- Transcript 'Moocci.CG.ELv1_2.S62...' >
- Transcript 'Haaura.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S6311.g11077.01.t
Possible name(s)
COL21A1; COL24A1; COL4A1
Gene model
Location
S6311 [214 / 1,726]
Amino acid sequence
Length: 504
>Haaura.CG.MTP2014.S6311.g11077.01.p
LQGPPGLPGKGIKGDCGPKGPPGNPGNPGVSIPGPKGELGEPGPPGTFDYEELKQFPRDS
MMGEKGEQGIQGQKGDSLIDTVTGPPGPPGIGVKGEKGMTGESGPPGAPGRILADGTNEV
IGLPGPMGPKGEPGIEITGPQGPKGEIGEKGMTGGVGSAGEPGVEGPQGPKGEPGVGLIG
RNGEPGISIKGERGEPGPPGVPGGSDSSEGDKLVDSGGLKSGGTGPTGIPGPPGIPGLMG
PQGNSGIPGQKGEIGRMGPAGPQGRPGVRGSAGRTIRGPRGPTGSVGPKGERGVGLPGSP
GPPGPPGHTGYVGETSINVQSQQAGGNCCNQQKVAFMAGLSCNFQGHYERIAFDTILTNI
GSAYSEKSGCFIAPASGLYTFHVHILRCQNGGPLFMHLMRNKEMISSGTNQDVRFETTST
SAVLQLRKGDVMWVRLRQGTVYGHTPSHYSTFSGYAVSLDEAVDSSAISWSRADAVSYSL
RKPRSKYLTDPGSDGTESSIQKG*
Nucleotide sequence
Length: 1,512
>Haaura.CG.MTP2014.S6311.g11077.01.t
TTGCAGGGACCGCCTGGGCTGCCGGGCAAAGGTATCAAAGGTGATTGCGGCCCCAAAGGA
CCTCCAGGGAACCCAGGAAATCCGGGAGTCAGTATCCCAGGCCCGAAGGGTGAACTGGGA
GAGCCGGGACCTCCAGGAACCTTCGATTACGAGGAGCTGAAACAATTTCCAAGGGATTCG
ATGATGGGGGAAAAAGGGGAACAAGGCATCCAGGGTCAAAAAGGTGACTCTTTGATTGAC
ACCGTGACAGGACCACCTGGACCACCAGGAATCGGAGTCAAAGGCGAGAAGGGAATGACA
GGGGAGTCCGGACCCCCAGGTGCCCCTGGTCGAATCTTAGCAGATGGTACAAACGAAGTC
ATAGGGTTGCCAGGACCCATGGGACCCAAGGGAGAGCCCGGAATTGAGATAACAGGGCCC
CAAGGTCCTAAAGGTGAGATAGGTGAAAAGGGCATGACTGGCGGTGTTGGTTCAGCCGGC
GAACCGGGCGTTGAAGGACCGCAAGGACCGAAGGGAGAGCCGGGAGTCGGTTTAATAGGC
CGAAATGGTGAACCAGGAATTTCAATTAAAGGAGAACGTGGTGAGCCAGGACCTCCAGGT
GTCCCCGGAGGATCCGATTCCTCTGAAGGTGATAAATTAGTTGACTCGGGTGGCCTTAAA
AGCGGAGGAACAGGTCCGACCGGGATCCCCGGACCCCCCGGAATACCTGGGTTAATGGGA
CCACAAGGCAACAGTGGAATTCCAGGCCAGAAGGGAGAGATTGGACGAATGGGGCCAGCC
GGTCCTCAGGGTCGACCAGGCGTTCGAGGCAGTGCAGGAAGAACAATTAGGGGGCCCAGG
GGGCCTACTGGATCAGTTGGACCAAAGGGGGAACGAGGGGTCGGGTTACCAGGATCTCCG
GGTCCCCCTGGCCCTCCGGGACATACGGGATACGTCGGAGAAACAAGTATAAACGTTCAA
TCCCAACAGGCAGGAGGAAACTGCTGCAATCAGCAAAAAGTTGCATTTATGGCCGGGCTT
TCTTGCAACTTTCAAGGCCATTACGAACGGATTGCTTTCGACACGATTCTCACCAACATA
GGGAGCGCTTACAGCGAAAAATCGGGATGTTTTATCGCCCCCGCGAGCGGACTCTACACT
TTTCACGTTCATATACTACGCTGTCAAAACGGTGGACCGCTGTTCATGCATCTCATGCGA
AACAAAGAGATGATCAGTTCTGGAACGAACCAGGACGTCAGATTCGAAACTACAAGTACG
AGCGCGGTTTTACAGCTGCGAAAGGGTGACGTAATGTGGGTGAGGTTACGACAGGGCACT
GTATACGGTCATACGCCTTCGCATTATTCGACTTTTTCCGGATACGCTGTTTCACTCGAC
GAAGCCGTGGACTCTAGCGCTATTTCGTGGTCTAGGGCCGACGCTGTAAGCTATTCATTA
AGGAAACCAAGAAGTAAATATTTAACTGACCCCGGAAGCGATGGAACGGAGAGCAGTATA
CAAAAAGGCTAA
| Pfam |
Collagen (IPR008160) - T[222-273] 7.6E-8 |
| Gene3D |
Tumour_necrosis_fac-like_dom (IPR008983) - T[327-465] 6.7E-34 |
| SMART |
C1q_dom (IPR001073) - T[327-460] 8.6E-16 |
| ProSiteProfiles |
C1q_dom (IPR001073) - T[329-463] 24.165 |
| SUPERFAMILY |
Tumour_necrosis_fac-like_dom (IPR008983) - T[333-456] 2.05E-26 |
| Pfam |
C1q_dom (IPR001073) - T[335-455] 3.5E-23 |
| PRINTS |
C1q_dom (IPR001073) - T[344-370] 2.8E-11 - T[371-390] 2.8E-11 - T[416-437] 2.8E-11 - T[448-458] 2.8E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COLA1_HUMAN | 42.105 % | 103 | 2.86E-23 |
| COOA1_HUMAN | 39.617 % | 110 | 3.19E-25 |
| CO4A1_HUMAN | 42.378 % | 100 | 2.94E-22 |