETFPNSFLCLFMITTSAGWAGLLSPIMDSDAPDCNILLQNDNPNGR
GDCGNPKIGIIFFVTYLIMTFLIVVNMYIAIILENFGVATEESADPLGEDDFEMFYEIWE
RFDPKATQFIAYEHLSDFVDNLDLPLKVPKPNFDTLIAMDLPMVMGDRLHCLDVLFALTK
RVLGESDALEGLRSQMEDKFMEANPSKVSYEPITTTLRRKQEEMSAVIIQRSWRRYRIRH
AVHKASRLFLGLNLLHDDPIENSDQETVNNDSLHPDFLHQDATSSNYDRRTSAGFLAEEN
TYS*
Nucleotide sequence
Length: 4,692
>Haaura.CG.MTP2014.S625.g06008.01.t
ATGGTGGTCATATTTCTCGGGTCTTTCTATCTGATCAACCTTATCCTGGCTGTCGTAGCT
ATGGCATACGAAGAGCAACACCAGTTAGTGGCGATGGAAGAAGAGCGAAAGACGACGCTT
ATGCAAAAGAAAAGGGATGAAATAGATGCGCTTCTAACGGAGGTTCACGACGCTGAAATG
AAATTAGAGAGCAGGAGAGCCAGTGTGGTGTGCACAGATTCTTCGCCAGCGTCATCTACA
GGATCTCTGCTTTCGATGTACCGTCGCAAAAGCTCAGTAATAAATGTAGAGAGTGGCAAA
GCATGCGGGCGGCAAACAAGTGTTAAGTCTATCAGCAAGGCTGGCCACCATAATGGAAAT
TTAACCAAGACACCGTTTAGTGACATTCTAATTGGAACGGAAACAACAAGTGCTGATAGT
AAGACTCCATCTGTCAGTTTTTCTCTTAAAAACGAAGCTCCACCGACTGGCAGGCGACAA
ACGAATCCACAAATTCCCGAGATAGTCGTCAATTCGTTCACTTCCCCGCACACGCCCTCC
CAAGAATTTGACGGAGAAGAACTTTCGAAGAGAATTCAGGAAGAACTGAATCGTCAAAGA
AGTCAACCACAATATCAATCAAAATTCACCAACTTAGACGGTCATTACAATTCCGGAACA
GTGGTGGATCGGAATGGAGTTGTTACATTAGCGCAGACTACTGAACATCCTGCCGGCGGT
CCTCATATTTCTGTGCTTCTACCTGAGGTTATTATAGAATCGGCACACGATTCAGAAACA
TTCAAGTCGTCACCCGATTGCGAAATGATATGCATGGATAGCCTGAAGCCTTATTCACGT
TCCCGTGCAACATCCATAGATTTGTTGGGTGAGCCAGAACTAGCAATGCTCAAAAAAAGA
GCCATGAGCCAAGCGTCTATTATGACAGCAGAACTAGACAAACAGGACAGAAAATGCAGT
CCGTGCTGGTACAAATTTACAAATATCTTCTGCATATGGAATTGTTGCGGCTGTTGGAAT
TATATCCACAGAATTTGCAAAATTATATGCGAAGATCCGTTCCTGGATTTGTTCATAACG
ATATGTATAGTTGTCAATACTGCCTTCATGACAGCAGAATACCAACCAATGGAAGAGTCA
TACGCGAGAATCCTAGAGGTTGCAAATCTGGTTTTCACAGTTATATTTACTGCGGAAATG
GTTTTAAAACTAGTAGGAATGCAACCCTTCCAATACTTTCAAGACCCATGGAATTGCTTC
GATTCTGTCATTGTATCATTTTCTCTTCTTGAATATGCACTACAATCGGTGGAAGGACTT
TCTGTACTGCGCACCTTTCGTCTGATGAGGGTATTCAAGCTTGCAAAGTCGTGGCCGACT
CTGAACATGTTAATCAAAATTATTGGAAATTCGATGGGATCTTTGGGAAATCTTACTTTG
ATTTTGATTATCGTGTTATTCATATTTGCTGTAGTCGGAATGCAACTGTTTAGGGAGAGA
