- Transcript 'Haaura.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S63.g01476.02.t
Possible name(s)
THBS1; THBS2; THBS3
Gene model
Location
S63 [47,045 / 65,051]
Amino acid sequence
Length: 1,294
>Haaura.CG.MTP2014.S63.g01476.02.p
MKILYLTVLIAVSLTVVASDLSTKAHDVFEMTGLHGRMRDRNFNRAIKKIRGYDEFVPQA
YRFRRPVSELNLKASDENFRLLALDMSNNNQFVLVMSMKNDNKKRGTLIAIRPKDEFAGS
TDYLEIVCDPAEDYLSVFASIDGDKMAYNFETAGVKVGVEDPVWTNLTLHVSMETVTLFH
GCRYVGQFTLQRSIFQVFDYNQKALLLATGYGKGQRDYRGSLERIRFYVGASLSEILRQE
EGCSDRDLAPTNNGASKSRQTSEARAPTVSSAFPPNNDNMMCGIPCSIWSDFFHRRRAEP
AIGKPATSITFPETEPKSQSCWDQSHRYEHGEQWSRDECQSCNCSNGRVTCMVAECPPLH
CIDVIKMEGECCAVCSETADPYSEWSDWTPCSVTCGLGQEQRGRACDGVHFECTLTTKES
KTCVRTPCDVKVKMDGRWSPWAPWNGCSVTCGEGHSTRVRLCNAPSPQLGGKECVGESRE
VTTCYEPHCPIDGEWGPYSAFTPCTASCGNGTKTRNRQCDNPAPKYGGNPCVGEPKETTH
CYERPCPIDGRWSLWSKYGPCSATCGTGQKTRNRECNNPEPKYGGKQCEGQRSDVKDCRG
IECPIDGKWGPYTPFTRCSATCGQGFRKRARVCNNPAPLHGGKPCAGDSGQIESCIEKSC
PINTCRKHPCYRGVTCTPFDDGTFVCGSCPEGMQGNGIKCIDIDECSLVPDACFHYEDKH
RCQNQHGGYICLPCPEGYKGTRPSGVGVEYATEHKQQCKISNPCTDGSNPCPGNSECIYL
DPTMSPPFMCKCHPGFSACPSCKGLVCSEDSDLDGWPDQEASCERENATIKCHMDNCPTL
PNSGQENADKDDEGDACDLDDDDDGVQDARDNCPLSFNPTQYDSDDDRVGDVCDNCPFLR
NPGQIDTDGDGLGDDCDPDLDGDDILNGEDNCKYVSNKEQKDRDSDGVGDECDNCPKVEN
RDQGDIDDDLVGDACDTDRDRDMDGWQDNRDNCPFIANSAQTDHDQDGIGDSCDPDDDDD
GILDEEDNCRLIFNPDQLDTDGNGRGDVCEHDFDGDGVPDFEDACYANAKIQKTDFSVFD
RVKLDPSGTAQIDPNWVIRHKGKEIIQTVNCDPGLAISRDTFEGVDFDGTFFVNTGNDDD
YAGFVFGYQSSSRFYVLMWKQVSQSYWKSYPSHAMGMAGLQLKVVESKTGPGEELRNALW
HTGDTAGQVRTLWQDPTSQGWNNHNAYRWRLNHRPSTGEIRVVMHKGKDLLVDSGRIVDK
TYAGGRMGMFIFSQEMVFYSDMEYKCNDAPIEY*
Nucleotide sequence
Length: 4,312
>Haaura.CG.MTP2014.S63.g01476.02.t
ATGAAGATATTGTATCTAACTGTACTTATAGCCGTGTCTCTCACGGTAGTCGCATCGGAC
CTCAGTACGAAGGCCCACGATGTATTTGAAATGACAGGACTGCATGGCCGAATGAGAGAT
AGAAATTTCAACAGGGCTATTAAAAAAATTCGTGGATACGATGAATTCGTACCGCAAGCT
TACAGATTTCGTCGCCCGGTGAGCGAACTCAATTTGAAAGCATCTGACGAAAATTTTCGT
CTACTCGCGCTCGATATGAGCAACAACAACCAATTCGTTTTGGTAATGTCAATGAAGAAC
GACAATAAGAAAAGGGGAACTCTGATAGCGATCAGACCCAAAGACGAATTCGCTGGCTCT
ACTGATTATCTGGAGATCGTCTGCGACCCAGCTGAAGACTATCTCTCTGTATTCGCATCG
ATTGACGGGGACAAAATGGCATACAACTTCGAAACAGCCGGTGTAAAAGTGGGAGTGGAG
