Aniseed - Transcript Card

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S6489.g11102.05.t

Possible name(s)

RDH12; RDH13

Gene model

Haaura.CG.MTP2014.S6489.g11102

Location

S6489 [1,181 / 2,003]

Sequences

Amino acid sequence

Length: 274

>Haaura.CG.MTP2014.S6489.g11102.05.p
DLAKREARVIIACRNMEKGEEAKKKIVEESKSENVVLKKLDLSSFESVREFAADINDTES
RLDVLINNAGVMMCPQSETKDGFETQFGTNHLGHFLLTNLLLDSLKKSAPSRIVTVSSLV
HYRWALTSMQWDDLNLRKNYDSILAYGQSKLCNVLFSRELSKKLQGTGVTSNSLEPGVVE
TDLRRHVGTHEKPSFKDRLMSLYTYFTGWALSTQEKGAQTSIYLAVAPELADVSGKYYSN
CKQRGESYDAMNDEFAERLWKISEEFTGLNPKSE

Nucleotide sequence

Length: 822

>Haaura.CG.MTP2014.S6489.g11102.05.t
GATTTGGCCAAGAGAGAAGCAAGAGTTATTATCGCTTGCAGGAATATGGAAAAGGGAGAA
GAAGCAAAAAAGAAGATTGTTGAAGAATCAAAATCAGAGAATGTTGTTTTGAAGAAACTT
GATCTCTCGTCGTTTGAATCTGTTCGAGAATTCGCCGCTGACATCAATGATACCGAATCT
CGACTTGATGTTCTTATTAATAACGCAGGGGTGATGATGTGCCCCCAATCCGAGACCAAA
GATGGGTTCGAGACGCAGTTCGGTACGAATCATCTGGGGCATTTTCTCTTAACGAATTTG
TTGTTGGATTCATTGAAGAAAAGTGCACCAAGCAGGATTGTGACTGTGTCTTCTCTTGTT
CACTATAGATGGGCCTTAACATCAATGCAATGGGACGATTTGAATTTGAGAAAGAACTAT
GATTCAATCCTAGCTTATGGCCAAAGCAAGCTATGCAATGTGCTTTTCTCTAGAGAGCTA
AGCAAGAAACTGCAAGGCACTGGTGTTACATCAAATAGTTTGGAACCTGGCGTGGTTGAG
ACAGATTTACGGAGACACGTTGGAACACATGAGAAGCCTTCGTTCAAGGACCGGTTGATG
TCGTTATACACTTATTTTACAGGATGGGCGCTTAGCACCCAAGAAAAGGGGGCTCAAACC
TCTATTTACTTGGCAGTTGCCCCAGAGCTTGCAGATGTCAGCGGAAAGTATTACTCCAAC
TGCAAACAGAGGGGAGAGTCGTACGATGCGATGAATGATGAGTTTGCAGAGAGATTGTGG
AAAATCAGTGAAGAATTTACTGGTCTTAACCCGAAAAGTGAG

InterProScan

SUPERFAMILY	NAD(P)-bd_dom_sf (IPR036291) - T[2-243] 1.89E-45
Pfam	SDR_fam (IPR002347) - T[2-120] 1.6E-18
PRINTS	SDR_fam (IPR002347) - T[60-71] 3.5E-11 - T[60-71] 7.0E-6 - T[105-121] 3.5E-11 - T[111-119] 7.0E-6 - T[146-165] 3.5E-11 - T[146-165] 7.0E-6 - T[167-184] 3.5E-11

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RDH11_HUMAN	46.468 %	223	4.84E-72
RDH13_HUMAN	51.273 %	244	3.97E-80
RDH12_HUMAN	49.071 %	231	4.01E-75