TACCAGGAAGCCGAATTAGCTGGGAATCTCAATATGCGGTGGCACATGAAAGATTTTGGT
CATTCGTTTTTGATTGTGTTTCGTATTTTGTGCGGTGAATGGATTGAAACCATGTGGGAT
TGCTTGAGATGGGGAGGCGATATAAGTGGTTTATGCGTTCCAGTATTCTTGTTGGTACAA
GTTGTTGGAAATCTAGTGGTCCTAAATCTATTCCTTGCTTTGCTGTTGAGTTCGTTCCTC
GCGGATAATTTTGTGAATGAGGATGAGGAACCAAATGCAATTCAGTTATCGATGATACGA
GTGAATAAATTCTTAGCAATAGCAAAAGTAAAAGTAAATGCGGCGAAGGCGACCTTACTG
GATTCATGCAGGAAAAAGCTTGTGATTGGACTGGACAGTAAGCTGATGACACAACCTCAC
TGTAACGATATCAATAGAGATCGCATGGCAAATACAGGGAATGGATTGACTGACGGACAA
AAAATACTTTATAATGCACCGATAAATCAAAACGAAAAACCAATGACGGAAAAGCCTAAA
ATTTGTTTTGAAGCTACTGAAAGCGCAGCTATTAAACATCGCAAGTCCACCACTCTAGCA
GTAACGTGGTCGCCGAGCAAAATGAAAGTTCCAAGAGCTGACGGAGAATCTGATTTCGAG
GTCCCAGACAGTGACGATCAGTCCCTCGACGATGAGAGTGATTACATGTCGAGTGCACGA
AGTTCCAGAAGTGGTACACTATCCATGGATTCGAGATCAGACTTCGAAGGAGTAGAAACA
TCTTTACCAGAAAAAAATACCGAGGAAGAGGAAGATGTACCAGCTCCATGCTGGCCTAAT
AAATGGAAAGAAAGAGTGGCTTGTTGCGATCCCGTTGTTGACGAAGGATTATGTTTAGTG
TGGTGGAACATGCGTAAAATATGCTATCGCATTATAGAGCACGCTTGGTTCGAAAGTTTC
ATTATTTTGATGATCATGCTTAGCAGTGGAGCTCTGGCCTTTGAAGACGTGTATTTGAAA
GATAAAATAGGCCTTCAACGCGTTCTCAAATACGCAGATCGAATCTTTACTTACGTCTTC
ATATTCGAGATGCTGCTGAAGTGGGTTGGCTATGGTTTTAAAAAATACTTCACGAATGCG
TGGTGTTGGCTGGACTTTCTGATTGTTGGGGTGTCACTGATAAGCCTTATTGCTGAAGCG
TTGGGCATGGATCAGATTGGTAGCATAAGATCACTGCGAACCTTGAGAGCACTGAGACCA
CTACGGGCCATGTCAAGATTCGAGGGAATGAAGGTAGTAGTGAACGCCCTAGTCGGAGCT
ATTCCATCAATCTTCAATGTGCTCTTGGTGTGCCTCATTTTCTGGCTAATATTTTCGATC
ATGGGTGTTAATTTCTTCGCGGGAAAGTTTAGAAAATGTCTCAACACAACCTCAGGGATA
TCATTACCTGCTGAGAACTTCACCCTATACGGTGTCACTTACCCAGAGATTAACAGTACC
GTTTGTAAATACATACATGAAAACGTAACAGACGATATCATGTGGAGGAACAGCAAAATA
AACTTTGATAATGCTTTTTCCGGATATCTCGCCCTGCTACAGATTGCAACATACAAGGGC
TGGATGGAAATCATGTACGATGCAGTGGATGTGACATATACTGACAAACAACCAATATTT
GAGAATAGTGTTGGATACTATTTTTACTTCGTCGCATTTATCCTGTTTGGAAGCTTCTTC
ACTCTGAATCTATTTATTGGTGTCATCATTGATAACTTCAGTCAGCAAAAGAAGAAACTT
GGCGGACAAGACATATTCATGACCGAAGAACAAAGGAAATACTACAATGCAATGAAAAAA
CTAGGGTCAAAACAGCCACAAAAGCCTGTCCCAAGACCAAAAAATGAACTACAAGCATGG
