- Transcript 'KH2012:KH.C13.16.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.C14.240.v2...' >
- Transcript 'KH2012:KH.C11.533.v1...' >
- Transcript 'Haaura.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S644.g06069.01.t
Possible name(s)
H2AFX; HIST1H2AA; HIST2H2AB
Gene model
Location
S644 [874 / 1,249]
Amino acid sequence
Length: 125
>Haaura.CG.MTP2014.S644.g06069.01.p
MSGRGKGGKAKAKAKSRSSRAGLQFPVGRIHRLLRKGNYAKRVGAGAPVYLAAVLEYLSA
EVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT
GKSS*
Nucleotide sequence
Length: 375
>Haaura.CG.MTP2014.S644.g06069.01.t
ATGTCTGGACGCGGTAAAGGAGGAAAGGCGAAGGCAAAGGCGAAATCTCGATCGTCCCGT
GCAGGACTTCAATTCCCAGTCGGTCGTATACACAGACTTCTGAGAAAGGGAAACTATGCT
AAACGTGTAGGTGCTGGAGCGCCAGTTTACCTGGCTGCAGTTCTCGAGTATCTGAGTGCC
GAAGTTTTGGAATTGGCTGGAAATGCTGCCCGTGATAATAAGAAGAGCAGAATCATTCCT
CGTCATCTCCAACTAGCAATCAGAAACGACGAAGAATTGAACAAACTTCTTGGAGGTGTC
ACAATTGCACAAGGAGGTGTATTGCCAAACATCCAAGCCGTTCTTTTGCCAAAGAAGACT
GGAAAGAGCTCGTAA
| Gene3D |
Histone-fold (IPR009072) - T[1-124] 1.3E-66 |
| SUPERFAMILY |
Histone-fold (IPR009072) - T[3-122] 3.74E-47 |
| SMART |
Histone_H2A (IPR002119) - T[3-122] 1.6E-81 |
| Pfam |
Histone_H2A/H2B/H3 (IPR007125) - T[8-88] 1.5E-16 |
| PRINTS |
Histone_H2A (IPR002119) - T[13-35] 1.8E-55 - T[42-57] 1.8E-55 - T[57-70] 1.8E-55 - T[71-85] 1.8E-55 - T[99-117] 1.8E-55 |
| ProSitePatterns |
Histone_H2A_CS (IPR032458) - T[21-27] . |
| CDD |
Histone_H2A (IPR002119) - T[22-119] 3.00133E-65 |
| Pfam |
Histone_H2A_C (IPR032454) - T[91-124] 2.4E-21 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| H2A1A_HUMAN | 92.562 % | 224 | 1.79E-77 |
| H2A2B_HUMAN | 93.388 % | 224 | 1.47E-77 |
| H2AX_HUMAN | 93.388 % | 224 | 2.11E-77 |