GACCCAGTCTGGACCAATCTTACGCTACACGTTTCTATGGAAACAGTGACCCTCTTCCAC
GGATGTCGCTACGTAGGCCAATTCACTCTACAACGTTCGATTTTCCAAGTGTTTGACTAT
AACCAGAAGGCATTGCTGTTGGCGACAGGGTATGGAAAAGGCCAAAGAGATTATAGGGGA
TCGCTGGAGCGAATTCGTTTTTACGTTGGAGCATCGTTATCAGAAATTCTTAGGCAAGAA
GAAGGATGCTCAGACAGAGACTTAGCACCAACAAACAACGGAGCTTCTAAATCTCGACAA
ACAAGTGAAGCACGTGCTCCTACCGTATCTTCCGCGTTCCCACCAAACAACGATAATATG
ATGTGCGGTATACCTTGCAGCATCTGGTCAGATTTCTTCCATCGACGCCGGGCAGAACCA
GCGATTGGTAAGCCCGCAACTTCAATCACATTCCCAGAAACAGAACCGAAATCACAATCT
TGCTGGGACCAATCTCATAGATACGAACACGGTGAACAATGGTCAAGGGACGAATGCCAA
TCGTGTAACTGCTCAAACGGAAGAGTAACTTGTATGGTTGCCGAATGTCCTCCCCTTCAT
TGCATTGATGTTATTAAGATGGAAGGAGAATGCTGCGCAGTATGTAGTGAAACGGCAGAT
CCCTACTCTGAATGGTCCGATTGGACACCATGCTCTGTAACGTGCGGACTAGGACAGGAG
CAAAGAGGGAGGGCGTGCGACGGAGTCCATTTTGAGTGCACTCTCACAACCAAGGAATCA
AAAACTTGTGTACGGACTCCATGTGACGTTAAAGTGAAAATGGATGGTAGATGGTCACCA
TGGGCCCCGTGGAACGGTTGTAGTGTGACTTGTGGCGAGGGACACAGCACCCGTGTTCGT
TTATGCAACGCTCCGTCTCCGCAACTCGGTGGAAAGGAGTGCGTTGGAGAATCACGCGAA
GTGACGACGTGTTATGAACCTCATTGTCCAATCGACGGAGAATGGGGACCCTATTCTGCA
TTTACTCCCTGTACCGCGTCTTGTGGTAACGGAACTAAAACTAGGAATCGCCAGTGCGAC
AATCCAGCGCCCAAGTATGGCGGAAACCCATGTGTAGGCGAGCCAAAAGAAACAACACAT
TGTTATGAAAGGCCATGCCCGATCGACGGTAGATGGTCATTATGGTCTAAATACGGACCC
TGCAGCGCAACATGTGGAACGGGGCAGAAGACCAGAAATCGAGAATGCAATAACCCCGAA
CCGAAATATGGCGGAAAGCAATGCGAAGGACAGAGAAGCGATGTCAAAGATTGTCGCGGA
ATAGAGTGCCCAATTGATGGCAAATGGGGACCATACACCCCATTCACTCGATGTAGCGCA
ACGTGTGGTCAAGGTTTCAGAAAGCGAGCTAGGGTATGTAACAATCCTGCCCCTCTGCAT
GGAGGCAAGCCGTGTGCCGGCGATTCAGGACAAATCGAAAGTTGCATCGAAAAGTCATGT
CCAATTAACACATGTCGAAAACATCCGTGTTATCGTGGAGTTACTTGTACACCTTTTGAC
GACGGAACTTTCGTATGCGGATCCTGTCCGGAAGGAATGCAGGGAAATGGAATCAAATGC
ATTGACATTGATGAGTGCTCATTGGTACCAGACGCGTGTTTCCACTACGAAGATAAACAC
AGATGCCAAAATCAGCACGGCGGTTATATTTGCTTGCCTTGCCCAGAAGGATACAAAGGA
ACAAGACCAAGCGGTGTTGGAGTGGAATATGCAACGGAACATAAGCAACAATGCAAGATA
TCCAACCCGTGCACAGACGGTTCAAACCCTTGTCCCGGAAATTCAGAATGCATTTACCTG
GATCCCACCATGTCGCCACCATTTATGTGCAAGTGTCACCCTGGATTCTCTGCCTGCCCC
TCTTGCAAAGGATTAGTTTGCTCCGAAGATAGTGATTTAGACGGATGGCCTGATCAAGAG
GCATCGTGTGAAAGGGAAAACGCAACCATAAAATGTCATATGGACAACTGTCCCACTCTG
CCTAACAGCGGCCAAGAAAACGCTGACAAGGATGACGAAGGAGACGCGTGCGATTTAGAC
GATGATGATGACGGAGTGCAAGACGCCAGAGACAACTGTCCCCTCAGTTTCAACCCAACT