GTATTCGACATAGTAGTCCATCAAACATTTGAAATCGCCATCATGATTCTGATTGTGACT
AACATGTTCACAATGATGATAGAATATCACGATATGCCTCAAAATCTGATGGATGTCTTG
GAATATATAAATTATGTATTCATCGCTATATTTACCGGAGAATGTTTGCTAAAGCCCACA
TTGTTTCGGATTATTCGTTTGGCCCGAATTGGTCGTATTTTAAGACTTATTCGAGGAGCA
AAGGGAATTCGTACACTTCTCTTCGCCCTGATGATGTCACTTCCAGCTCTCTTCAACATT
GCTCTGTTGCTTGTGCTTGTGATGTTTATTTACTCCATATTCGGTATGTCTCAATTTGCA
TACGTTCATCGTGGCGATGGAATTGATGATATTTTCAATTTTGAAACGTTTCCGAATTCT
TTTTTGTGTCTGTTCATGATAACAACTTCTGCAGGCTGGGCTGGTTTGCTGAGCCCTATA
ATGGATTCTGATGCGCCGGATTGTAACATTCTTTTGCAAAATGACAATCCTAACGGTAGA
GGGGATTGTGGCAATCCGAAGATAGGAATCATTTTCTTCGTCACGTATCTAATAATGACC
TTCCTCATCGTCGTGAATATGTATATTGCCATTATACTTGAAAATTTTGGTGTTGCTACT
GAAGAAAGTGCTGATCCTTTGGGAGAAGATGATTTTGAGATGTTCTATGAAATCTGGGAG
CGATTTGATCCGAAAGCAACCCAGTTCATTGCGTATGAACATTTATCAGACTTTGTGGAC
AACCTAGATTTACCTCTTAAAGTTCCCAAGCCTAATTTCGACACGTTGATAGCAATGGAC
CTTCCGATGGTGATGGGCGATCGTTTACATTGCTTAGATGTTCTTTTTGCTTTAACTAAA
CGCGTGTTGGGTGAATCGGATGCGCTGGAAGGTCTTCGTTCACAAATGGAAGACAAGTTC
ATGGAAGCAAATCCATCGAAAGTATCTTACGAACCAATCACAACGACATTACGTCGTAAG
CAAGAAGAAATGTCCGCTGTTATCATTCAAAGATCTTGGAGACGCTATCGAATTCGTCAC
GCAGTTCATAAGGCTTCTCGGTTATTTCTCGGTCTAAATTTATTACATGATGATCCGATT
GAAAATAGCGATCAAGAAACCGTAAATAACGACAGCTTGCATCCGGATTTCTTACACCAA
GATGCGACCAGTAGCAACTATGATAGAAGAACTAGCGCAGGCTTTCTAGCAGAGGAAAAT
ACGTACAGTTAG
| Gene3D |
Volt_channel_dom_sf (IPR027359) - T[343-463] 1.7E-32 - T[805-928] 6.4E-29 - T[1138-1201] 5.6E-14 |
| Pfam |
Ion_trans_dom (IPR005821) - T[353-579] 6.7E-54 - T[814-1099] 1.1E-64 - T[1147-1198] 1.5E-8 - T[1200-1363] 1.2E-32 |
| Pfam |
Na_trans_assoc (IPR010526) - T[588-810] 9.2E-17 |
| PRINTS |
Na_channel_asu (IPR001696) - T[1335-1354] 2.5E-12 - T[1370-1383] 2.5E-12 |
| SMART |
IQ_motif_EF-hand-BS (IPR000048) - T[1481-1503] 0.0058 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SCN1A_HUMAN | 53.997 % | 1365 | 0 |
| SCN2A_HUMAN | 53.252 % | 1368 | 0 |
| SCN9A_HUMAN | 51.239 % | 1384 | 0 |