CAATACGACAGTGATGACGACAGAGTGGGTGATGTCTGTGACAACTGCCCGTTTTTGCGT
AACCCAGGACAAATCGACACAGACGGTGACGGACTAGGCGACGATTGTGATCCAGATCTT
GATGGAGATGATATTCTTAATGGGGAGGATAACTGCAAATACGTCAGTAATAAGGAGCAG
AAGGATAGAGATTCGGACGGAGTCGGAGACGAGTGTGACAATTGCCCCAAGGTTGAAAAC
AGAGATCAAGGCGATATTGATGACGATTTAGTCGGAGATGCGTGCGATACTGACAGAGAC
AGAGATATGGATGGATGGCAAGACAACCGAGATAACTGCCCATTCATAGCGAACAGCGCA
CAAACAGACCATGACCAGGACGGCATAGGTGACAGTTGCGACCCTGATGATGATGACGAT
GGTATTTTGGACGAGGAGGACAATTGTAGACTCATCTTCAATCCAGATCAATTAGATACA
GACGGAAACGGACGAGGAGACGTTTGCGAACATGATTTCGATGGCGACGGTGTGCCAGAC
TTCGAGGATGCCTGTTACGCAAATGCAAAGATTCAAAAAACAGATTTTAGCGTGTTCGAC
CGAGTCAAATTGGACCCTAGCGGCACTGCACAAATCGATCCAAATTGGGTGATAAGACAC
AAAGGAAAAGAAATCATTCAGACAGTAAACTGCGATCCTGGTTTAGCTATTAGTCGAGAC
ACTTTCGAAGGCGTTGATTTTGACGGAACCTTTTTCGTCAATACTGGCAATGACGACGAT
TACGCCGGTTTCGTTTTCGGTTATCAATCGTCAAGCCGCTTTTACGTTCTCATGTGGAAG
CAAGTCTCACAGAGTTATTGGAAATCTTACCCAAGTCATGCTATGGGTATGGCTGGTCTG
CAACTAAAGGTTGTGGAATCAAAAACAGGACCGGGTGAAGAGCTCCGAAATGCGCTGTGG
CATACTGGCGATACAGCAGGCCAGGTGCGAACATTATGGCAAGATCCAACATCTCAAGGA
TGGAATAATCACAACGCGTACAGGTGGAGACTCAATCATAGACCGAGTACTGGTGAAATA
AGGGTTGTCATGCACAAGGGAAAAGATCTTTTAGTTGATTCGGGTCGCATCGTCGATAAA
ACATACGCCGGTGGACGCATGGGAATGTTCATCTTCTCCCAAGAAATGGTATTTTACTCC
GACATGGAATACAAATGCAATGATGCTCCAATTGAATACTAGTGACAATTGCTTGGGAAT
AGTACCCATTGTGTACGCGCGCCTACAAGATATAGCGCCTTAATTTTACTCCATAGCTCG
GACAGAAGCGCCCCATCAAGAACCATAGGCCGAATACTACGCGCTGGCAGGCTAGCTCAT
TTCTATTCCGGCATAGGATGTTGTGTTCTCATCACCCATCTATATTTGAAGAAATCTTTA
TCCGTGGTAGCTTTTTTTTGGAAAATCTCACACTGTACAAAGTACAGGACAATTATAATA
ACTATAATCGTTACTGATGAGTTGCCATGAAAAATATAGATTTATGAATCGCCGTAATGA
TAAAAATATTTCTAGTTTACTTCACTTTATTGTCGTCTTCATATTTATTCTTGATTCTAG
CTGCTTTTTGCCACCTTTCGCTTCCAGCTTTCATTTCATTTATGACCATTAG
| PANTHER |
Thrombospondin (IPR037349) - T[7-430] 0.0 - T[436-463] 0.0 - T[464-493] 0.0 - T[495-520] 0.0 - T[522-550] 0.0 - T[552-577] 0.0 - T[579-607] 0.0 - T[609-634] 0.0 - T[635-1287] 0.0 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[27-244] 1.5E-12 - T[1074-1288] 2.37E-96 |
| SMART |
Laminin_G (IPR001791) - T[31-231] 4.8E-4 |
| ProSiteProfiles |
VWF_dom (IPR001007) - T[319-376] 11.045 |
| SMART |
VWF_dom (IPR001007) - T[321-375] 9.2E-8 |
| Pfam |
VWF_dom (IPR001007) - T[321-375] 1.7E-8 |
| ProSitePatterns |
VWF_dom (IPR001007) - T[339-375] . |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[359-433] 4.0E-10 - T[434-489] 3.2E-18 - T[490-546] 3.6E-18 - T[547-603] 8.7E-17 - T[606-660] 1.4E-16 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[380-429] 11.11 - T[435-490] 13.49 - T[492-547] 13.702 - T[549-604] 13.175 - T[606-661] 12.619 |
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[381-423] 9.16E-8 - T[435-485] 1.2E-13 - T[489-546] 9.55E-14 - T[545-603] 8.11E-14 - T[605-656] 2.22E-13 |
| SMART |
TSP1_rpt (IPR000884) - T[382-429] 3.1E-9 - T[438-490] 1.0E-13 - T[495-547] 3.9E-14 - T[552-604] 5.5E-12 - T[609-661] 3.6E-13 |
| Pfam |
TSP1_rpt (IPR000884) - T[383-428] 5.4E-10 - T[439-489] 8.0E-12 - T[497-546] 2.9E-9 - T[553-603] 2.4E-10 - T[611-660] 3.1E-10 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[661-701] 6.894 - T[702-744] 7.63 - T[760-800] 9.578 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[661-701] 0.16 - T[702-759] 3.0E-4 |
| SMART |
EGF-like_dom (IPR000742) - T[664-701] 0.28 - T[705-759] 15.0 - T[763-803] 1.0 |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[702-741] 9.6E-8 |
| Gene3D |
TSP_type-3_rpt (IPR028974) - T[798-889] 5.1E-19 - T[890-952] 2.4E-20 - T[953-1074] 1.1E-41 |
| SUPERFAMILY |
TSP_type-3_rpt (IPR028974) - T[808-894] 5.49E-13 - T[883-953] 6.93E-14 - T[952-1070] 4.45E-32 |
| ProSiteProfiles |
Thrombospondin_3_rpt (IPR017897) - T[809-845] 13.393 - T[846-881] 15.868 - T[882-904] 11.222 - T[905-940] 15.09 - T[941-963] 11.776 - T[964-1001] 12.633 - T[1002-1037] 16.421 - T[1038-1073] 14.19 |
| Pfam |
Thrombospondin_3-like_rpt (IPR003367) - T[848-881] 1.9E-7 - T[906-940] 3.1E-6 - T[940-963] 0.0036 - T[965-1001] 3.5E-9 - T[1002-1037] 9.7E-7 - T[1039-1072] 3.5E-11 |
| ProSiteProfiles |
Thrombospondin_C (IPR008859) - T[1077-1291] 92.418 |
| Pfam |
Thrombospondin_C (IPR008859) - T[1091-1288] 2.5E-91 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSP1_HUMAN | 55.569 % | 891 | 0 |
| TSP2_HUMAN | 55.97 % | 865 | 0 |
| TSP3_HUMAN | 49.481 % | 563 | 0 |